data_Y1E
#
_chem_comp.id Y1E
_chem_comp.name
"N-([1,1'-biphenyl]-4-yl)-N-[(1S)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C30 H27 N3 O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-21
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 461.554
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y1E
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FIW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y1E C10 C1 C 0 1 Y N N N N N -24.994 -4.898 19.092 5.544 -1.276 -1.952 C10 Y1E 1
Y1E C13 C2 C 0 1 Y N N N N N -26.772 -3.749 20.868 6.314 -2.220 0.530 C13 Y1E 2
Y1E C17 C3 C 0 1 Y N N N N N -21.405 -0.152 17.624 -0.036 -1.114 0.224 C17 Y1E 3
Y1E C20 C4 C 0 1 Y N N N N N -22.212 -1.212 19.996 0.372 -2.314 2.630 C20 Y1E 4
Y1E C21 C5 C 0 1 Y N N N N N -23.178 -0.929 19.046 0.751 -0.989 2.474 C21 Y1E 5
Y1E C22 C6 C 0 1 Y N N N N N -24.595 1.697 15.296 -1.440 1.168 0.324 C22 Y1E 6
Y1E C24 C7 C 0 1 Y N N N N N -24.556 1.515 12.921 -3.337 -0.091 1.079 C24 Y1E 7
Y1E C26 C8 C 0 1 Y N N N N N -26.314 2.564 11.492 -5.101 -0.827 -0.520 C26 Y1E 8
Y1E C28 C9 C 0 1 Y N N N N N -26.126 2.510 9.107 -6.779 -1.517 -2.093 C28 Y1E 9
Y1E O01 O1 O 0 1 N N N N N N -23.097 1.931 18.562 0.911 3.725 0.635 O01 Y1E 10
Y1E C02 C10 C 0 1 N N N N N N -23.604 2.303 17.559 -0.157 3.164 0.479 C02 Y1E 11
Y1E N03 N1 N 0 1 N N N N N N -23.986 1.339 16.552 -0.238 1.824 0.602 N03 Y1E 12
Y1E C04 C11 C 0 1 N N S N N N -23.758 -0.066 16.748 0.935 1.055 1.026 C04 Y1E 13
Y1E C05 C12 C 0 1 N N N N N N -24.988 -0.972 16.764 1.996 1.127 -0.042 C05 Y1E 14
Y1E N06 N2 N 0 1 N N N N N N -24.736 -2.350 17.154 3.171 0.490 0.131 N06 Y1E 15
Y1E C07 C13 C 0 1 N N S N N N -25.746 -3.376 17.218 4.202 0.560 -0.907 C07 Y1E 16
Y1E C08 C14 C 0 1 N N N N N N -25.299 -4.490 16.269 5.031 1.832 -0.716 C08 Y1E 17
Y1E C09 C15 C 0 1 Y N N N N N -25.822 -3.876 18.664 5.100 -0.646 -0.804 C09 Y1E 18
Y1E C11 C16 C 0 1 Y N N N N N -25.055 -5.348 20.406 6.368 -2.382 -1.858 C11 Y1E 19
Y1E C12 C17 C 0 1 Y N N N N N -25.941 -4.774 21.295 6.753 -2.854 -0.617 C12 Y1E 20
Y1E C14 C18 C 0 1 Y N N N N N -26.714 -3.298 19.556 5.480 -1.122 0.437 C14 Y1E 21
Y1E O15 O2 O 0 1 N N N N N N -26.072 -0.583 16.460 1.793 1.759 -1.057 O15 Y1E 22
Y1E C16 C19 C 0 1 Y N N N N N -22.753 -0.389 17.844 0.540 -0.383 1.245 C16 Y1E 23
