data_VMQ
#
_chem_comp.id VMQ
_chem_comp.name
N-[(1S)-1-[3,5-bis(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H18 F9 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-02
_chem_comp.pdbx_modified_date 2023-04-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 563.415
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VMQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8EA9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VMQ C1 C1 C 0 1 N N N N N N 5.409 -19.808 22.019 0.896 3.017 -1.390 C1 VMQ 1
VMQ C10 C2 C 0 1 Y N N N N N 12.126 -18.329 20.582 -1.657 -2.408 0.438 C10 VMQ 2
VMQ C11 C3 C 0 1 Y N N N N N 12.398 -19.585 21.103 -0.836 -3.526 0.578 C11 VMQ 3
VMQ C13 C4 C 0 1 Y N N N N N 14.406 -19.639 19.989 -2.648 -4.892 1.000 C13 VMQ 4
VMQ C14 C5 C 0 1 Y N N N N N 14.203 -18.383 19.430 -3.537 -3.842 0.885 C14 VMQ 5
VMQ C15 C6 C 0 1 Y N N N N N 13.022 -17.708 19.727 -3.050 -2.566 0.599 C15 VMQ 6
VMQ C16 C7 C 0 1 Y N N N N N 12.826 -16.391 19.144 -3.968 -1.411 0.469 C16 VMQ 7
VMQ C17 C8 C 0 1 Y N N N N N 13.755 -15.362 19.361 -3.999 -0.671 -0.713 C17 VMQ 8
VMQ C18 C9 C 0 1 Y N N N N N 13.583 -14.105 18.778 -4.857 0.404 -0.829 C18 VMQ 9
VMQ C19 C10 C 0 1 Y N N N N N 12.464 -13.881 17.962 -5.685 0.748 0.225 C19 VMQ 10
VMQ C20 C11 C 0 1 Y N N N N N 11.541 -14.906 17.751 -5.659 0.018 1.400 C20 VMQ 11
VMQ C21 C12 C 0 1 Y N N N N N 11.714 -16.156 18.339 -4.810 -1.062 1.525 C21 VMQ 12
VMQ C22 C13 C 0 1 N N N N N N 12.221 -12.583 17.297 -6.619 1.923 0.092 C22 VMQ 13
VMQ C26 C14 C 0 1 Y N N N N N 8.304 -17.106 19.784 2.277 0.343 -0.105 C26 VMQ 14
VMQ C27 C15 C 0 1 Y N N N N N 8.267 -15.723 19.922 2.823 1.384 0.623 C27 VMQ 15
VMQ C28 C16 C 0 1 Y N N N N N 8.127 -14.919 18.797 4.172 1.380 0.928 C28 VMQ 16
VMQ C29 C17 C 0 1 Y N N N N N 8.033 -15.476 17.524 4.973 0.336 0.506 C29 VMQ 17
VMQ C3 C18 C 0 1 N N N N N N 5.765 -17.436 21.506 0.344 2.229 -3.738 C3 VMQ 18
VMQ C30 C19 C 0 1 Y N N N N N 8.086 -16.862 17.376 4.427 -0.704 -0.222 C30 VMQ 19
VMQ C31 C20 C 0 1 Y N N N N N 8.221 -17.679 18.507 3.078 -0.704 -0.522 C31 VMQ 20
VMQ C32 C21 C 0 1 N N N N N N 8.002 -17.435 16.004 5.301 -1.842 -0.683 C32 VMQ 21
VMQ C36 C22 C 0 1 N N N N N N 8.072 -13.455 19.002 4.767 2.515 1.721 C36 VMQ 22
VMQ C4 C23 C 0 1 N N N N N N 7.561 -19.074 21.092 0.625 0.650 -1.903 C4 VMQ 23
VMQ C6 C24 C 0 1 N N S N N N 8.486 -17.905 21.031 0.807 0.347 -0.438 C6 VMQ 24
