data_USQ
#
_chem_comp.id USQ
_chem_comp.name "SULFOQUINOVOSE-URIDINE-C1,5'-DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H24 N2 O19 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-02-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 630.366
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code USQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1I2B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
USQ N1 N1 N 0 1 N N N N N N 72.030 103.041 25.088 -6.220 -0.597 -0.847 N1 USQ 1
USQ C2 C2 C 0 1 N N N N N N 72.203 104.417 24.812 -5.703 -1.576 -0.084 C2 USQ 2
USQ N3 N3 N 0 1 N N N N N N 71.661 105.262 25.784 -6.115 -2.850 -0.220 N3 USQ 3
USQ C4 C4 C 0 1 N N N N N N 70.989 104.886 26.954 -7.051 -3.167 -1.137 C4 USQ 4
USQ C5 C5 C 0 1 N N N N N N 70.843 103.449 27.162 -7.600 -2.147 -1.951 C5 USQ 5
USQ C6 C6 C 0 1 N N N N N N 71.361 102.618 26.225 -7.172 -0.876 -1.790 C6 USQ 6
USQ O2 O2 O 0 1 N N N N N N 72.778 104.884 23.821 -4.858 -1.305 0.748 O2 USQ 7
USQ O4 O4 O 0 1 N N N N N N 70.566 105.720 27.743 -7.421 -4.320 -1.265 O4 USQ 8
USQ C1D C1* C 0 1 N N R N N N 72.558 102.052 24.119 -5.755 0.782 -0.672 C1D USQ 9
USQ C2D C2* C 0 1 N N R N N N 73.536 101.022 24.694 -6.046 1.281 0.766 C2D USQ 10
USQ O2D O2* O 0 1 N N N N N N 74.912 101.395 24.771 -7.367 1.818 0.862 O2D USQ 11
USQ C3D C3* C 0 1 N N S N N N 73.275 99.873 23.726 -4.982 2.396 0.944 C3D USQ 12
USQ C4D C4* C 0 1 N N R N N N 71.806 99.924 23.334 -3.908 2.059 -0.108 C4D USQ 13
USQ O4D O4* O 0 1 N N N N N N 71.443 101.302 23.577 -4.316 0.849 -0.768 O4D USQ 14
USQ O3D O3* O 0 1 N N N N N N 74.106 100.046 22.579 -5.556 3.680 0.690 O3D USQ 15
USQ C5D C5* C 0 1 N N N N N N 70.884 99.020 24.166 -2.557 1.848 0.577 C5D USQ 16
USQ O5D O5* O 0 1 N N N N N N 71.199 99.194 25.549 -1.547 1.644 -0.413 O5D USQ 17
USQ PA PA P 0 1 N N R N N N 70.198 98.906 26.738 -0.159 1.430 0.375 PA USQ 18
USQ O1A O1A O 0 1 N N N N N N 70.865 99.293 27.993 0.077 2.577 1.280 O1A USQ 19
USQ O2A O2A O 0 1 N N N N N N 68.843 99.384 26.385 -0.236 0.073 1.238 O2A USQ 20
USQ O3A O3A O 0 1 N N N N N N 70.157 97.314 26.692 1.049 1.324 -0.685 O3A USQ 21
USQ PB PB P 0 1 N N R N N N 71.204 96.111 26.911 2.415 1.513 0.147 PB USQ 22
USQ O1B O1B O 0 1 N N N N N N 72.253 96.554 27.844 2.357 0.699 1.381 O1B USQ 23
USQ O2B O2B O 0 1 N N N N N N 71.591 95.509 25.625 2.596 3.065 0.535 O2B USQ 24
USQ O3B O3B O 0 1 N N N N N N 70.335 95.127 27.844 3.661 1.036 -0.754 O3B USQ 25
USQ "C1'" "C1'" C 0 1 N N R N N N 68.956 94.921 27.836 4.823 1.115 0.074 "C1'" USQ 26
USQ "C2'" "C2'" C 0 1 N N R N N N 68.563 93.983 28.971 6.043 1.427 -0.797 "C2'" USQ 27
USQ "C3'" "C3'" C 0 1 N N S N N N 69.265 92.633 28.765 6.202 0.320 -1.846 "C3'" USQ 28
USQ "C4'" "C4'" C 0 1 N N S N N N 68.829 92.058 27.415 6.235 -1.036 -1.131 "C4'" USQ 29