Y1E N18 N3 N 0 1 Y N N N N N -20.517 -0.432 18.548 -0.384 -2.373 0.408 N18 Y1E 24
Y1E C19 C20 C 0 1 Y N N N N N -20.886 -0.945 19.698 -0.199 -2.981 1.563 C19 Y1E 25
Y1E C23 C21 C 0 1 Y N N N N N -23.997 1.229 14.142 -2.150 0.557 1.351 C23 Y1E 26
Y1E C25 C22 C 0 1 Y N N N N N -25.713 2.266 12.861 -3.825 -0.131 -0.226 C25 Y1E 27
Y1E C27 C23 C 0 1 Y N N N N N -25.590 2.253 10.353 -5.590 -0.869 -1.825 C27 Y1E 28
Y1E C29 C24 C 0 1 Y N N N N N -27.391 3.069 8.998 -7.484 -2.126 -1.070 C29 Y1E 29
Y1E C30 C25 C 0 1 Y N N N N N -28.117 3.370 10.136 -7.000 -2.092 0.225 C30 Y1E 30
Y1E C31 C26 C 0 1 Y N N N N N -27.581 3.115 11.387 -5.813 -1.447 0.505 C31 Y1E 31
Y1E C32 C27 C 0 1 Y N N N N N -26.320 2.725 14.021 -3.114 0.488 -1.253 C32 Y1E 32
Y1E C33 C28 C 0 1 Y N N N N N -25.763 2.436 15.253 -1.928 1.134 -0.977 C33 Y1E 33
Y1E C34 C29 C 0 1 N N N N N N -23.823 3.791 17.321 -1.360 3.947 0.158 C34 Y1E 34
Y1E C35 C30 C 0 1 N N N N N N -22.875 4.477 16.708 -1.261 5.254 -0.068 C35 Y1E 35
Y1E H1 H1 H 0 1 N N N N N N -24.296 -5.349 18.402 5.243 -0.907 -2.921 H1 Y1E 36
Y1E H2 H2 H 0 1 N N N N N N -27.468 -3.299 21.560 6.615 -2.589 1.499 H2 Y1E 37
Y1E H3 H3 H 0 1 N N N N N N -21.083 0.267 16.682 -0.208 -0.648 -0.735 H3 Y1E 38
Y1E H4 H4 H 0 1 N N N N N N -22.487 -1.633 20.952 0.522 -2.818 3.574 H4 Y1E 39
Y1E H5 H5 H 0 1 N N N N N N -24.224 -1.122 19.235 1.199 -0.442 3.291 H5 Y1E 40
Y1E H6 H6 H 0 1 N N N N N N -24.094 1.155 12.014 -3.888 -0.566 1.877 H6 Y1E 41
Y1E H7 H7 H 0 1 N N N N N N -25.561 2.276 8.217 -7.159 -1.550 -3.103 H7 Y1E 42
Y1E H8 H8 H 0 1 N N N N N N -23.234 -0.377 15.832 1.325 1.470 1.955 H8 Y1E 43
Y1E H9 H9 H 0 1 N N N N N N -23.799 -2.603 17.394 3.333 -0.016 0.943 H9 Y1E 44
Y1E H10 H10 H 0 1 N N N N N N -26.727 -2.988 16.905 3.729 0.578 -1.888 H10 Y1E 45
Y1E H11 H11 H 0 1 N N N N N N -26.041 -5.302 16.281 5.799 1.884 -1.488 H11 Y1E 46
Y1E H12 H12 H 0 1 N N N N N N -25.212 -4.089 15.248 4.382 2.704 -0.790 H12 Y1E 47
Y1E H13 H13 H 0 1 N N N N N N -24.323 -4.879 16.595 5.504 1.813 0.266 H13 Y1E 48
Y1E H14 H14 H 0 1 N N N N N N -24.408 -6.149 20.732 6.711 -2.878 -2.755 H14 Y1E 49
Y1E H15 H15 H 0 1 N N N N N N -25.987 -5.121 22.317 7.405 -3.712 -0.544 H15 Y1E 50