VMQ C8 C25 C 0 1 N N N N N N 10.889 -17.661 20.933 -1.080 -1.084 0.135 C8 VMQ 25
VMQ F23 F1 F 0 1 N N N N N N 12.615 -11.511 18.034 -7.844 1.489 -0.425 F23 VMQ 26
VMQ F24 F2 F 0 1 N N N N N N 12.874 -12.522 16.105 -6.822 2.502 1.349 F24 VMQ 27
VMQ F25 F3 F 0 1 N N N N N N 10.912 -12.394 16.990 -6.058 2.870 -0.772 F25 VMQ 28
VMQ F33 F4 F 0 1 N N N N N N 8.100 -18.775 15.979 6.615 -1.622 -0.257 F33 VMQ 29
VMQ F34 F5 F 0 1 N N N N N N 6.838 -17.126 15.388 4.829 -3.042 -0.140 F34 VMQ 30
VMQ F35 F6 F 0 1 N N N N N N 9.010 -17.012 15.195 5.270 -1.918 -2.079 F35 VMQ 31
VMQ F37 F7 F 0 1 N N N N N N 8.754 -13.051 20.105 6.105 2.691 1.351 F37 VMQ 32
VMQ F38 F8 F 0 1 N N N N N N 8.600 -12.754 17.973 4.054 3.690 1.462 F38 VMQ 33
VMQ F39 F9 F 0 1 N N N N N N 6.788 -13.114 19.145 4.697 2.218 3.086 F39 VMQ 34
VMQ N12 N1 N 0 1 Y N N N N N 13.534 -20.263 20.818 -1.349 -4.708 0.848 N12 VMQ 35
VMQ N2 N2 N 0 1 N N N N N N 6.303 -18.766 21.598 0.622 1.928 -2.331 N2 VMQ 36
VMQ N7 N3 N 0 1 N N N N N N 9.784 -18.436 20.763 0.235 -0.967 -0.137 N7 VMQ 37
VMQ O5 O1 O 0 1 N N N N N N 7.920 -20.189 20.752 0.482 -0.255 -2.697 O5 VMQ 38
VMQ O9 O2 O 0 1 N N N N N N 10.908 -16.519 21.345 -1.791 -0.097 0.130 O9 VMQ 39
VMQ H1 H1 H 0 1 N N N N N N 4.472 -19.362 22.385 0.843 3.972 -1.913 H1 VMQ 40
VMQ H2 H2 H 0 1 N N N N N N 5.192 -20.470 21.168 0.156 3.000 -0.590 H2 VMQ 41
VMQ H3 H3 H 0 1 N N N N N N 5.878 -20.390 22.826 1.892 2.889 -0.967 H3 VMQ 42
VMQ H4 H4 H 0 1 N N N N N N 11.674 -20.040 21.763 0.233 -3.421 0.462 H4 VMQ 43
VMQ H5 H5 H 0 1 N N N N N N 15.323 -20.154 19.746 -3.021 -5.881 1.221 H5 VMQ 44
VMQ H6 H6 H 0 1 N N N N N N 14.944 -17.941 18.780 -4.597 -4.007 1.016 H6 VMQ 45
VMQ H7 H7 H 0 1 N N N N N N 14.615 -15.545 19.988 -3.353 -0.938 -1.536 H7 VMQ 46
VMQ H8 H8 H 0 1 N N N N N N 14.301 -13.317 18.953 -4.881 0.978 -1.743 H8 VMQ 47
VMQ H9 H9 H 0 1 N N N N N N 10.681 -14.727 17.123 -6.307 0.292 2.219 H9 VMQ 48
VMQ H10 H10 H 0 1 N N N N N N 10.990 -16.939 18.172 -4.790 -1.631 2.443 H10 VMQ 49
VMQ H11 H11 H 0 1 N N N N N N 8.347 -15.274 20.901 2.197 2.199 0.952 H11 VMQ 50
VMQ H12 H12 H 0 1 N N N N N N 7.920 -14.840 16.658 6.027 0.334 0.744 H12 VMQ 51
VMQ H13 H13 H 0 1 N N N N N N 4.766 -17.412 21.965 -0.728 2.372 -3.874 H13 VMQ 52
VMQ H14 H14 H 0 1 N N N N N N 6.428 -16.735 22.034 0.871 3.138 -4.026 H14 VMQ 53
VMQ H15 H15 H 0 1 N N N N N N 5.690 -17.143 20.448 0.682 1.400 -4.360 H15 VMQ 54
VMQ H16 H16 H 0 1 N N N N N N 8.261 -18.752 18.395 2.651 -1.517 -1.090 H16 VMQ 55