USQ "C5'" "C5'" C 0 1 N N S N N N 69.212 93.068 26.318 4.999 -1.159 -0.237 "C5'" USQ 30
USQ "C6'" "C6'" C 0 1 N N N N N N 68.586 92.599 25.021 5.006 -2.523 0.456 "C6'" USQ 31
USQ "O2'" "O2'" O 0 1 N N N N N N 68.973 94.561 30.201 5.858 2.686 -1.446 "O2'" USQ 32
USQ "O3'" "O3'" O 0 1 N N N N N N 68.896 91.737 29.809 7.422 0.513 -2.565 "O3'" USQ 33
USQ "O4'" "O4'" O 0 1 N N N N N N 69.483 90.808 27.178 6.233 -2.087 -2.100 "O4'" USQ 34
USQ "O5'" "O5'" O 0 1 N N N N N N 68.573 94.343 26.589 5.011 -0.128 0.748 "O5'" USQ 35
USQ S S S 0 1 N N N N N N 69.954 92.172 23.922 3.470 -2.729 1.399 S USQ 36
USQ O1S O1S O 0 1 N N N N N N 71.143 92.964 24.080 3.434 -1.876 2.535 O1S USQ 37
USQ O2S O2S O 0 1 N N N N N N 70.146 90.760 24.265 3.627 -4.111 2.019 O2S USQ 38
USQ O3S O3S O 0 1 N N N N N N 69.414 92.384 22.602 2.348 -2.894 0.543 O3S USQ 39
USQ HN3 HN3 H 0 1 N N N N N N 71.764 106.244 25.627 -5.734 -3.544 0.341 HN3 USQ 40
USQ H5 H5 H 0 1 N N N N N N 70.339 103.060 28.034 -8.351 -2.381 -2.691 H5 USQ 41
USQ H6 H6 H 0 1 N N N N N N 71.244 101.555 26.375 -7.579 -0.085 -2.401 H6 USQ 42
USQ H1D H1* H 0 1 N N N N N N 73.111 102.645 23.376 -6.220 1.438 -1.408 H1D USQ 43
USQ H2D H2* H 0 1 N N N N N N 73.364 100.821 25.762 -5.899 0.482 1.492 H2D USQ 44
USQ "HO2'" *HO2 H 0 0 N N N N N N 75.268 101.478 23.894 -7.485 2.109 1.776 "HO2'" USQ 45
USQ H3D H3* H 0 1 N N N N N N 73.502 98.899 24.184 -4.558 2.361 1.947 H3D USQ 46
USQ H4D H4* H 0 1 N N N N N N 71.684 99.570 22.300 -3.833 2.869 -0.833 H4D USQ 47
USQ "HO3'" *HO3 H 0 0 N N N N N N 73.565 100.084 21.799 -6.259 3.806 1.341 "HO3'" USQ 48
USQ "H5'1" 1H5* H 0 0 N N N N N N 71.031 97.969 23.878 -2.611 0.973 1.226 "H5'1" USQ 49
USQ "H5'2" 2H5* H 0 0 N N N N N N 69.834 99.295 23.987 -2.310 2.727 1.173 "H5'2" USQ 50
USQ HOA2 2HOA H 0 0 N N N N N N 68.327 99.486 27.176 -0.390 -0.648 0.612 HOA2 USQ 51
USQ HOB2 2HOB H 0 0 N N N N N N 71.674 96.190 24.968 2.629 3.559 -0.295 HOB2 USQ 52
USQ "H1'" "H1'" H 0 1 N N N N N N 68.445 95.885 27.972 4.691 1.910 0.809 "H1'" USQ 53
USQ "H2'" "H2'" H 0 1 N N N N N N 67.474 93.827 28.984 6.936 1.465 -0.174 "H2'" USQ 54
USQ "H3'" "H3'" H 0 1 N N N N N N 70.356 92.770 28.781 5.361 0.348 -2.538 "H3'" USQ 55
USQ "H4'" "H4'" H 0 1 N N N N N N 67.743 91.885 27.411 7.135 -1.105 -0.521 "H4'" USQ 56
USQ "H5'" "H5'" H 0 1 N N N N N N 70.308 93.155 26.275 4.100 -1.067 -0.847 "H5'" USQ 57
USQ "H6'1" "1H6'" H 0 0 N N N N N N 67.951 93.381 24.580 5.080 -3.311 -0.294 "H6'1" USQ 58
USQ "H6'2" "2H6'" H 0 0 N N N N N N 67.945 91.723 25.197 5.858 -2.582 1.132 "H6'2" USQ 59
USQ HO2A "'HO2" H 0 0 N N N N N N 69.065 93.880 30.857 5.757 3.348 -0.748 HO2A USQ 60
USQ HO3A "'HO3" H 0 0 N N N N N N 68.814 90.858 29.458 7.360 1.377 -2.993 HO3A USQ 61
USQ "HO4'" "'HO4" H 0 0 N N N N N N 69.628 90.698 26.246 7.023 -1.967 -2.644 "HO4'" USQ 62
