Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y6H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 64


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 4.159 1.465 0.001
2 C11 C C2 N Y N 0 3.623 0.182 0.0
3 C13 C C3 N N N 0 1.354 1.172 0.0
4 C14 C C4 N Y N 0 -0.08 0.711 0.0
5 C15 C C5 N Y N 0 -0.738 0.499 1.197
6 C16 C C6 N Y N 0 -2.054 0.076 1.197
7 C17 C C7 N Y N 0 -2.712 -0.136 0.0
8 C18 C C8 N N N 0 -4.147 -0.598 0.0
9 C21 C C9 N N N 0 -3.484 -2.657 -1.25
10 C22 C C10 N N N 0 -3.484 -2.658 1.248
11 C24 C C11 N N N 0 -4.844 1.327 -1.246
12 C25 C C12 N N N 0 -5.547 1.875 0.001
13 C26 C C13 N N N 0 -7.012 1.436 -0.001
14 O29 O O1 N N N 0 -4.807 -0.102 1.167
15 C01 C C14 N N N 0 4.864 -3.275 0.0
16 C03 C C15 N Y N 0 4.468 -0.93 0.0
17 C04 C C16 N Y N 0 5.837 -0.756 0.0
18 C05 C C17 N Y N 0 6.375 0.535 0.0
19 C06 C C18 N N N 0 7.836 0.726 0.0
20 C09 C C19 N Y N 0 5.524 1.644 0.001
21 C19 C C20 N N N 0 -4.19 -2.127 -0.001
22 C20 C C21 N N N 0 -5.647 -2.596 -0.001
23 C27 C C22 N N N 0 -5.47 3.404 0.001
24 C28 C C23 N N N 0 -4.844 1.326 1.247
25 C30 C C24 N Y N 0 -2.055 0.077 -1.197
26 C31 C C25 N Y N 0 -0.74 0.505 -1.197
27 N12 N N1 N N N 0 2.242 0.006 0.0
28 O02 O O2 N N N 0 3.941 -2.184 0.0
29 O07 O O3 N N N 0 8.575 -0.239 -0.001
30 O08 O O4 N N N 0 8.354 1.97 0.0
31 O23 O O5 N N N 0 -4.807 -0.102 -1.167
32 H101 H H1 N N N 0 3.503 2.323 -0.004
33 H132 H H2 N N N 0 1.543 1.772 -0.889
34 H131 H H3 N N N 0 1.543 1.772 0.891
35 H151 H H4 N N N 0 -0.224 0.664 2.133
36 H161 H H5 N N N 0 -2.568 -0.09 2.132
37 H211 H H6 N N N 0 -2.446 -2.323 -1.25
38 H213 H H7 N N N 0 -3.515 -3.746 -1.25
39 H212 H H8 N N N 0 -3.987 -2.279 -2.14
40 H222 H H9 N N N 0 -2.446 -2.324 1.248
41 H221 H H10 N N N 0 -3.987 -2.28 2.138
42 H223 H H11 N N N 0 -3.514 -3.747 1.248
43 H241 H H12 N N N 0 -5.394 1.629 -2.137
44 H242 H H13 N N N 0 -3.827 1.716 -1.295
45 H263 H H14 N N N 0 -7.064 0.347 0.003
46 H261 H H15 N N N 0 -7.51 1.827 0.886
47 H262 H H16 N N N 0 -7.505 1.82 -0.894
48 H012 H H17 N N N 0 5.491 -3.221 -0.89
49 H013 H H18 N N N 0 5.491 -3.22 0.89
50 H011 H H19 N N N 0 4.314 -4.216 0.001
51 H041 H H20 N N N 0 6.491 -1.615 0.0
52 H091 H H21 N N N 0 5.938 2.642 0.001
53 H203 H H22 N N N 0 -5.677 -3.685 -0.001
54 H202 H H23 N N N 0 -6.15 -2.218 0.889
55 H201 H H24 N N N 0 -6.15 -2.218 -0.891
56 H272 H H25 N N N 0 -5.96 3.792 -0.891
57 H271 H H26 N N N 0 -5.97 3.792 0.889
58 H273 H H27 N N N 0 -4.425 3.715 0.007
59 H282 H H28 N N N 0 -3.827 1.715 1.294
60 H281 H H29 N N N 0 -5.394 1.627 2.139
61 H301 H H30 N N N 0 -2.569 -0.088 -2.132
62 H311 H H31 N N N 0 -0.226 0.672 -2.132
63 H121 H H32 N N N 0 1.867 -0.889 0.0
64 H1 H H33 N N N 0 9.318 2.045 -0.001