data_V6B
#
_chem_comp.id V6B
_chem_comp.name
2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclopentylamino)-N-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H30 Br2 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-04-19
_chem_comp.pdbx_modified_date 2021-05-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 610.341
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V6B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7OAK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V6B N1 N1 N 0 1 N N N N N N 7.039 11.853 -16.879 -8.863 1.866 -0.481 N1 V6B 1
V6B C2 C1 C 0 1 N N N N N N 7.415 10.256 -15.009 -6.639 0.863 -0.320 C2 V6B 2
V6B O2 O1 O 0 1 N N N N N N 5.110 10.627 -16.944 -9.145 2.272 1.711 O2 V6B 3
V6B N3 N2 N 0 1 N N N N N N 12.961 4.204 -12.921 1.866 -0.259 0.153 N3 V6B 4
V6B C4 C2 C 0 1 N N N N N N 8.058 12.250 -17.847 -9.226 2.545 -1.735 C4 V6B 5
V6B N4 N3 N 0 1 Y N N N N N 10.915 4.950 -12.230 0.091 -1.763 0.032 N4 V6B 6
V6B C5 C3 C 0 1 N N N N N N 7.290 12.115 -19.138 -9.956 3.817 -1.265 C5 V6B 7
V6B C6 C4 C 0 1 N N N N N N 6.000 11.243 -17.465 -9.303 2.598 0.552 C6 V6B 8
V6B BR1 BR1 BR 0 0 N N N N N N 12.022 1.897 -9.170 3.520 0.285 2.977 BR1 V6B 9
V6B C17 C5 C 0 1 Y N N N N N 11.344 1.524 -10.895 4.516 0.768 1.443 C17 V6B 10
V6B C16 C6 C 0 1 Y N N N N N 10.331 0.591 -11.002 5.898 0.765 1.487 C16 V6B 11
V6B C14 C7 C 0 1 Y N N N N N 9.829 0.216 -12.237 6.626 1.118 0.366 C14 V6B 12
V6B C15 C8 C 0 1 N N N N N N 8.652 -0.713 -12.328 8.132 1.115 0.414 C15 V6B 13
V6B C13 C9 C 0 1 Y N N N N N 10.420 0.797 -13.347 5.971 1.474 -0.800 C13 V6B 14
V6B BR BR2 BR 0 0 N N N N N N 9.985 0.187 -15.069 6.966 1.964 -2.331 BR V6B 15
V6B C12 C10 C 0 1 Y N N N N N 11.411 1.754 -13.246 4.589 1.476 -0.844 C12 V6B 16
V6B C11 C11 C 0 1 Y N N N N N 11.900 2.143 -12.007 3.861 1.118 0.276 C11 V6B 17
V6B C10 C12 C 0 1 N N N N N N 12.995 3.176 -11.896 2.355 1.120 0.228 C10 V6B 18
V6B C9 C13 C 0 1 Y N N N N N 11.970 5.112 -13.026 0.511 -0.508 0.100 C9 V6B 19
V6B N2 N4 N 0 1 Y N N N N N 12.103 6.031 -13.989 -0.333 0.517 0.118 N2 V6B 20
V6B C8 C14 C 0 1 Y N N N N N 11.062 6.849 -14.152 -1.638 0.327 0.068 C8 V6B 21
V6B C18 C15 C 0 1 Y N N N N N 9.845 5.753 -12.425 -1.206 -2.044 -0.021 C18 V6B 22
V6B N5 N5 N 0 1 N N N N N N 8.786 5.618 -11.602 -1.638 -3.351 -0.091 N5 V6B 23
V6B C19 C16 C 0 1 N N N N N N 8.580 4.490 -10.710 -0.665 -4.438 -0.227 C19 V6B 24
V6B C23 C17 C 0 1 N N N N N N 7.844 3.334 -11.405 -0.357 -4.688 -1.718 C23 V6B 25
V6B C22 C18 C 0 1 N N N N N N 6.726 2.930 -10.435 -0.199 -6.225 -1.821 C22 V6B 26