VMQ H17 H17 H 0 1 N N N N N N 8.442 -17.285 21.939 0.302 1.108 0.156 H17 VMQ 56
VMQ H18 H18 H 0 1 N N N N N N 9.881 -19.381 20.449 0.802 -1.754 -0.133 H18 VMQ 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VMQ F35 C32 SING N N 1
VMQ F34 C32 SING N N 2
VMQ F33 C32 SING N N 3
VMQ C32 C30 SING N N 4
VMQ F24 C22 SING N N 5
VMQ F25 C22 SING N N 6
VMQ C22 C19 SING N N 7
VMQ C22 F23 SING N N 8
VMQ C30 C29 DOUB Y N 9
VMQ C30 C31 SING Y N 10
VMQ C29 C28 SING Y N 11
VMQ C20 C19 DOUB Y N 12
VMQ C20 C21 SING Y N 13
VMQ C19 C18 SING Y N 14
VMQ F38 C36 SING N N 15
VMQ C21 C16 DOUB Y N 16
VMQ C31 C26 DOUB Y N 17
VMQ C18 C17 DOUB Y N 18
VMQ C28 C36 SING N N 19
VMQ C28 C27 DOUB Y N 20
VMQ C36 F39 SING N N 21
VMQ C36 F37 SING N N 22
VMQ C16 C17 SING Y N 23
VMQ C16 C15 SING N N 24
VMQ C14 C15 DOUB Y N 25
VMQ C14 C13 SING Y N 26
VMQ C15 C10 SING Y N 27
VMQ C26 C27 SING Y N 28
VMQ C26 C6 SING N N 29
VMQ C13 N12 DOUB Y N 30
VMQ C10 C8 SING N N 31
VMQ C10 C11 DOUB Y N 32
VMQ O5 C4 DOUB N N 33
VMQ N7 C8 SING N N 34
VMQ N7 C6 SING N N 35
VMQ N12 C11 SING Y N 36
VMQ C8 O9 DOUB N N 37
VMQ C6 C4 SING N N 38
VMQ C4 N2 SING N N 39
VMQ C3 N2 SING N N 40
VMQ N2 C1 SING N N 41
VMQ C1 H1 SING N N 42
VMQ C1 H2 SING N N 43
VMQ C1 H3 SING N N 44
VMQ C11 H4 SING N N 45
VMQ C13 H5 SING N N 46
VMQ C14 H6 SING N N 47
VMQ C17 H7 SING N N 48
VMQ C18 H8 SING N N 49
VMQ C20 H9 SING N N 50
VMQ C21 H10 SING N N 51
VMQ C27 H11 SING N N 52
VMQ C29 H12 SING N N 53
VMQ C3 H13 SING N N 54
VMQ C3 H14 SING N N 55
VMQ C3 H15 SING N N 56
VMQ C31 H16 SING N N 57
VMQ C6 H17 SING N N 58
VMQ N7 H18 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VMQ SMILES ACDLabs 12.01 O=C(NC(c1cc(cc(c1)C(F)(F)F)C(F)(F)F)C(=O)N(C)C)c1cnccc1c1ccc(cc1)C(F)(F)F
VMQ InChI InChI 1.06 InChI=1S/C25H18F9N3O2/c1-37(2)22(39)20(14-9-16(24(29,30)31)11-17(10-14)25(32,33)34)36-21(38)19-12-35-8-7-18(19)13-3-5-15(6-4-13)23(26,27)28/h3-12,20H,1-2H3,(H,36,38)/t20-/m0/s1
VMQ InChIKey InChI 1.06 DCMIBXDFFZEPBX-FQEVSTJZSA-N
VMQ SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)[C@@H](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cc(cc(c3)C(F)(F)F)C(F)(F)F
VMQ SMILES CACTVS 3.385 CN(C)C(=O)[CH](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cc(cc(c3)C(F)(F)F)C(F)(F)F
VMQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN(C)C(=O)[C@H](c1cc(cc(c1)C(F)(F)F)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F