Y1E H16 H16 H 0 1 N N N N N N -27.362 -2.498 19.230 5.133 -0.629 1.333 H16 Y1E 51
Y1E H17 H17 H 0 1 N N N N N N -20.130 -1.167 20.437 -0.496 -4.014 1.676 H17 Y1E 52
Y1E H18 H18 H 0 1 N N N N N N -23.093 0.640 14.200 -1.772 0.588 2.362 H18 Y1E 53
Y1E H19 H19 H 0 1 N N N N N N -24.609 1.811 10.439 -5.041 -0.394 -2.624 H19 Y1E 54
Y1E H20 H20 H 0 1 N N N N N N -27.810 3.269 8.023 -8.413 -2.632 -1.285 H20 Y1E 55
Y1E H21 H21 H 0 1 N N N N N N -29.102 3.804 10.049 -7.555 -2.569 1.020 H21 Y1E 56
Y1E H22 H22 H 0 1 N N N N N N -28.148 3.345 12.277 -5.436 -1.422 1.517 H22 Y1E 57
Y1E H23 H23 H 0 1 N N N N N N -27.227 3.308 13.962 -3.492 0.461 -2.264 H23 Y1E 58
Y1E H24 H24 H 0 1 N N N N N N -26.231 2.780 16.163 -1.377 1.614 -1.772 H24 Y1E 59
Y1E H25 H25 H 0 1 N N N N N N -24.732 4.274 17.646 -2.322 3.460 0.105 H25 Y1E 60
Y1E H26 H26 H 0 1 N N N N N N -23.005 5.534 16.527 -2.144 5.829 -0.305 H26 Y1E 61
Y1E H27 H27 H 0 1 N N N N N N -21.970 3.981 16.388 -0.298 5.740 -0.016 H27 Y1E 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y1E C29 C28 DOUB Y N 1
Y1E C29 C30 SING Y N 2
Y1E C28 C27 SING Y N 3
Y1E C30 C31 DOUB Y N 4
Y1E C27 C26 DOUB Y N 5
Y1E C31 C26 SING Y N 6
Y1E C26 C25 SING N N 7
Y1E C25 C24 DOUB Y N 8
Y1E C25 C32 SING Y N 9
Y1E C24 C23 SING Y N 10
Y1E C32 C33 DOUB Y N 11
Y1E C23 C22 DOUB Y N 12
Y1E C33 C22 SING Y N 13
Y1E C22 N03 SING N N 14
Y1E C08 C07 SING N N 15
Y1E O15 C05 DOUB N N 16
Y1E N03 C04 SING N N 17
Y1E N03 C02 SING N N 18
Y1E C35 C34 DOUB N N 19
Y1E C04 C05 SING N N 20
Y1E C04 C16 SING N N 21
Y1E C05 N06 SING N N 22
Y1E N06 C07 SING N N 23
Y1E C07 C09 SING N N 24
Y1E C34 C02 SING N N 25
Y1E C02 O01 DOUB N N 26
Y1E C17 C16 DOUB Y N 27
Y1E C17 N18 SING Y N 28
Y1E C16 C21 SING Y N 29
Y1E N18 C19 DOUB Y N 30
Y1E C09 C10 DOUB Y N 31
Y1E C09 C14 SING Y N 32
Y1E C21 C20 DOUB Y N 33
Y1E C10 C11 SING Y N 34
Y1E C14 C13 DOUB Y N 35
Y1E C19 C20 SING Y N 36
Y1E C11 C12 DOUB Y N 37
Y1E C13 C12 SING Y N 38
Y1E C10 H1 SING N N 39
Y1E C13 H2 SING N N 40
Y1E C17 H3 SING N N 41
Y1E C20 H4 SING N N 42
Y1E C21 H5 SING N N 43
Y1E C24 H6 SING N N 44
Y1E C28 H7 SING N N 45
Y1E C04 H8 SING N N 46
Y1E N06 H9 SING N N 47
Y1E C07 H10 SING N N 48
Y1E C08 H11 SING N N 49
Y1E C08 H12 SING N N 50
Y1E C08 H13 SING N N 51
Y1E C11 H14 SING N N 52
Y1E C12 H15 SING N N 53