V6B C21 C19 C 0 1 N N N N N N 7.041 3.564 -9.166 -1.288 -6.747 -0.850 C21 V6B 27
V6B C20 C20 C 0 1 N N N N N N 7.672 4.848 -9.545 -1.257 -5.747 0.325 C20 V6B 28
V6B C7 C21 C 0 1 Y N N N N N 9.879 6.762 -13.434 -2.133 -0.980 -0.004 C7 V6B 29
V6B C C22 C 0 1 N N N N N N 8.778 7.731 -13.735 -3.581 -1.238 -0.060 C V6B 30
V6B O O2 O 0 1 N N N N N N 8.014 8.110 -12.844 -3.997 -2.380 -0.019 O V6B 31
V6B N N6 N 0 1 N N N N N N 8.648 8.133 -15.006 -4.446 -0.209 -0.157 N V6B 32
V6B C1 C23 C 0 1 N N N N N N 8.683 9.538 -15.384 -5.887 -0.466 -0.212 C1 V6B 33
V6B C3 C24 C 0 1 N N N N N N 7.343 11.701 -15.459 -8.144 0.594 -0.378 C3 V6B 34
V6B O1 O3 O 0 1 N N N N N N 6.086 11.380 -18.799 -9.930 3.723 0.189 O1 V6B 35
V6B H1 H1 H 0 1 N N N N N N 7.321 10.234 -13.913 -6.413 1.479 0.550 H1 V6B 36
V6B H2 H2 H 0 1 N N N N N N 6.570 9.715 -15.460 -6.327 1.384 -1.225 H2 V6B 37
V6B H3 H3 H 0 1 N N N N N N 12.983 3.720 -13.796 2.496 -0.996 0.141 H3 V6B 38
V6B H4 H4 H 0 1 N N N N N N 8.926 11.575 -17.820 -8.332 2.804 -2.302 H4 V6B 39
V6B H5 H5 H 0 1 N N N N N N 8.392 13.285 -17.681 -9.888 1.918 -2.332 H5 V6B 40
V6B H6 H6 H 0 1 N N N N N N 7.882 11.561 -19.881 -9.422 4.707 -1.600 H6 V6B 41
V6B H7 H7 H 0 1 N N N N N N 7.035 13.107 -19.539 -10.984 3.828 -1.628 H7 V6B 42
V6B H8 H8 H 0 1 N N N N N N 9.923 0.146 -10.106 6.410 0.488 2.397 H8 V6B 43
V6B H9 H9 H 0 1 N N N N N N 9.008 -1.751 -12.396 8.503 0.132 0.121 H9 V6B 44
V6B H10 H10 H 0 1 N N N N N N 8.025 -0.599 -11.432 8.519 1.868 -0.273 H10 V6B 45
V6B H11 H11 H 0 1 N N N N N N 8.061 -0.469 -13.223 8.464 1.342 1.427 H11 V6B 46
V6B H12 H12 H 0 1 N N N N N N 11.810 2.205 -14.142 4.078 1.753 -1.754 H12 V6B 47
V6B H13 H13 H 0 1 N N N N N N 13.963 2.658 -11.961 2.020 1.673 -0.650 H13 V6B 48
V6B H14 H14 H 0 1 N N N N N N 12.906 3.666 -10.915 1.964 1.596 1.128 H14 V6B 49
V6B H15 H15 H 0 1 N N N N N N 11.146 7.631 -14.892 -2.315 1.169 0.084 H15 V6B 50
V6B H16 H16 H 0 1 N N N N N N 8.796 6.428 -11.015 -2.586 -3.551 -0.051 H16 V6B 51
V6B H17 H17 H 0 1 N N N N N N 9.544 4.126 -10.324 0.251 -4.188 0.307 H17 V6B 52
V6B H18 H18 H 0 1 N N N N N N 7.421 3.667 -12.364 -1.184 -4.347 -2.341 H18 V6B 53
V6B H19 H19 H 0 1 N N N N N N 8.528 2.490 -11.579 0.568 -4.189 -2.005 H19 V6B 54
V6B H20 H20 H 0 1 N N N N N N 5.753 3.283 -10.807 -0.393 -6.567 -2.837 H20 V6B 55
V6B H21 H21 H 0 1 N N N N N N 6.699 1.837 -10.319 0.793 -6.535 -1.491 H21 V6B 56
V6B H22 H22 H 0 1 N N N N N N 6.127 3.737 -8.580 -2.265 -6.738 -1.332 H22 V6B 57
V6B H23 H23 H 0 1 N N N N N N 7.738 2.944 -8.583 -1.042 -7.751 -0.505 H23 V6B 58