VMQ SMILES "OpenEye OEToolkits" 2.0.7 CN(C)C(=O)C(c1cc(cc(c1)C(F)(F)F)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VMQ "SYSTEMATIC NAME" ACDLabs 12.01 N-[(1S)-1-[3,5-bis(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide
VMQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-[(1~{S})-1-[3,5-bis(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxidanylidene-ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VMQ 'Create component' 2022-09-02 RCSB
VMQ 'Initial release' 2023-05-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VMQ C1 C 4.299 -3.000 1
VMQ C10 C 9.495 1.500 2
VMQ C11 C 10.794 0.750 3
VMQ C13 C 12.093 3.000 4
VMQ C14 C 10.794 3.750 5
VMQ C15 C 9.495 3.000 6
VMQ C16 C 8.196 3.750 7
VMQ C17 C 6.897 3.000 8
VMQ C18 C 5.598 3.750 9
VMQ C19 C 5.598 5.250 10
VMQ C20 C 6.897 6.000 11
VMQ C21 C 8.196 5.250 12
VMQ C22 C 4.299 6.000 13
VMQ C26 C 6.897 -3.000 14
VMQ C27 C 5.598 -3.750 15
VMQ C28 C 5.598 -5.250 16
VMQ C29 C 6.897 -6.000 17
VMQ C3 C 3.000 -0.750 18
VMQ C30 C 8.196 -5.250 19
VMQ C31 C 8.196 -3.750 20
VMQ C32 C 9.495 -6.000 21
VMQ C36 C 4.299 -6.000 22
VMQ C4 C 5.598 -0.750 23
VMQ C6 C 6.897 -1.500 24
VMQ C8 C 8.196 0.750 25
VMQ F23 F 3.000 6.750 26
VMQ F24 F 5.049 7.299 27
VMQ F25 F 3.549 4.701 28
VMQ F33 F 8.745 -7.299 29
VMQ F34 F 10.245 -4.701 30
VMQ F35 F 10.794 -6.750 31
VMQ F37 F 3.549 -4.701 32
VMQ F38 F 3.000 -6.750 33
VMQ F39 F 5.049 -7.299 34
VMQ N12 N 12.093 1.500 35
VMQ N2 N 4.299 -1.500 36
VMQ N7 N 8.196 -0.750 37
VMQ O5 O 5.598 0.750 38
VMQ O9 O 6.897 1.500 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VMQ F35 C32 SINGLE NONE 1
VMQ F34 C32 SINGLE NONE 2
VMQ F33 C32 SINGLE NONE 3
VMQ C32 C30 SINGLE NONE 4
VMQ F24 C22 SINGLE NONE 5
VMQ F25 C22 SINGLE NONE 6
VMQ C22 C19 SINGLE NONE 7
VMQ C22 F23 SINGLE NONE 8
VMQ C30 C29 DOUBLE NONE 9
VMQ C30 C31 SINGLE NONE 10
VMQ C29 C28 SINGLE NONE 11
VMQ C20 C19 DOUBLE NONE 12
VMQ C20 C21 SINGLE NONE 13
VMQ C19 C18 SINGLE NONE 14
VMQ F38 C36 SINGLE NONE 15
VMQ C21 C16 DOUBLE NONE 16
VMQ C31 C26 DOUBLE NONE 17
VMQ C18 C17 DOUBLE NONE 18
VMQ C28 C36 SINGLE NONE 19
VMQ C28 C27 DOUBLE NONE 20
VMQ C36 F39 SINGLE NONE 21
VMQ C36 F37 SINGLE NONE 22
VMQ C16 C17 SINGLE NONE 23
VMQ C16 C15 SINGLE NONE 24
VMQ C14 C15 DOUBLE NONE 25
VMQ C14 C13 SINGLE NONE 26
VMQ C15 C10 SINGLE NONE 27
VMQ C26 C27 SINGLE NONE 28
VMQ C26 C6 SINGLE NONE 29
VMQ C13 N12 DOUBLE NONE 30
VMQ C10 C8 SINGLE NONE 31