Y1E C14 H16 SING N N 54
Y1E C19 H17 SING N N 55
Y1E C23 H18 SING N N 56
Y1E C27 H19 SING N N 57
Y1E C29 H20 SING N N 58
Y1E C30 H21 SING N N 59
Y1E C31 H22 SING N N 60
Y1E C32 H23 SING N N 61
Y1E C33 H24 SING N N 62
Y1E C34 H25 SING N N 63
Y1E C35 H26 SING N N 64
Y1E C35 H27 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y1E SMILES ACDLabs 12.01 'CC(NC(=O)C(N(C(=O)C=C)c1ccc(cc1)c1ccccc1)c1cccnc1)c1ccccc1'
Y1E InChI InChI 1.06 'InChI=1S/C30H27N3O2/c1-3-28(34)33(27-18-16-25(17-19-27)24-13-8-5-9-14-24)29(26-15-10-20-31-21-26)30(35)32-22(2)23-11-6-4-7-12-23/h3-22,29H,1H2,2H3,(H,32,35)/t22-,29-/m0/s1'
Y1E InChIKey InChI 1.06 HCNIOVAEECJZKZ-ZTOMLWHTSA-N
Y1E SMILES_CANONICAL CACTVS 3.385 'C[C@H](NC(=O)[C@@H](N(C(=O)C=C)c1ccc(cc1)c2ccccc2)c3cccnc3)c4ccccc4'
Y1E SMILES CACTVS 3.385 'C[CH](NC(=O)[CH](N(C(=O)C=C)c1ccc(cc1)c2ccccc2)c3cccnc3)c4ccccc4'
Y1E SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'C[C@@H](c1ccccc1)NC(=O)[C@H](c2cccnc2)N(c3ccc(cc3)c4ccccc4)C(=O)C=C'
Y1E SMILES 'OpenEye OEToolkits' 2.0.7 'CC(c1ccccc1)NC(=O)C(c2cccnc2)N(c3ccc(cc3)c4ccccc4)C(=O)C=C'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y1E 'SYSTEMATIC NAME' ACDLabs 12.01 "N-([1,1'-biphenyl]-4-yl)-N-[(1S)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide"
Y1E 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '~{N}-[(1~{S})-2-oxidanylidene-2-[[(1~{S})-1-phenylethyl]amino]-1-pyridin-3-yl-ethyl]-~{N}-(4-phenylphenyl)prop-2-enamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y1E 'Create component' 2022-12-21 RCSB
Y1E 'Initial release' 2023-08-09 RCSB
Y1E 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id Y1E
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C35
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y1E C10 C 14.691 1.875 1
Y1E C13 C 14.691 4.875 2
Y1E C17 C 9.495 4.875 3
Y1E C20 C 6.897 6.375 4
Y1E C21 C 6.897 4.875 5
Y1E C22 C 6.897 0.375 6
Y1E C24 C 8.196 -1.875 7
Y1E C26 C 6.897 -4.125 8
Y1E C28 C 8.196 -6.375 9
Y1E O01 O 5.598 4.125 10
Y1E C02 C 5.598 2.625 11
Y1E N03 N 6.897 1.875 12
Y1E C04 C 8.196 2.625 13
Y1E C05 C 9.495 1.875 14
Y1E N06 N 10.794 2.625 15
Y1E C07 C 12.093 1.875 16
Y1E C08 C 12.093 0.375 17
Y1E C09 C 13.392 2.625 18
Y1E C11 C 15.990 2.625 19
Y1E C12 C 15.990 4.125 20
Y1E C14 C 13.392 4.125 21
