data_VD9
#
_chem_comp.id VD9
_chem_comp.name 4-(propylsulfanyl)benzenesulfonamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H13 N O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-11-10
_chem_comp.pdbx_modified_date 2015-06-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 231.335
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VD9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4WW8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VD9 O4 O1 O 0 1 N N N N N N 23.021 2.585 8.708 -3.379 -1.626 -0.664 O4 VD9 1
VD9 S2 S1 S 0 1 N N N N N N 23.683 2.401 10.007 -3.291 -0.327 -0.095 S2 VD9 2
VD9 O1 O2 O 0 1 N N N N N N 24.724 1.322 10.015 -3.965 0.804 -0.631 O1 VD9 3
VD9 N3 N1 N 0 1 N N N N N N 22.615 2.141 11.164 -3.793 -0.469 1.476 N3 VD9 4
VD9 C5 C1 C 0 1 Y N N N N N 24.541 3.890 10.292 -1.578 0.086 -0.060 C5 VD9 5
VD9 C10 C2 C 0 1 Y N N N N N 25.926 3.926 10.227 -1.189 1.412 -0.025 C10 VD9 6
VD9 C9 C3 C 0 1 Y N N N N N 26.642 5.126 10.409 0.153 1.739 0.002 C9 VD9 7
VD9 C8 C4 C 0 1 Y N N N N N 25.888 6.249 10.742 1.111 0.733 -0.006 C8 VD9 8
VD9 C7 C5 C 0 1 Y N N N N N 24.493 6.282 10.858 0.716 -0.599 -0.041 C7 VD9 9
VD9 C6 C6 C 0 1 Y N N N N N 23.866 5.031 10.687 -0.627 -0.918 -0.062 C6 VD9 10
VD9 S11 S2 S 0 1 N N N N N N 26.643 7.858 10.960 2.824 1.146 0.029 S11 VD9 11
VD9 C12 C7 C 0 1 N N N N N N 28.381 7.643 10.399 3.635 -0.477 0.006 C12 VD9 12
VD9 C13 C8 C 0 1 N N N N N N 28.465 7.459 8.903 5.153 -0.289 0.032 C13 VD9 13
VD9 C14 C9 C 0 1 N N N N N N 29.909 7.231 8.497 5.837 -1.657 0.013 C14 VD9 14
VD9 H1 H1 H 0 1 N N N N N N 23.090 2.019 12.036 -4.158 -1.309 1.795 H1 VD9 15
VD9 H2 H2 H 0 1 N N N N N N 21.996 2.924 11.228 -3.723 0.289 2.078 H2 VD9 16
VD9 H3 H3 H 0 1 N N N N N N 26.469 3.013 10.032 -1.934 2.194 -0.020 H3 VD9 17
VD9 H4 H4 H 0 1 N N N N N N 27.715 5.172 10.297 0.456 2.775 0.029 H4 VD9 18
VD9 H5 H5 H 0 1 N N N N N N 23.944 7.189 11.061 1.459 -1.383 -0.047 H5 VD9 19
VD9 H6 H6 H 0 1 N N N N N N 22.805 4.960 10.874 -0.935 -1.953 -0.085 H6 VD9 20
VD9 H7 H7 H 0 1 N N N N N N 28.808 6.757 10.892 3.325 -1.051 0.879 H7 VD9 21
VD9 H8 H8 H 0 1 N N N N N N 28.960 8.535 10.682 3.351 -1.012 -0.900 H8 VD9 22
VD9 H9 H9 H 0 1 N N N N N N 28.082 8.360 8.402 5.464 0.285 -0.841 H9 VD9 23
VD9 H10 H10 H 0 1 N N N N N N 27.860 6.589 8.607 5.437 0.247 0.938 H10 VD9 24
VD9 H11 H11 H 0 1 N N N N N N 29.967 7.097 7.407 6.919 -1.523 0.032 H11 VD9 25
VD9 H12 H12 H 0 1 N N N N N N 30.514 8.101 8.792 5.527 -2.231 0.886 H12 VD9 26