V6B H24 H24 H 0 1 N N N N N N 8.256 5.258 -8.707 -0.627 -6.132 1.127 H24 V6B 59
V6B H25 H25 H 0 1 N N N N N N 6.911 5.580 -9.854 -2.268 -5.573 0.694 H25 V6B 60
V6B H26 H26 H 0 1 N N N N N N 8.523 7.444 -15.720 -4.114 0.702 -0.189 H26 V6B 61
V6B H27 H27 H 0 1 N N N N N N 8.822 9.609 -16.473 -6.199 -0.987 0.693 H27 V6B 62
V6B H28 H28 H 0 1 N N N N N N 9.529 10.022 -14.874 -6.113 -1.082 -1.082 H28 V6B 63
V6B H29 H29 H 0 1 N N N N N N 8.314 12.177 -15.258 -8.455 0.073 0.527 H29 V6B 64
V6B H30 H30 H 0 1 N N N N N N 6.558 12.208 -14.878 -8.369 -0.022 -1.248 H30 V6B 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V6B C5 O1 SING N N 1
V6B C5 C4 SING N N 2
V6B O1 C6 SING N N 3
V6B C4 N1 SING N N 4
V6B C6 O2 DOUB N N 5
V6B C6 N1 SING N N 6
V6B N1 C3 SING N N 7
V6B C3 C2 SING N N 8
V6B C1 C2 SING N N 9
V6B C1 N SING N N 10
V6B BR C13 SING N N 11
V6B N C SING N N 12
V6B C8 N2 DOUB Y N 13
V6B C8 C7 SING Y N 14
V6B N2 C9 SING Y N 15
V6B C C7 SING N N 16
V6B C O DOUB N N 17
V6B C7 C18 DOUB Y N 18
V6B C13 C12 DOUB Y N 19
V6B C13 C14 SING Y N 20
V6B C12 C11 SING Y N 21
V6B C9 N3 SING N N 22
V6B C9 N4 DOUB Y N 23
V6B N3 C10 SING N N 24
V6B C18 N4 SING Y N 25
V6B C18 N5 SING N N 26
V6B C15 C14 SING N N 27
V6B C14 C16 DOUB Y N 28
V6B C11 C10 SING N N 29
V6B C11 C17 DOUB Y N 30
V6B N5 C19 SING N N 31
V6B C23 C19 SING N N 32
V6B C23 C22 SING N N 33
V6B C16 C17 SING Y N 34
V6B C17 BR1 SING N N 35
V6B C19 C20 SING N N 36
V6B C22 C21 SING N N 37
V6B C20 C21 SING N N 38
V6B C2 H1 SING N N 39
V6B C2 H2 SING N N 40
V6B N3 H3 SING N N 41
V6B C4 H4 SING N N 42
V6B C4 H5 SING N N 43
V6B C5 H6 SING N N 44
V6B C5 H7 SING N N 45
V6B C16 H8 SING N N 46
V6B C15 H9 SING N N 47
V6B C15 H10 SING N N 48
V6B C15 H11 SING N N 49
V6B C12 H12 SING N N 50
V6B C10 H13 SING N N 51
V6B C10 H14 SING N N 52
V6B C8 H15 SING N N 53
V6B N5 H16 SING N N 54
V6B C19 H17 SING N N 55
V6B C23 H18 SING N N 56
V6B C23 H19 SING N N 57
V6B C22 H20 SING N N 58
V6B C22 H21 SING N N 59
V6B C21 H22 SING N N 60
V6B C21 H23 SING N N 61
V6B C20 H24 SING N N 62
V6B C20 H25 SING N N 63
V6B N H26 SING N N 64
V6B C1 H27 SING N N 65
V6B C1 H28 SING N N 66
V6B C3 H29 SING N N 67
V6B C3 H30 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V6B InChI InChI 1.03 InChI=1S/C24H30Br2N6O3/c1-15-11-20(26)16(12-19(15)25)13-28-23-29-14-18(21(31-23)30-17-5-2-3-6-17)22(33)27-7-4-8-32-9-10-35-24(32)34/h11-12,14,17H,2-10,13H2,1H3,(H,27,33)(H2,28,29,30,31)
V6B InChIKey InChI 1.03 BPLPIBNWDLPUKP-UHFFFAOYSA-N