Y1E O15 O 9.495 0.375 22
Y1E C16 C 8.196 4.125 23
Y1E N18 N 9.495 6.375 24
Y1E C19 C 8.196 7.125 25
Y1E C23 C 8.196 -0.375 26
Y1E C25 C 6.897 -2.625 27
Y1E C27 C 8.196 -4.875 28
Y1E C29 C 6.897 -7.125 29
Y1E C30 C 5.598 -6.375 30
Y1E C31 C 5.598 -4.875 31
Y1E C32 C 5.598 -1.875 32
Y1E C33 C 5.598 -0.375 33
Y1E C34 C 4.299 1.875 34
Y1E C35 C 3.000 2.625 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y1E C29 C28 DOUBLE NONE 1
Y1E C29 C30 SINGLE NONE 2
Y1E C28 C27 SINGLE NONE 3
Y1E C30 C31 DOUBLE NONE 4
Y1E C27 C26 DOUBLE NONE 5
Y1E C31 C26 SINGLE NONE 6
Y1E C26 C25 SINGLE NONE 7
Y1E C25 C24 DOUBLE NONE 8
Y1E C25 C32 SINGLE NONE 9
Y1E C24 C23 SINGLE NONE 10
Y1E C32 C33 DOUBLE NONE 11
Y1E C23 C22 DOUBLE NONE 12
Y1E C33 C22 SINGLE NONE 13
Y1E C22 N03 SINGLE NONE 14
Y1E C07 C08 SINGLE BEGINDASH 15
Y1E O15 C05 DOUBLE NONE 16
Y1E C04 N03 SINGLE BEGINWEDGE 17
Y1E N03 C02 SINGLE NONE 18
Y1E C35 C34 DOUBLE NONE 19
Y1E C04 C05 SINGLE NONE 20
Y1E C04 C16 SINGLE NONE 21
Y1E C05 N06 SINGLE NONE 22
Y1E N06 C07 SINGLE NONE 23
Y1E C07 C09 SINGLE NONE 24
Y1E C34 C02 SINGLE NONE 25
Y1E C02 O01 DOUBLE NONE 26
Y1E C17 C16 DOUBLE NONE 27
Y1E C17 N18 SINGLE NONE 28
Y1E C16 C21 SINGLE NONE 29
Y1E N18 C19 DOUBLE NONE 30
Y1E C09 C10 DOUBLE NONE 31
Y1E C09 C14 SINGLE NONE 32
Y1E C21 C20 DOUBLE NONE 33
Y1E C10 C11 SINGLE NONE 34
Y1E C14 C13 DOUBLE NONE 35
Y1E C19 C20 SINGLE NONE 36
Y1E C11 C12 DOUBLE NONE 37
Y1E C13 C12 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y1E MurckoScaffold S1 scaffold 'O=C(NCc1ccccc1)[C@@H](Nc1ccc(-c2ccccc2)cc1)c1cccnc1' InChI=1S/C26H23N3O/c30-26(28-18-20-8-3-1-4-9-20)25(23-12-7-17-27-19-23)29-24-15-13-22(14-16-24)21-10-5-2-6-11-21/h1-17,19,25,29H,18H2,(H,28,30)/t25-/m0/s1 VSAAMHDNLYGIBA-VWLOTQADSA-N
Y1E amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y1E peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
Y1E phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Y1E pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
Y1E Z270834632 F5 fragment CN(C)C(CN)c1cccnc1 InChI=1S/C9H15N3/c1-12(2)9(6-10)8-4-3-5-11-7-8/h3-5,7,9H,6,10H2,1-2H3 PEQPPVGTDBKQPE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y1E C10 S1 1
Y1E C13 S1 1
Y1E C17 S1 1
Y1E C20 S1 1
Y1E C21 S1 1
Y1E C22 S1 1
Y1E C24 S1 1
