Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V6B

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -8.863 1.866 -0.481
2 C2 C C1 N N N 0 -6.639 0.863 -0.32
3 O2 O O1 N N N 0 -9.145 2.272 1.711
4 N3 N N2 N N N 0 1.866 -0.259 0.153
5 C4 C C2 N N N 0 -9.226 2.545 -1.735
6 N4 N N3 N Y N 0 0.091 -1.763 0.032
7 C5 C C3 N N N 0 -9.956 3.817 -1.265
8 C6 C C4 N N N 0 -9.303 2.598 0.552
9 BR1 BR BR1 N N N 0 3.52 0.285 2.977
10 C17 C C5 N Y N 0 4.516 0.768 1.443
11 C16 C C6 N Y N 0 5.898 0.765 1.487
12 C14 C C7 N Y N 0 6.626 1.118 0.366
13 C15 C C8 N N N 0 8.132 1.115 0.414
14 C13 C C9 N Y N 0 5.971 1.474 -0.8
15 BR BR BR2 N N N 0 6.966 1.964 -2.331
16 C12 C C10 N Y N 0 4.589 1.476 -0.844
17 C11 C C11 N Y N 0 3.861 1.118 0.276
18 C10 C C12 N N N 0 2.355 1.12 0.228
19 C9 C C13 N Y N 0 0.511 -0.508 0.1
20 N2 N N4 N Y N 0 -0.333 0.517 0.118
21 C8 C C14 N Y N 0 -1.638 0.327 0.068
22 C18 C C15 N Y N 0 -1.206 -2.044 -0.021
23 N5 N N5 N N N 0 -1.638 -3.351 -0.091
24 C19 C C16 N N N 0 -0.665 -4.438 -0.227
25 C23 C C17 N N N 0 -0.357 -4.688 -1.718
26 C22 C C18 N N N 0 -0.199 -6.225 -1.821
27 C21 C C19 N N N 0 -1.288 -6.747 -0.85
28 C20 C C20 N N N 0 -1.257 -5.747 0.325
29 C7 C C21 N Y N 0 -2.133 -0.98 -0.004
30 C C C22 N N N 0 -3.581 -1.238 -0.06
31 O O O2 N N N 0 -3.997 -2.38 -0.019
32 N N N6 N N N 0 -4.446 -0.209 -0.157
33 C1 C C23 N N N 0 -5.887 -0.466 -0.212
34 C3 C C24 N N N 0 -8.144 0.594 -0.378
35 O1 O O3 N N N 0 -9.93 3.723 0.189
36 H1 H H1 N N N 0 -6.413 1.479 0.55
37 H2 H H2 N N N 0 -6.327 1.384 -1.225
38 H3 H H3 N N N 0 2.496 -0.996 0.141
39 H4 H H4 N N N 0 -8.332 2.804 -2.302
40 H5 H H5 N N N 0 -9.888 1.918 -2.332
41 H6 H H6 N N N 0 -9.422 4.707 -1.6
42 H7 H H7 N N N 0 -10.984 3.828 -1.628
43 H8 H H8 N N N 0 6.41 0.488 2.397
44 H9 H H9 N N N 0 8.503 0.132 0.121
45 H10 H H10 N N N 0 8.519 1.868 -0.273
46 H11 H H11 N N N 0 8.464 1.342 1.427
47 H12 H H12 N N N 0 4.078 1.753 -1.754
48 H13 H H13 N N N 0 2.02 1.673 -0.65
49 H14 H H14 N N N 0 1.964 1.596 1.128
50 H15 H H15 N N N 0 -2.315 1.169 0.084
51 H16 H H16 N N N 0 -2.586 -3.551 -0.051
52 H17 H H17 N N N 0 0.251 -4.188 0.307
53 H18 H H18 N N N 0 -1.184 -4.347 -2.341
54 H19 H H19 N N N 0 0.568 -4.189 -2.005
55 H20 H H20 N N N 0 -0.393 -6.567 -2.837
56 H21 H H21 N N N 0 0.793 -6.535 -1.491
57 H22 H H22 N N N 0 -2.265 -6.738 -1.332
58 H23 H H23 N N N 0 -1.042 -7.751 -0.505
59 H24 H H24 N N N 0 -0.627 -6.132 1.127
60 H25 H H25 N N N 0 -2.268 -5.573 0.694
61 H26 H H26 N N N 0 -4.114 0.702 -0.189
62 H27 H H27 N N N 0 -6.199 -0.987 0.693
63 H28 H H28 N N N 0 -6.113 -1.082 -1.082
64 H29 H H29 N N N 0 -8.455 0.073 0.527
65 H30 H H30 N N N 0 -8.369 -0.022 -1.248