VMQ C10 C11 DOUBLE NONE 32
VMQ O5 C4 DOUBLE NONE 33
VMQ N7 C8 SINGLE NONE 34
VMQ C6 N7 SINGLE BEGINWEDGE 35
VMQ N12 C11 SINGLE NONE 36
VMQ C8 O9 DOUBLE NONE 37
VMQ C6 C4 SINGLE NONE 38
VMQ C4 N2 SINGLE NONE 39
VMQ C3 N2 SINGLE NONE 40
VMQ N2 C1 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VMQ MurckoScaffold S1 scaffold O=C(NCc1ccccc1)c1cnccc1-c1ccccc1 InChI=1S/C19H16N2O/c22-19(21-13-15-7-3-1-4-8-15)18-14-20-12-11-17(18)16-9-5-2-6-10-16/h1-12,14H,13H2,(H,21,22) OWUNCEWWOVCUJX-UHFFFAOYSA-N
VMQ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VMQ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
VMQ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VMQ pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VMQ C10 S1 1
VMQ C11 S1 1
VMQ C13 S1 1
VMQ C14 S1 1
VMQ C15 S1 1
VMQ C16 S1 1
VMQ C17 S1 1
VMQ C18 S1 1
VMQ C19 S1 1
VMQ C20 S1 1
VMQ C21 S1 1
VMQ C26 S1 1
VMQ C27 S1 1
VMQ C28 S1 1
VMQ C29 S1 1
VMQ C30 S1 1
VMQ C31 S1 1
VMQ C6 S1 1
VMQ C8 S1 1
VMQ N12 S1 1
VMQ N7 S1 1
VMQ O9 S1 1
VMQ N2 F1 1
VMQ C4 F1 1
VMQ O5 F1 1
VMQ C6 F1 1
VMQ N7 F1 2
VMQ C8 F1 2
VMQ O9 F1 2
VMQ C10 F1 2
VMQ O5 F2 1
VMQ C4 F2 1
VMQ C6 F2 1
VMQ N7 F2 1
VMQ C16 F3 1
VMQ C21 F3 1
VMQ C20 F3 1
VMQ C19 F3 1
VMQ C18 F3 1
VMQ C17 F3 1
VMQ C26 F3 2
VMQ C31 F3 2
VMQ C30 F3 2
VMQ C29 F3 2
VMQ C28 F3 2
VMQ C27 F3 2
VMQ C11 F4 1
VMQ C10 F4 1
VMQ C15 F4 1
VMQ C14 F4 1
VMQ C13 F4 1
VMQ N12 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VMQ
_pdbe_chem_comp_rdkit_properties.exactmw 563.126
_pdbe_chem_comp_rdkit_properties.amw 563.420
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.240
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 240.155
_pdbe_chem_comp_rdkit_properties.tpsa 62.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.711
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.370
_pdbe_chem_comp_rdkit_properties.chi0v 18.060
_pdbe_chem_comp_rdkit_properties.chi1v 9.424
_pdbe_chem_comp_rdkit_properties.chi2v 4.200
_pdbe_chem_comp_rdkit_properties.chi3v 4.200
_pdbe_chem_comp_rdkit_properties.chi4v 2.552
_pdbe_chem_comp_rdkit_properties.chi0n 36.060
_pdbe_chem_comp_rdkit_properties.chi1n 18.372
_pdbe_chem_comp_rdkit_properties.chi2n 4.200
_pdbe_chem_comp_rdkit_properties.chi3n 4.200
_pdbe_chem_comp_rdkit_properties.chi4n 2.552
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.100
_pdbe_chem_comp_rdkit_properties.kappa1 13.307
_pdbe_chem_comp_rdkit_properties.kappa2 10.577