USQ HXT HXT H 0 1 N N N N N N 70.188 90.243 23.469 2.829 -4.276 2.539 HXT USQ 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
USQ N1 C2 SING N N 1
USQ N1 C6 SING N N 2
USQ N1 C1D SING N N 3
USQ C2 N3 SING N N 4
USQ C2 O2 DOUB N N 5
USQ N3 C4 SING N N 6
USQ N3 HN3 SING N N 7
USQ C4 C5 SING N N 8
USQ C4 O4 DOUB N N 9
USQ C5 C6 DOUB N N 10
USQ C5 H5 SING N N 11
USQ C6 H6 SING N N 12
USQ C1D C2D SING N N 13
USQ C1D O4D SING N N 14
USQ C1D H1D SING N N 15
USQ C2D O2D SING N N 16
USQ C2D C3D SING N N 17
USQ C2D H2D SING N N 18
USQ O2D "HO2'" SING N N 19
USQ C3D C4D SING N N 20
USQ C3D O3D SING N N 21
USQ C3D H3D SING N N 22
USQ C4D O4D SING N N 23
USQ C4D C5D SING N N 24
USQ C4D H4D SING N N 25
USQ O3D "HO3'" SING N N 26
USQ C5D O5D SING N N 27
USQ C5D "H5'1" SING N N 28
USQ C5D "H5'2" SING N N 29
USQ O5D PA SING N N 30
USQ PA O1A DOUB N N 31
USQ PA O2A SING N N 32
USQ PA O3A SING N N 33
USQ O2A HOA2 SING N N 34
USQ O3A PB SING N N 35
USQ PB O1B DOUB N N 36
USQ PB O2B SING N N 37
USQ PB O3B SING N N 38
USQ O2B HOB2 SING N N 39
USQ O3B "C1'" SING N N 40
USQ "C1'" "C2'" SING N N 41
USQ "C1'" "O5'" SING N N 42
USQ "C1'" "H1'" SING N N 43
USQ "C2'" "C3'" SING N N 44
USQ "C2'" "O2'" SING N N 45
USQ "C2'" "H2'" SING N N 46
USQ "C3'" "C4'" SING N N 47
USQ "C3'" "O3'" SING N N 48
USQ "C3'" "H3'" SING N N 49
USQ "C4'" "C5'" SING N N 50
USQ "C4'" "O4'" SING N N 51
USQ "C4'" "H4'" SING N N 52
USQ "C5'" "C6'" SING N N 53
USQ "C5'" "O5'" SING N N 54
USQ "C5'" "H5'" SING N N 55
USQ "C6'" S SING N N 56
USQ "C6'" "H6'1" SING N N 57
USQ "C6'" "H6'2" SING N N 58
USQ "O2'" HO2A SING N N 59
USQ "O3'" HO3A SING N N 60
USQ "O4'" "HO4'" SING N N 61
USQ S O1S DOUB N N 62
USQ S O2S SING N N 63
USQ S O3S DOUB N N 64
USQ O2S HXT SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
USQ SMILES ACDLabs 10.04 O=P(OC1OC(C(O)C(O)C1O)CS(=O)(=O)O)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O
USQ SMILES_CANONICAL CACTVS 3.341 O[C@H]1[C@H](O)[C@@H](C[S](O)(=O)=O)O[C@H](O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1O
USQ SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](C[S](O)(=O)=O)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1O
USQ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CS(=O)(=O)O)O)O)O)O)O
USQ SMILES "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CS(=O)(=O)O)O)O)O)O)O
USQ InChI InChI 1.03 InChI=1S/C15H24N2O19P2S/c18-7-1-2-17(15(24)16-7)13-11(22)8(19)5(33-13)3-32-37(25,26)36-38(27,28)35-14-12(23)10(21)9(20)6(34-14)4-39(29,30)31/h1-2,5-6,8-14,19-23H,3-4H2,(H,25,26)(H,27,28)(H,16,18,24)(H,29,30,31)/t5-,6-,8-,9-,10+,11-,12-,13-,14-/m1/s1
USQ InChIKey InChI 1.03 FQANCGQCBCUSMI-JZMIEXBBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
USQ "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,3S,4S,5R,6R)-6-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl]methanesulfonic acid (non-preferred name)"
USQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxan-2-yl]methanesulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
USQ 'Create component' 2001-02-13 RCSB
USQ 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id USQ
_pdbe_chem_comp_drugbank_details.drugbank_id DB02554
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name UDP-6-sulfoquinovose
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id USQ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02554
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine nucleotide sugars'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine nucleotide sugars. These are pyrimidine nucleotides bound to a saccharide derivative through the terminal phosphate group.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
USQ N1 N 15.827 5.389 1
USQ C2 C 17.319 5.546 2
USQ N3 N 17.929 6.916 3
USQ C4 C 17.048 8.130 4
USQ C5 C 15.556 7.973 5
USQ C6 C 14.946 6.603 6
USQ O2 O 18.201 4.332 7
USQ O4 O 17.658 9.500 8
USQ C1D C 15.217 4.019 9
USQ C2D C 15.967 2.720 10
USQ O2D O 17.459 2.563 11
USQ C3D C 14.963 1.605 12
USQ C4D C 13.593 2.215 13
USQ O4D O 13.750 3.707 14
USQ O3D O 15.275 0.138 15
USQ C5D C 12.294 1.465 16
USQ O5D O 12.294 -0.035 17
USQ PA P 10.995 -0.785 18
USQ O1A O 10.245 0.514 19
USQ O2A O 11.745 -2.084 20
USQ O3A O 9.696 -1.535 21
USQ PB P 9.696 -3.035 22
USQ O1B O 11.196 -3.035 23
USQ O2B O 8.196 -3.035 24
USQ O3B O 9.696 -4.535 25
USQ "C1'" C 8.397 -5.285 26
USQ "C2'" C 8.397 -6.785 27
USQ "C3'" C 7.098 -7.535 28
USQ "C4'" C 5.799 -6.785 29
USQ "C5'" C 5.799 -5.285 30
USQ "C6'" C 4.500 -4.535 31
USQ "O2'" O 9.696 -7.535 32
USQ "O3'" O 7.098 -9.035 33
USQ "O4'" O 4.500 -7.535 34
USQ "O5'" O 7.098 -4.535 35
USQ S S 4.500 -3.035 36
USQ O1S O 4.500 -1.535 37
USQ O2S O 3.000 -3.035 38
USQ O3S O 6.000 -3.035 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
USQ N1 C2 SINGLE NONE 1
USQ N1 C6 SINGLE NONE 2
USQ C1D N1 SINGLE BEGINWEDGE 3
USQ C2 N3 SINGLE NONE 4
USQ C2 O2 DOUBLE NONE 5
USQ N3 C4 SINGLE NONE 6
USQ C4 C5 SINGLE NONE 7
USQ C4 O4 DOUBLE NONE 8
USQ C5 C6 DOUBLE NONE 9
USQ C1D C2D SINGLE NONE 10
USQ C1D O4D SINGLE NONE 11
USQ C2D O2D SINGLE BEGINDASH 12
USQ C2D C3D SINGLE NONE 13
USQ C3D C4D SINGLE NONE 14
USQ C3D O3D SINGLE BEGINDASH 15
USQ C4D O4D SINGLE NONE 16
USQ C4D C5D SINGLE BEGINWEDGE 17
USQ C5D O5D SINGLE NONE 18
USQ O5D PA SINGLE NONE 19
USQ PA O1A DOUBLE NONE 20
USQ PA O2A SINGLE BEGINDASH 21
USQ PA O3A SINGLE NONE 22
USQ O3A PB SINGLE NONE 23
USQ PB O1B DOUBLE NONE 24
USQ PB O2B SINGLE BEGINDASH 25
USQ PB O3B SINGLE NONE 26
USQ "C1'" O3B SINGLE BEGINDASH 27
USQ "C1'" "C2'" SINGLE NONE 28
USQ "C1'" "O5'" SINGLE NONE 29
USQ "C2'" "C3'" SINGLE NONE 30
USQ "C2'" "O2'" SINGLE BEGINDASH 31
