Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VD9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4 O O1 N N N 0 -3.379 -1.626 -0.664
2 S2 S S1 N N N 0 -3.291 -0.327 -0.095
3 O1 O O2 N N N 0 -3.965 0.804 -0.631
4 N3 N N1 N N N 0 -3.793 -0.469 1.476
5 C5 C C1 N Y N 0 -1.578 0.086 -0.06
6 C10 C C2 N Y N 0 -1.189 1.412 -0.025
7 C9 C C3 N Y N 0 0.153 1.739 0.002
8 C8 C C4 N Y N 0 1.111 0.733 -0.006
9 C7 C C5 N Y N 0 0.716 -0.599 -0.041
10 C6 C C6 N Y N 0 -0.627 -0.918 -0.062
11 S11 S S2 N N N 0 2.824 1.146 0.029
12 C12 C C7 N N N 0 3.635 -0.477 0.006
13 C13 C C8 N N N 0 5.153 -0.289 0.032
14 C14 C C9 N N N 0 5.837 -1.657 0.013
15 H1 H H1 N N N 0 -4.158 -1.309 1.795
16 H2 H H2 N N N 0 -3.723 0.289 2.078
17 H3 H H3 N N N 0 -1.934 2.194 -0.02
18 H4 H H4 N N N 0 0.456 2.775 0.029
19 H5 H H5 N N N 0 1.459 -1.383 -0.047
20 H6 H H6 N N N 0 -0.935 -1.953 -0.085
21 H7 H H7 N N N 0 3.325 -1.051 0.879
22 H8 H H8 N N N 0 3.351 -1.012 -0.9
23 H9 H H9 N N N 0 5.464 0.285 -0.841
24 H10 H H10 N N N 0 5.437 0.247 0.938
25 H11 H H11 N N N 0 6.919 -1.523 0.032
26 H12 H H12 N N N 0 5.527 -2.231 0.886
27 H13 H H13 N N N 0 5.553 -2.192 -0.893