Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : USQ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -6.22 -0.597 -0.847
2 C2 C C2 N N N 0 -5.703 -1.576 -0.084
3 N3 N N3 N N N 0 -6.115 -2.85 -0.22
4 C4 C C4 N N N 0 -7.051 -3.167 -1.137
5 C5 C C5 N N N 0 -7.6 -2.147 -1.951
6 C6 C C6 N N N 0 -7.172 -0.876 -1.79
7 O2 O O2 N N N 0 -4.858 -1.305 0.748
8 O4 O O4 N N N 0 -7.421 -4.32 -1.265
9 C1D C C1* R N N 0 -5.755 0.782 -0.672
10 C2D C C2* R N N 0 -6.046 1.281 0.766
11 O2D O O2* N N N 0 -7.367 1.818 0.862
12 C3D C C3* S N N 0 -4.982 2.396 0.944
13 C4D C C4* R N N 0 -3.908 2.059 -0.108
14 O4D O O4* N N N 0 -4.316 0.849 -0.768
15 O3D O O3* N N N 0 -5.556 3.68 0.69
16 C5D C C5* N N N 0 -2.557 1.848 0.577
17 O5D O O5* N N N 0 -1.547 1.644 -0.413
18 PA P PA R N N 0 -0.159 1.43 0.375
19 O1A O O1A N N N 0 0.077 2.577 1.28
20 O2A O O2A N N N 0 -0.236 0.073 1.238
21 O3A O O3A N N N 0 1.049 1.324 -0.685
22 PB P PB R N N 0 2.415 1.513 0.147
23 O1B O O1B N N N 0 2.357 0.699 1.381
24 O2B O O2B N N N 0 2.596 3.065 0.535
25 O3B O O3B N N N 0 3.661 1.036 -0.754
26 C1' C C1' R N N 0 4.823 1.115 0.074
27 C2' C C2' R N N 0 6.043 1.427 -0.797
28 C3' C C3' S N N 0 6.202 0.32 -1.846
29 C4' C C4' S N N 0 6.235 -1.036 -1.131
30 C5' C C5' S N N 0 4.999 -1.159 -0.237
31 C6' C C6' N N N 0 5.006 -2.523 0.456
32 O2' O O2' N N N 0 5.858 2.686 -1.446
33 O3' O O3' N N N 0 7.422 0.513 -2.565
34 O4' O O4' N N N 0 6.233 -2.087 -2.1
35 O5' O O5' N N N 0 5.011 -0.128 0.748
36 S S S N N N 0 3.47 -2.729 1.399
37 O1S O O1S N N N 0 3.434 -1.876 2.535
38 O2S O O2S N N N 0 3.627 -4.111 2.019
39 O3S O O3S N N N 0 2.348 -2.894 0.543
40 HN3 H HN3 N N N 0 -5.734 -3.544 0.341
41 H5 H H5 N N N 0 -8.351 -2.381 -2.691
42 H6 H H6 N N N 0 -7.579 -0.085 -2.401
43 H1D H H1* N N N 0 -6.22 1.438 -1.408
44 H2D H H2* N N N 0 -5.899 0.482 1.492
45 HO2' H *HO2 N N N 0 -7.485 2.109 1.776
46 H3D H H3* N N N 0 -4.558 2.361 1.947
47 H4D H H4* N N N 0 -3.833 2.869 -0.833
48 HO3' H *HO3 N N N 0 -6.259 3.806 1.341
49 H5'1 H 1H5* N N N 0 -2.611 0.973 1.226
50 H5'2 H 2H5* N N N 0 -2.31 2.727 1.173
51 HOA2 H 2HOA N N N 0 -0.39 -0.648 0.612
52 HOB2 H 2HOB N N N 0 2.629 3.559 -0.295
53 H1' H H1' N N N 0 4.691 1.91 0.809
54 H2' H H2' N N N 0 6.936 1.465 -0.174
55 H3' H H3' N N N 0 5.361 0.348 -2.538
56 H4' H H4' N N N 0 7.135 -1.105 -0.521
57 H5' H H5' N N N 0 4.1 -1.067 -0.847
58 H6'1 H 1H6' N N N 0 5.08 -3.311 -0.294
59 H6'2 H 2H6' N N N 0 5.858 -2.582 1.132
60 HO2A H 'HO2 N N N 0 5.757 3.348 -0.748
61 HO3A H 'HO3 N N N 0 7.36 1.377 -2.993
62 HO4' H 'HO4 N N N 0 7.023 -1.967 -2.644
63 HXT H HXT N N N 0 2.829 -4.276 2.539