VD9 H13 H13 H 0 1 N N N N N N 30.293 6.330 8.998 5.553 -2.192 -0.893 H13 VD9 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VD9 C14 C13 SING N N 1
VD9 O4 S2 DOUB N N 2
VD9 C13 C12 SING N N 3
VD9 S2 O1 DOUB N N 4
VD9 S2 C5 SING N N 5
VD9 S2 N3 SING N N 6
VD9 C10 C5 DOUB Y N 7
VD9 C10 C9 SING Y N 8
VD9 C5 C6 SING Y N 9
VD9 C12 S11 SING N N 10
VD9 C9 C8 DOUB Y N 11
VD9 C6 C7 DOUB Y N 12
VD9 C8 C7 SING Y N 13
VD9 C8 S11 SING N N 14
VD9 N3 H1 SING N N 15
VD9 N3 H2 SING N N 16
VD9 C10 H3 SING N N 17
VD9 C9 H4 SING N N 18
VD9 C7 H5 SING N N 19
VD9 C6 H6 SING N N 20
VD9 C12 H7 SING N N 21
VD9 C12 H8 SING N N 22
VD9 C13 H9 SING N N 23
VD9 C13 H10 SING N N 24
VD9 C14 H11 SING N N 25
VD9 C14 H12 SING N N 26
VD9 C14 H13 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VD9 SMILES ACDLabs 12.01 O=S(=O)(c1ccc(SCCC)cc1)N
VD9 InChI InChI 1.03 InChI=1S/C9H13NO2S2/c1-2-7-13-8-3-5-9(6-4-8)14(10,11)12/h3-6H,2,7H2,1H3,(H2,10,11,12)
VD9 InChIKey InChI 1.03 QFWWUTSCPNTDPO-UHFFFAOYSA-N
VD9 SMILES_CANONICAL CACTVS 3.385 CCCSc1ccc(cc1)[S](N)(=O)=O
VD9 SMILES CACTVS 3.385 CCCSc1ccc(cc1)[S](N)(=O)=O
VD9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CCCSc1ccc(cc1)S(=O)(=O)N
VD9 SMILES "OpenEye OEToolkits" 1.9.2 CCCSc1ccc(cc1)S(=O)(=O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VD9 "SYSTEMATIC NAME" ACDLabs 12.01 4-(propylsulfanyl)benzenesulfonamide
VD9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 4-propylsulfanylbenzenesulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VD9 'Create component' 2014-11-10 EBI
VD9 'Initial release' 2015-07-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VD9 O4 O 7.098 3.518 1
VD9 S2 S 5.598 3.518 2
VD9 O1 O 4.098 3.518 3
VD9 N3 N 5.598 5.018 4
VD9 C5 C 5.598 2.018 5
VD9 C10 C 4.299 1.268 6
VD9 C9 C 4.299 -0.233 7
VD9 C8 C 5.598 -0.983 8
VD9 C7 C 6.897 -0.233 9
VD9 C6 C 6.897 1.268 10
VD9 S11 S 5.598 -2.482 11
VD9 C12 C 4.299 -3.232 12
VD9 C13 C 4.299 -4.732 13
VD9 C14 C 3.000 -5.482 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VD9 C14 C13 SINGLE NONE 1
VD9 O4 S2 DOUBLE NONE 2
VD9 C13 C12 SINGLE NONE 3
VD9 S2 O1 DOUBLE NONE 4
VD9 S2 C5 SINGLE NONE 5
VD9 S2 N3 SINGLE NONE 6
VD9 C10 C5 DOUBLE NONE 7
VD9 C10 C9 SINGLE NONE 8
VD9 C5 C6 SINGLE NONE 9
VD9 C12 S11 SINGLE NONE 10
VD9 C9 C8 DOUBLE NONE 11
VD9 C6 C7 DOUBLE NONE 12
VD9 C8 C7 SINGLE NONE 13
VD9 C8 S11 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VD9 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VD9 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VD9 C5 S1 1
