Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YOV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 7.159 1.132 -0.848
2 C03 C C2 N N N 0 6.418 1.217 1.456
3 C04 C C3 N N N 0 4.952 0.331 -0.255
4 C05 C C4 N N N 0 4.198 -0.564 0.729
5 C06 C C5 N Y N 0 2.769 -0.717 0.276
6 C07 C C6 N Y N 0 1.809 0.181 0.705
7 C08 C C7 N Y N 0 0.498 0.043 0.292
8 C09 C C8 N Y N 0 0.145 -0.998 -0.557
9 C11 C C9 N N N 0 -2.111 -0.158 -0.68
10 C12 C C10 N N N 0 -1.911 1.168 -1.118
11 C15 C C11 N N N 0 -4.909 2.86 0.18
12 C16 C C12 N N N 0 -4.174 0.545 0.327
13 C18 C C13 N N N 0 -3.247 -0.47 0.045
14 C20 C C14 N Y N 0 1.112 -1.898 -0.987
15 C21 C C15 N Y N 0 2.421 -1.752 -0.574
16 N02 N N1 N N N 0 6.345 0.481 0.187
17 N10 N N2 N N N 0 -1.18 -1.14 -0.978
18 N13 N N3 N N N 0 -2.787 2.093 -0.844
19 N14 N N4 N N N 0 -3.942 1.798 -0.112
20 O17 O O1 N N N 0 -5.185 0.294 0.965
21 CL19 CL CL1 N N N 0 -3.521 -2.092 0.599
22 H1 H H1 N N N 0 8.185 1.23 -0.495
23 H2 H H2 N N N 0 7.143 0.529 -1.756
24 H3 H H3 N N N 0 6.752 2.121 -1.061
25 H4 H H4 N N N 0 6.049 2.232 1.308
26 H5 H H5 N N N 0 5.807 0.713 2.204
27 H6 H H6 N N N 0 7.453 1.252 1.796
28 H7 H H7 N N N 0 4.932 -0.122 -1.247
29 H8 H H8 N N N 0 4.476 1.311 -0.294
30 H9 H H9 N N N 0 4.674 -1.544 0.768
31 H10 H H10 N N N 0 4.218 -0.112 1.721
32 H11 H H11 N N N 0 2.084 0.99 1.365
33 H12 H H12 N N N 0 -0.251 0.744 0.628
34 H13 H H13 N N N 0 -1.026 1.419 -1.685
35 H14 H H14 N N N 0 -4.558 3.798 -0.25
36 H15 H H15 N N N 0 -5.875 2.601 -0.253
37 H16 H H16 N N N 0 -5.011 2.97 1.259
38 H17 H H17 N N N 0 0.841 -2.709 -1.647
39 H18 H H18 N N N 0 3.175 -2.449 -0.91
40 H20 H H20 N N N 0 -1.449 -1.927 -1.478