_pdbe_chem_comp_rdkit_properties.kappa3 6.863
_pdbe_chem_comp_rdkit_properties.Phi 3.609
#
_pdbe_chem_comp_external_mappings.comp_id VMQ
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168008982
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VMQ C1 -4.898 -3.505 0.856 ETKDGv3 1
VMQ C10 1.759 -2.276 0.217 ETKDGv3 2
VMQ C11 1.722 -3.610 0.059 ETKDGv3 3
VMQ C13 3.991 -3.705 -0.691 ETKDGv3 4
VMQ C14 4.081 -2.240 -0.557 ETKDGv3 5
VMQ C15 3.011 -1.541 -0.144 ETKDGv3 6
VMQ C16 3.072 -0.060 -0.125 ETKDGv3 7
VMQ C17 4.159 0.633 0.608 ETKDGv3 8
VMQ C18 4.204 1.970 0.646 ETKDGv3 9
VMQ C19 3.164 2.778 -0.043 ETKDGv3 10
VMQ C20 2.206 2.146 -0.745 ETKDGv3 11
VMQ C21 2.155 0.671 -0.781 ETKDGv3 12
VMQ C22 3.238 4.283 -0.039 ETKDGv3 13
VMQ C26 -1.768 0.335 0.111 ETKDGv3 14
VMQ C27 -1.531 0.432 -1.352 ETKDGv3 15
VMQ C28 -1.447 1.628 -1.958 ETKDGv3 16
VMQ C29 -1.542 2.862 -1.139 ETKDGv3 17
VMQ C3 -2.884 -3.338 2.395 ETKDGv3 18
VMQ C30 -1.724 2.793 0.192 ETKDGv3 19
VMQ C31 -1.877 1.463 0.834 ETKDGv3 20
VMQ C32 -1.865 4.050 1.014 ETKDGv3 21
VMQ C36 -1.158 1.712 -3.436 ETKDGv3 22
VMQ C4 -3.175 -1.727 0.454 ETKDGv3 23
VMQ C6 -1.868 -1.026 0.777 ETKDGv3 24
VMQ C8 0.602 -1.572 0.808 ETKDGv3 25
VMQ F23 3.967 4.736 1.046 ETKDGv3 26
VMQ F24 1.968 4.830 0.033 ETKDGv3 27
VMQ F25 3.849 4.713 -1.202 ETKDGv3 28
VMQ F33 -1.524 3.811 2.333 ETKDGv3 29
VMQ F34 -3.175 4.485 0.959 ETKDGv3 30
VMQ F35 -1.037 5.047 0.527 ETKDGv3 31
VMQ F37 -1.869 0.743 -4.122 ETKDGv3 32
VMQ F38 0.194 1.516 -3.649 ETKDGv3 33
VMQ F39 -1.516 2.950 -3.939 ETKDGv3 34
VMQ N12 2.881 -4.320 -0.409 ETKDGv3 35
VMQ N2 -3.644 -2.848 1.238 ETKDGv3 36
VMQ N7 -0.734 -1.859 0.368 ETKDGv3 37
VMQ O5 -3.846 -1.352 -0.548 ETKDGv3 38
VMQ O9 0.799 -0.691 1.689 ETKDGv3 39
VMQ H1 -4.809 -3.913 -0.173 ETKDGv3 40
VMQ H2 -5.730 -2.770 0.887 ETKDGv3 41
VMQ H3 -5.153 -4.342 1.540 ETKDGv3 42
VMQ H4 0.839 -4.176 0.329 ETKDGv3 43
VMQ H5 4.845 -4.270 -1.040 ETKDGv3 44
VMQ H6 5.000 -1.741 -0.842 ETKDGv3 45
VMQ H7 4.918 0.057 1.123 ETKDGv3 46
VMQ H8 5.007 2.457 1.183 ETKDGv3 47
VMQ H9 1.460 2.707 -1.294 ETKDGv3 48
VMQ H10 1.370 0.189 -1.350 ETKDGv3 49
VMQ H11 -1.422 -0.479 -1.928 ETKDGv3 50
VMQ H12 -1.459 3.828 -1.623 ETKDGv3 51
VMQ H13 -2.838 -2.552 3.176 ETKDGv3 52
VMQ H14 -3.356 -4.236 2.846 ETKDGv3 53
VMQ H15 -1.857 -3.619 2.084 ETKDGv3 54
VMQ H16 -2.061 1.407 1.900 ETKDGv3 55
VMQ H17 -1.824 -0.895 1.880 ETKDGv3 56
VMQ H18 -0.872 -2.569 -0.388 ETKDGv3 57
#