VD9 C10 S1 1
VD9 C9 S1 1
VD9 C8 S1 1
VD9 C7 S1 1
VD9 C6 S1 1
VD9 C5 F1 1
VD9 C10 F1 1
VD9 C9 F1 1
VD9 C8 F1 1
VD9 C7 F1 1
VD9 C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VD9
_pdbe_chem_comp_rdkit_properties.exactmw 231.039
_pdbe_chem_comp_rdkit_properties.amw 231.342
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.131
_pdbe_chem_comp_rdkit_properties.tpsa 60.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.620
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.970
_pdbe_chem_comp_rdkit_properties.chi0v 8.213
_pdbe_chem_comp_rdkit_properties.chi1v 5.385
_pdbe_chem_comp_rdkit_properties.chi2v 2.374
_pdbe_chem_comp_rdkit_properties.chi3v 2.374
_pdbe_chem_comp_rdkit_properties.chi4v 1.263
_pdbe_chem_comp_rdkit_properties.chi0n 19.580
_pdbe_chem_comp_rdkit_properties.chi1n 9.523
_pdbe_chem_comp_rdkit_properties.chi2n 1.041
_pdbe_chem_comp_rdkit_properties.chi3n 1.041
_pdbe_chem_comp_rdkit_properties.chi4n 0.546
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.520
_pdbe_chem_comp_rdkit_properties.kappa1 2.994
_pdbe_chem_comp_rdkit_properties.kappa2 4.816
_pdbe_chem_comp_rdkit_properties.kappa3 3.323
_pdbe_chem_comp_rdkit_properties.Phi 1.030
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VD9 UniChem ZINC ZINC000095590010
VD9 UniChem PubChem 71720662
VD9 UniChem BindingDb 50429904
VD9 UniChem BRENDA 271012
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VD9 O4 -4.449 -1.769 -1.158 ETKDGv3 1
VD9 S2 -4.183 -0.609 -0.240 ETKDGv3 2
VD9 O1 -4.530 -1.015 1.165 ETKDGv3 3
VD9 N3 -5.158 0.738 -0.712 ETKDGv3 4
VD9 C5 -2.483 -0.158 -0.323 ETKDGv3 5
VD9 C10 -1.921 0.548 0.671 ETKDGv3 6
VD9 C9 -0.498 0.936 0.595 ETKDGv3 7
VD9 C8 0.238 0.587 -0.470 ETKDGv3 8
VD9 C7 -0.382 -0.178 -1.574 ETKDGv3 9
VD9 C6 -1.671 -0.532 -1.505 ETKDGv3 10
VD9 S11 1.966 1.057 -0.570 ETKDGv3 11
VD9 C12 2.555 -0.478 0.226 ETKDGv3 12
VD9 C13 4.080 -0.477 0.359 ETKDGv3 13
VD9 C14 4.570 0.528 1.400 ETKDGv3 14
VD9 H1 -4.913 0.959 -1.703 ETKDGv3 15
VD9 H2 -6.150 0.412 -0.713 ETKDGv3 16
VD9 H3 -2.502 0.842 1.537 ETKDGv3 17
VD9 H4 -0.055 1.500 1.406 ETKDGv3 18
VD9 H5 0.208 -0.454 -2.438 ETKDGv3 19
VD9 H6 -2.117 -1.089 -2.318 ETKDGv3 20
VD9 H7 2.253 -1.343 -0.402 ETKDGv3 21
VD9 H8 2.087 -0.592 1.228 ETKDGv3 22
VD9 H9 4.411 -1.493 0.666 ETKDGv3 23
VD9 H10 4.544 -0.252 -0.626 ETKDGv3 24
VD9 H11 4.120 0.308 2.391 ETKDGv3 25
VD9 H12 4.307 1.564 1.099 ETKDGv3 26
VD9 H13 5.674 0.459 1.490 ETKDGv3 27
#