V6B SMILES_CANONICAL CACTVS 3.385 Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCC4)n2)cc1Br
V6B SMILES CACTVS 3.385 Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCC4)n2)cc1Br
V6B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCOC4=O)Br
V6B SMILES "OpenEye OEToolkits" 2.0.7 Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCOC4=O)Br
#
_pdbx_chem_comp_identifier.comp_id V6B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclopentylamino)-~{N}-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V6B 'Create component' 2021-04-20 PDBE
V6B 'Initial release' 2021-05-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
V6B N1 N 5.374 0.973 1
V6B C2 C 7.972 0.973 2
V6B O2 O 6.332 -1.522 3
V6B N3 N 17.065 -1.277 4
V6B C4 C 4.004 1.583 5
V6B N4 N 15.766 0.973 6
V6B C5 C 3.000 0.469 7
V6B C6 C 5.217 -0.519 8
V6B BR1 Br 17.065 -5.777 9
V6B C17 C 18.364 -5.027 10
V6B C16 C 19.663 -5.777 11
V6B C14 C 20.962 -5.027 12
V6B C15 C 22.262 -5.777 13
V6B C13 C 20.962 -3.527 14
V6B BR Br 22.262 -2.777 15
V6B C12 C 19.663 -2.777 16
V6B C11 C 18.364 -3.527 17
V6B C10 C 17.065 -2.777 18
V6B C9 C 15.766 -0.527 19
V6B N2 N 14.467 -1.277 20
V6B C8 C 13.168 -0.527 21
V6B C18 C 14.467 1.723 22
V6B N5 N 14.467 3.223 23
V6B C19 C 15.766 3.973 24
V6B C23 C 17.137 3.363 25
V6B C22 C 18.140 4.478 26
V6B C21 C 17.390 5.777 27
V6B C20 C 15.923 5.465 28
V6B C7 C 13.168 0.973 29
V6B C C 11.869 1.723 30
V6B O O 11.869 3.223 31
V6B N N 10.570 0.973 32
V6B C1 C 9.271 1.723 33
V6B C3 C 6.673 1.723 34
V6B O1 O 3.750 -0.830 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
V6B C5 O1 SINGLE NONE 1
V6B C5 C4 SINGLE NONE 2
V6B O1 C6 SINGLE NONE 3
V6B C4 N1 SINGLE NONE 4
V6B C6 O2 DOUBLE NONE 5
V6B C6 N1 SINGLE NONE 6
V6B N1 C3 SINGLE NONE 7
V6B C3 C2 SINGLE NONE 8
V6B C1 C2 SINGLE NONE 9
V6B C1 N SINGLE NONE 10
V6B BR C13 SINGLE NONE 11
V6B N C SINGLE NONE 12
V6B C8 N2 DOUBLE NONE 13
V6B C8 C7 SINGLE NONE 14
V6B N2 C9 SINGLE NONE 15
V6B C C7 SINGLE NONE 16
V6B C O DOUBLE NONE 17
V6B C7 C18 DOUBLE NONE 18
V6B C13 C12 DOUBLE NONE 19
V6B C13 C14 SINGLE NONE 20
V6B C12 C11 SINGLE NONE 21
V6B C9 N3 SINGLE NONE 22
V6B C9 N4 DOUBLE NONE 23
V6B N3 C10 SINGLE NONE 24
V6B C18 N4 SINGLE NONE 25
V6B C18 N5 SINGLE NONE 26
V6B C15 C14 SINGLE NONE 27
V6B C14 C16 DOUBLE NONE 28
V6B C11 C10 SINGLE NONE 29
V6B C11 C17 DOUBLE NONE 30
V6B N5 C19 SINGLE NONE 31
V6B C23 C19 SINGLE NONE 32
V6B C23 C22 SINGLE NONE 33
V6B C16 C17 SINGLE NONE 34
V6B C17 BR1 SINGLE NONE 35
V6B C19 C20 SINGLE NONE 36
V6B C22 C21 SINGLE NONE 37
V6B C20 C21 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