Y1E C26 S1 1
Y1E C28 S1 1
Y1E N03 S1 1
Y1E C04 S1 1
Y1E C05 S1 1
Y1E N06 S1 1
Y1E C07 S1 1
Y1E C09 S1 1
Y1E C11 S1 1
Y1E C12 S1 1
Y1E C14 S1 1
Y1E O15 S1 1
Y1E C16 S1 1
Y1E N18 S1 1
Y1E C19 S1 1
Y1E C23 S1 1
Y1E C25 S1 1
Y1E C27 S1 1
Y1E C29 S1 1
Y1E C30 S1 1
Y1E C31 S1 1
Y1E C32 S1 1
Y1E C33 S1 1
Y1E N03 F1 1
Y1E C02 F1 1
Y1E O01 F1 1
Y1E C34 F1 1
Y1E N06 F1 2
Y1E C05 F1 2
Y1E O15 F1 2
Y1E C04 F1 2
Y1E O15 F2 1
Y1E C05 F2 1
Y1E C04 F2 1
Y1E N03 F2 1
Y1E C10 F3 1
Y1E C09 F3 1
Y1E C14 F3 1
Y1E C13 F3 1
Y1E C12 F3 1
Y1E C11 F3 1
Y1E C22 F3 2
Y1E C23 F3 2
Y1E C24 F3 2
Y1E C25 F3 2
Y1E C32 F3 2
Y1E C33 F3 2
Y1E C26 F3 3
Y1E C27 F3 3
Y1E C28 F3 3
Y1E C29 F3 3
Y1E C30 F3 3
Y1E C31 F3 3
Y1E C17 F4 1
Y1E C16 F4 1
Y1E C21 F4 1
Y1E C20 F4 1
Y1E C19 F4 1
Y1E N18 F4 1
Y1E C22 F5 1
Y1E N03 F5 1
Y1E C02 F5 1
Y1E C04 F5 1
Y1E C05 F5 1
Y1E N06 F5 1
Y1E C16 F5 1
Y1E C21 F5 1
Y1E C20 F5 1
Y1E C19 F5 1
Y1E N18 F5 1
Y1E C17 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y1E
_pdbe_chem_comp_rdkit_properties.exactmw 461.210
_pdbe_chem_comp_rdkit_properties.amw 461.565
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 243.312
_pdbe_chem_comp_rdkit_properties.tpsa 62.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.016
_pdbe_chem_comp_rdkit_properties.CrippenMR 136.861
_pdbe_chem_comp_rdkit_properties.chi0v 17.158
_pdbe_chem_comp_rdkit_properties.chi1v 9.223
_pdbe_chem_comp_rdkit_properties.chi2v 3.976
_pdbe_chem_comp_rdkit_properties.chi3v 3.976
_pdbe_chem_comp_rdkit_properties.chi4v 2.524
_pdbe_chem_comp_rdkit_properties.chi0n 44.158
_pdbe_chem_comp_rdkit_properties.chi1n 22.671
_pdbe_chem_comp_rdkit_properties.chi2n 3.976
_pdbe_chem_comp_rdkit_properties.chi3n 3.976
_pdbe_chem_comp_rdkit_properties.chi4n 2.524
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.510
_pdbe_chem_comp_rdkit_properties.kappa1 7.247
_pdbe_chem_comp_rdkit_properties.kappa2 11.075
_pdbe_chem_comp_rdkit_properties.kappa3 5.529
_pdbe_chem_comp_rdkit_properties.Phi 2.293
#
_pdbe_chem_comp_external_mappings.comp_id Y1E
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168433872
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y1E C10 -2.429 3.520 -0.029 ETKDGv3 1
Y1E C13 -0.082 4.757 0.918 ETKDGv3 2
Y1E C17 -3.308 -1.260 -0.518 ETKDGv3 3
