Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y1E

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 5.544 -1.276 -1.952
2 C13 C C2 N Y N 0 6.314 -2.22 0.53
3 C17 C C3 N Y N 0 -0.036 -1.114 0.224
4 C20 C C4 N Y N 0 0.372 -2.314 2.63
5 C21 C C5 N Y N 0 0.751 -0.989 2.474
6 C22 C C6 N Y N 0 -1.44 1.168 0.324
7 C24 C C7 N Y N 0 -3.337 -0.091 1.079
8 C26 C C8 N Y N 0 -5.101 -0.827 -0.52
9 C28 C C9 N Y N 0 -6.779 -1.517 -2.093
10 O01 O O1 N N N 0 0.911 3.725 0.635
11 C02 C C10 N N N 0 -0.157 3.164 0.479
12 N03 N N1 N N N 0 -0.238 1.824 0.602
13 C04 C C11 S N N 0 0.935 1.055 1.026
14 C05 C C12 N N N 0 1.996 1.127 -0.042
15 N06 N N2 N N N 0 3.171 0.49 0.131
16 C07 C C13 S N N 0 4.202 0.56 -0.907
17 C08 C C14 N N N 0 5.031 1.832 -0.716
18 C09 C C15 N Y N 0 5.1 -0.646 -0.804
19 C11 C C16 N Y N 0 6.368 -2.382 -1.858
20 C12 C C17 N Y N 0 6.753 -2.854 -0.617
21 C14 C C18 N Y N 0 5.48 -1.122 0.437
22 O15 O O2 N N N 0 1.793 1.759 -1.057
23 C16 C C19 N Y N 0 0.54 -0.383 1.245
24 N18 N N3 N Y N 0 -0.384 -2.373 0.408
25 C19 C C20 N Y N 0 -0.199 -2.981 1.563
26 C23 C C21 N Y N 0 -2.15 0.557 1.351
27 C25 C C22 N Y N 0 -3.825 -0.131 -0.226
28 C27 C C23 N Y N 0 -5.59 -0.869 -1.825
29 C29 C C24 N Y N 0 -7.484 -2.126 -1.07
30 C30 C C25 N Y N 0 -7.0 -2.092 0.225
31 C31 C C26 N Y N 0 -5.813 -1.447 0.505
32 C32 C C27 N Y N 0 -3.114 0.488 -1.253
33 C33 C C28 N Y N 0 -1.928 1.134 -0.977
34 C34 C C29 N N N 0 -1.36 3.947 0.158
35 C35 C C30 N N N 0 -1.261 5.254 -0.068
36 H1 H H1 N N N 0 5.243 -0.907 -2.921
37 H2 H H2 N N N 0 6.615 -2.589 1.499
38 H3 H H3 N N N 0 -0.208 -0.648 -0.735
39 H4 H H4 N N N 0 0.522 -2.818 3.574
40 H5 H H5 N N N 0 1.199 -0.442 3.291
41 H6 H H6 N N N 0 -3.888 -0.566 1.877
42 H7 H H7 N N N 0 -7.159 -1.55 -3.103
43 H8 H H8 N N N 0 1.325 1.47 1.955
44 H9 H H9 N N N 0 3.333 -0.016 0.943
45 H10 H H10 N N N 0 3.729 0.578 -1.888
46 H11 H H11 N N N 0 5.799 1.884 -1.488
47 H12 H H12 N N N 0 4.382 2.704 -0.79
48 H13 H H13 N N N 0 5.504 1.813 0.266
49 H14 H H14 N N N 0 6.711 -2.878 -2.755
50 H15 H H15 N N N 0 7.405 -3.712 -0.544
51 H16 H H16 N N N 0 5.133 -0.629 1.333
52 H17 H H17 N N N 0 -0.496 -4.014 1.676
53 H18 H H18 N N N 0 -1.772 0.588 2.362
54 H19 H H19 N N N 0 -5.041 -0.394 -2.624
55 H20 H H20 N N N 0 -8.413 -2.632 -1.285
56 H21 H H21 N N N 0 -7.555 -2.569 1.02
57 H22 H H22 N N N 0 -5.436 -1.422 1.517
58 H23 H H23 N N N 0 -3.492 0.461 -2.264
59 H24 H H24 N N N 0 -1.377 1.614 -1.772
60 H25 H H25 N N N 0 -2.322 3.46 0.105
61 H26 H H26 N N N 0 -2.144 5.829 -0.305
62 H27 H H27 N N N 0 -0.298 5.74 -0.016