V6B MurckoScaffold S1 scaffold O=C(NCCCN1CCOC1=O)c1cnc(NCc2ccccc2)nc1NC1CCCC1 InChI=1S/C23H30N6O3/c30-21(24-11-6-12-29-13-14-32-23(29)31)19-16-26-22(25-15-17-7-2-1-3-8-17)28-20(19)27-18-9-4-5-10-18/h1-3,7-8,16,18H,4-6,9-15H2,(H,24,30)(H2,25,26,27,28) JUMUQMOXBCNSMK-UHFFFAOYSA-N
V6B amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
V6B cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
V6B phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
V6B pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
V6B Z54628578 F5 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
V6B N1 S1 1
V6B C2 S1 1
V6B O2 S1 1
V6B N3 S1 1
V6B C4 S1 1
V6B N4 S1 1
V6B C5 S1 1
V6B C6 S1 1
V6B C17 S1 1
V6B C16 S1 1
V6B C14 S1 1
V6B C13 S1 1
V6B C12 S1 1
V6B C11 S1 1
V6B C10 S1 1
V6B C9 S1 1
V6B N2 S1 1
V6B C8 S1 1
V6B C18 S1 1
V6B N5 S1 1
V6B C19 S1 1
V6B C23 S1 1
V6B C22 S1 1
V6B C21 S1 1
V6B C20 S1 1
V6B C7 S1 1
V6B C S1 1
V6B O S1 1
V6B N S1 1
V6B C1 S1 1
V6B C3 S1 1
V6B O1 S1 1
V6B N F1 1
V6B C F1 1
V6B O F1 1
V6B C7 F1 1
V6B C19 F2 1
V6B C23 F2 1
V6B C22 F2 1
V6B C21 F2 1
V6B C20 F2 1
V6B C17 F3 1
V6B C11 F3 1
V6B C12 F3 1
V6B C13 F3 1
V6B C14 F3 1
V6B C16 F3 1
V6B C7 F4 1
V6B C8 F4 1
V6B N2 F4 1
V6B C9 F4 1
V6B N4 F4 1
V6B C18 F4 1
V6B C10 F5 1
V6B N3 F5 1
V6B C9 F5 1
V6B N2 F5 1
V6B C8 F5 1
V6B C7 F5 1
V6B C18 F5 1
V6B N4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id V6B
_pdbe_chem_comp_rdkit_properties.exactmw 608.075
_pdbe_chem_comp_rdkit_properties.amw 610.351
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 263.930
_pdbe_chem_comp_rdkit_properties.tpsa 108.480
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.923
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.242
_pdbe_chem_comp_rdkit_properties.chi0v 19.836
_pdbe_chem_comp_rdkit_properties.chi1v 10.437
_pdbe_chem_comp_rdkit_properties.chi2v 4.778
_pdbe_chem_comp_rdkit_properties.chi3v 4.778
_pdbe_chem_comp_rdkit_properties.chi4v 2.793
_pdbe_chem_comp_rdkit_properties.chi0n 46.664
_pdbe_chem_comp_rdkit_properties.chi1n 23.693
_pdbe_chem_comp_rdkit_properties.chi2n 3.589
_pdbe_chem_comp_rdkit_properties.chi3n 3.589
_pdbe_chem_comp_rdkit_properties.chi4n 2.110
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.400
_pdbe_chem_comp_rdkit_properties.kappa1 7.565
_pdbe_chem_comp_rdkit_properties.kappa2 12.027
_pdbe_chem_comp_rdkit_properties.kappa3 6.845
_pdbe_chem_comp_rdkit_properties.Phi 2.599
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
V6B UniChem PubChem 155908701
V6B UniChem 'Probes And Drugs' PD164167