Y1E C20 -2.430 0.125 1.747 ETKDGv3 4
Y1E C21 -1.748 0.232 0.604 ETKDGv3 5
Y1E C22 0.527 -1.633 -0.860 ETKDGv3 6
Y1E C24 0.998 -2.595 1.342 ETKDGv3 7
Y1E C26 3.169 -2.350 2.491 ETKDGv3 8
Y1E C28 3.655 -2.507 4.892 ETKDGv3 9
Y1E O01 -0.038 -1.078 -4.292 ETKDGv3 10
Y1E C02 0.106 -1.836 -3.294 ETKDGv3 11
Y1E N03 -0.338 -1.397 -1.991 ETKDGv3 12
Y1E C04 -1.438 -0.407 -1.919 ETKDGv3 13
Y1E C05 -0.941 0.999 -2.156 ETKDGv3 14
Y1E N06 -1.875 2.030 -2.508 ETKDGv3 15
Y1E C07 -1.544 3.450 -2.359 ETKDGv3 16
Y1E C08 -2.593 4.326 -3.052 ETKDGv3 17
Y1E C09 -1.434 3.807 -0.892 ETKDGv3 18
Y1E C11 -2.289 3.843 1.406 ETKDGv3 19
Y1E C12 -1.174 4.428 1.856 ETKDGv3 20
Y1E C14 -0.204 4.466 -0.383 ETKDGv3 21
Y1E O15 0.275 1.285 -1.980 ETKDGv3 22
Y1E C16 -2.210 -0.487 -0.614 ETKDGv3 23
Y1E N18 -4.025 -1.356 0.725 ETKDGv3 24
Y1E C19 -3.637 -0.719 1.791 ETKDGv3 25
Y1E C23 0.105 -2.355 0.191 ETKDGv3 26
Y1E C25 2.256 -2.112 1.345 ETKDGv3 27
Y1E C27 2.727 -2.281 3.764 ETKDGv3 28
Y1E C29 4.943 -2.778 4.658 ETKDGv3 29
Y1E C30 5.440 -2.857 3.271 ETKDGv3 30
Y1E C31 4.604 -2.654 2.245 ETKDGv3 31
Y1E C32 2.732 -1.345 0.165 ETKDGv3 32
Y1E C33 1.919 -1.124 -0.874 ETKDGv3 33
Y1E C34 0.752 -3.146 -3.505 ETKDGv3 34
Y1E C35 0.516 -4.202 -2.730 ETKDGv3 35
Y1E H1 -3.334 3.032 -0.369 ETKDGv3 36
Y1E H2 0.817 5.233 1.286 ETKDGv3 37
Y1E H3 -3.664 -1.822 -1.373 ETKDGv3 38
Y1E H4 -2.098 0.648 2.635 ETKDGv3 39
Y1E H5 -0.852 0.840 0.578 ETKDGv3 40
Y1E H6 0.625 -3.185 2.170 ETKDGv3 41
Y1E H7 3.288 -2.447 5.909 ETKDGv3 42
Y1E H8 -2.152 -0.625 -2.746 ETKDGv3 43
Y1E H9 -2.854 1.753 -2.748 ETKDGv3 44
Y1E H10 -0.574 3.642 -2.869 ETKDGv3 45
Y1E H11 -2.635 4.078 -4.134 ETKDGv3 46
Y1E H12 -3.600 4.164 -2.612 ETKDGv3 47
Y1E H13 -2.323 5.399 -2.948 ETKDGv3 48
Y1E H14 -3.090 3.599 2.092 ETKDGv3 49
Y1E H15 -1.069 4.662 2.908 ETKDGv3 50
Y1E H16 0.604 4.710 -1.062 ETKDGv3 51
Y1E H17 -4.199 -0.813 2.710 ETKDGv3 52
Y1E H18 -0.891 -2.778 0.205 ETKDGv3 53
Y1E H19 1.695 -2.037 3.984 ETKDGv3 54
Y1E H20 5.623 -2.943 5.484 ETKDGv3 55
Y1E H21 6.482 -3.084 3.086 ETKDGv3 56
Y1E H22 4.981 -2.732 1.233 ETKDGv3 57
Y1E H23 3.738 -0.945 0.143 ETKDGv3 58
Y1E H24 2.281 -0.564 -1.727 ETKDGv3 59
Y1E H25 1.393 -3.272 -4.370 ETKDGv3 60
Y1E H26 -0.178 -4.155 -1.903 ETKDGv3 61
Y1E H27 0.997 -5.147 -2.947 ETKDGv3 62
#