Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VMQ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.896 3.017 -1.39
2 C10 C C2 N Y N 0 -1.657 -2.408 0.438
3 C11 C C3 N Y N 0 -0.836 -3.526 0.578
4 C13 C C4 N Y N 0 -2.648 -4.892 1.0
5 C14 C C5 N Y N 0 -3.537 -3.842 0.885
6 C15 C C6 N Y N 0 -3.05 -2.566 0.599
7 C16 C C7 N Y N 0 -3.968 -1.411 0.469
8 C17 C C8 N Y N 0 -3.999 -0.671 -0.713
9 C18 C C9 N Y N 0 -4.857 0.404 -0.829
10 C19 C C10 N Y N 0 -5.685 0.748 0.225
11 C20 C C11 N Y N 0 -5.659 0.018 1.4
12 C21 C C12 N Y N 0 -4.81 -1.062 1.525
13 C22 C C13 N N N 0 -6.619 1.923 0.092
14 C26 C C14 N Y N 0 2.277 0.343 -0.105
15 C27 C C15 N Y N 0 2.823 1.384 0.623
16 C28 C C16 N Y N 0 4.172 1.38 0.928
17 C29 C C17 N Y N 0 4.973 0.336 0.506
18 C3 C C18 N N N 0 0.344 2.229 -3.738
19 C30 C C19 N Y N 0 4.427 -0.704 -0.222
20 C31 C C20 N Y N 0 3.078 -0.704 -0.522
21 C32 C C21 N N N 0 5.301 -1.842 -0.683
22 C36 C C22 N N N 0 4.767 2.515 1.721
23 C4 C C23 N N N 0 0.625 0.65 -1.903
24 C6 C C24 S N N 0 0.807 0.347 -0.438
25 C8 C C25 N N N 0 -1.08 -1.084 0.135
26 F23 F F1 N N N 0 -7.844 1.489 -0.425
27 F24 F F2 N N N 0 -6.822 2.502 1.349
28 F25 F F3 N N N 0 -6.058 2.87 -0.772
29 F33 F F4 N N N 0 6.615 -1.622 -0.257
30 F34 F F5 N N N 0 4.829 -3.042 -0.14
31 F35 F F6 N N N 0 5.27 -1.918 -2.079
32 F37 F F7 N N N 0 6.105 2.691 1.351
33 F38 F F8 N N N 0 4.054 3.69 1.462
34 F39 F F9 N N N 0 4.697 2.218 3.086
35 N12 N N1 N Y N 0 -1.349 -4.708 0.848
36 N2 N N2 N N N 0 0.622 1.928 -2.331
37 N7 N N3 N N N 0 0.235 -0.967 -0.137
38 O5 O O1 N N N 0 0.482 -0.255 -2.697
39 O9 O O2 N N N 0 -1.791 -0.097 0.13
40 H1 H H1 N N N 0 0.843 3.972 -1.913
41 H2 H H2 N N N 0 0.156 3.0 -0.59
42 H3 H H3 N N N 0 1.892 2.889 -0.967
43 H4 H H4 N N N 0 0.233 -3.421 0.462
44 H5 H H5 N N N 0 -3.021 -5.881 1.221
45 H6 H H6 N N N 0 -4.597 -4.007 1.016
46 H7 H H7 N N N 0 -3.353 -0.938 -1.536
47 H8 H H8 N N N 0 -4.881 0.978 -1.743
48 H9 H H9 N N N 0 -6.307 0.292 2.219
49 H10 H H10 N N N 0 -4.79 -1.631 2.443
50 H11 H H11 N N N 0 2.197 2.199 0.952
51 H12 H H12 N N N 0 6.027 0.334 0.744
52 H13 H H13 N N N 0 -0.728 2.372 -3.874
53 H14 H H14 N N N 0 0.871 3.138 -4.026
54 H15 H H15 N N N 0 0.682 1.4 -4.36
55 H16 H H16 N N N 0 2.651 -1.517 -1.09
56 H17 H H17 N N N 0 0.302 1.108 0.156
57 H18 H H18 N N N 0 0.802 -1.754 -0.133