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
V6B N1 -4.720 -0.577 2.598 ETKDGv3 1
V6B C2 -4.524 0.302 0.290 ETKDGv3 2
V6B O2 -2.681 -1.497 3.352 ETKDGv3 3
V6B N3 4.029 -0.244 0.312 ETKDGv3 4
V6B C4 -6.119 -0.909 2.832 ETKDGv3 5
V6B N4 2.009 0.930 -0.055 ETKDGv3 6
V6B C5 -6.089 -2.136 3.777 ETKDGv3 7
V6B C6 -3.940 -1.502 3.325 ETKDGv3 8
V6B BR1 6.718 -0.018 -1.704 ETKDGv3 9
V6B C17 5.665 -1.603 -1.956 ETKDGv3 10
V6B C16 5.714 -2.250 -3.285 ETKDGv3 11
V6B C14 4.998 -3.360 -3.537 ETKDGv3 12
V6B C15 5.051 -4.009 -4.892 ETKDGv3 13
V6B C13 4.154 -3.940 -2.460 ETKDGv3 14
V6B BR 3.107 -5.517 -2.760 ETKDGv3 15
V6B C12 4.113 -3.358 -1.255 ETKDGv3 16
V6B C11 4.898 -2.130 -0.976 ETKDGv3 17
V6B C10 4.790 -1.490 0.386 ETKDGv3 18
V6B C9 2.619 -0.213 0.061 ETKDGv3 19
V6B N2 1.871 -1.432 -0.062 ETKDGv3 20
V6B C8 0.594 -1.414 -0.299 ETKDGv3 21
V6B C18 0.595 1.015 -0.311 ETKDGv3 22
V6B N5 -0.034 2.309 -0.350 ETKDGv3 23
V6B C19 0.750 3.549 -0.333 ETKDGv3 24
V6B C23 -0.049 4.699 -0.935 ETKDGv3 25
V6B C22 -0.819 5.331 0.221 ETKDGv3 26
V6B C21 -0.165 4.839 1.511 ETKDGv3 27
V6B C20 1.024 3.980 1.101 ETKDGv3 28
V6B C7 -0.119 -0.126 -0.450 ETKDGv3 29
V6B C -1.560 -0.138 -0.774 ETKDGv3 30
V6B O -2.002 0.611 -1.689 ETKDGv3 31
V6B N -2.452 -1.012 -0.068 ETKDGv3 32
V6B C1 -3.901 -0.989 -0.264 ETKDGv3 33
V6B C3 -4.224 0.529 1.779 ETKDGv3 34
V6B O1 -4.711 -2.410 4.010 ETKDGv3 35
V6B H1 -5.624 0.265 0.138 ETKDGv3 36
V6B H2 -4.147 1.175 -0.285 ETKDGv3 37
V6B H3 4.533 0.659 0.463 ETKDGv3 38
V6B H4 -6.617 -1.169 1.873 ETKDGv3 39
V6B H5 -6.638 -0.052 3.312 ETKDGv3 40
V6B H6 -6.572 -3.015 3.300 ETKDGv3 41
V6B H7 -6.593 -1.904 4.740 ETKDGv3 42
V6B H8 6.336 -1.810 -4.055 ETKDGv3 43
V6B H9 5.422 -5.050 -4.791 ETKDGv3 44
V6B H10 4.033 -4.025 -5.336 ETKDGv3 45
V6B H11 5.725 -3.465 -5.589 ETKDGv3 46
V6B H12 3.496 -3.788 -0.476 ETKDGv3 47
V6B H13 4.306 -2.176 1.113 ETKDGv3 48
V6B H14 5.809 -1.281 0.779 ETKDGv3 49
V6B H15 0.063 -2.351 -0.402 ETKDGv3 50
V6B H16 -1.065 2.384 -0.196 ETKDGv3 51
V6B H17 1.699 3.410 -0.898 ETKDGv3 52
V6B H18 -0.733 4.355 -1.742 ETKDGv3 53
V6B H19 0.653 5.449 -1.362 ETKDGv3 54
V6B H20 -1.883 5.009 0.188 ETKDGv3 55
V6B H21 -0.778 6.440 0.155 ETKDGv3 56
V6B H22 -0.890 4.223 2.089 ETKDGv3 57
V6B H23 0.165 5.692 2.143 ETKDGv3 58
V6B H24 1.154 3.112 1.784 ETKDGv3 59
V6B H25 1.950 4.595 1.128 ETKDGv3 60
V6B H26 -2.061 -1.687 0.627 ETKDGv3 61
V6B H27 -4.130 -1.078 -1.348 ETKDGv3 62
V6B H28 -4.356 -1.866 0.243 ETKDGv3 63
V6B H29 -3.130 0.661 1.927 ETKDGv3 64
V6B H30 -4.715 1.470 2.107 ETKDGv3 65
#