USQ "C3'" "C4'" SINGLE NONE 32
USQ "C3'" "O3'" SINGLE BEGINWEDGE 33
USQ "C4'" "C5'" SINGLE NONE 34
USQ "C4'" "O4'" SINGLE BEGINDASH 35
USQ "C5'" "C6'" SINGLE BEGINWEDGE 36
USQ "C5'" "O5'" SINGLE NONE 37
USQ "C6'" S SINGLE NONE 38
USQ S O1S DOUBLE NONE 39
USQ S O2S SINGLE NONE 40
USQ S O3S DOUBLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
USQ MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CCCCO3)O2)c(=O)[nH]1' InChI=1S/C14H22N2O9P2/c17-11-6-7-16(14(18)15-11)12-5-4-10(23-12)9-22-26(19)25-27(20)24-13-3-1-2-8-21-13/h6-7,10,12-13,26-27H,1-5,8-9H2,(H,15,17,18)/t10-,12+,13+/m0/s1 AKKVBKIXAFLMCT-CYZMBNFOSA-N
USQ phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
USQ pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
USQ pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
USQ ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
USQ N1 S1 1
USQ C2 S1 1
USQ N3 S1 1
USQ C4 S1 1
USQ C5 S1 1
USQ C6 S1 1
USQ O2 S1 1
USQ O4 S1 1
USQ C1D S1 1
USQ C2D S1 1
USQ C3D S1 1
USQ C4D S1 1
USQ O4D S1 1
USQ C5D S1 1
USQ O5D S1 1
USQ PA S1 1
USQ O1A S1 1
USQ O3A S1 1
USQ PB S1 1
USQ O1B S1 1
USQ O3B S1 1
USQ "C1'" S1 1
USQ "C2'" S1 1
USQ "C3'" S1 1
USQ "C4'" S1 1
USQ "C5'" S1 1
USQ "O5'" S1 1
USQ O5D F1 1
USQ PA F1 1
USQ O1A F1 1
USQ O2A F1 1
USQ O3A F1 1
USQ O3A F1 2
USQ PB F1 2
USQ O1B F1 2
USQ O2B F1 2
USQ O3B F1 2
USQ "C4'" F2 1
USQ "C5'" F2 1
USQ "O5'" F2 1
USQ "C1'" F2 1
USQ "C2'" F2 1
USQ "C3'" F2 1
USQ O3B F2 1
USQ C5 F3 1
USQ C4 F3 1
USQ N3 F3 1
USQ C2 F3 1
USQ N1 F3 1
USQ C6 F3 1
USQ C2D F4 1
USQ C3D F4 1
USQ C4D F4 1
USQ O4D F4 1
USQ C1D F4 1
USQ C5D F4 1
USQ O5D F4 1
USQ O3D F4 1
USQ O2D F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id USQ
_pdbe_chem_comp_rdkit_properties.exactmw 630.017
_pdbe_chem_comp_rdkit_properties.amw 630.367
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 21
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 20
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 24
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.733
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 250.732
_pdbe_chem_comp_rdkit_properties.tpsa 331.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.098
_pdbe_chem_comp_rdkit_properties.CrippenMR 118.332
_pdbe_chem_comp_rdkit_properties.chi0v 20.059
_pdbe_chem_comp_rdkit_properties.chi1v 13.016
_pdbe_chem_comp_rdkit_properties.chi2v 6.273
_pdbe_chem_comp_rdkit_properties.chi3v 6.273
_pdbe_chem_comp_rdkit_properties.chi4v 4.264
_pdbe_chem_comp_rdkit_properties.chi0n 41.454
_pdbe_chem_comp_rdkit_properties.chi1n 19.900
_pdbe_chem_comp_rdkit_properties.chi2n 3.533
_pdbe_chem_comp_rdkit_properties.chi3n 3.533
_pdbe_chem_comp_rdkit_properties.chi4n 2.138
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.430
_pdbe_chem_comp_rdkit_properties.kappa1 12.433
_pdbe_chem_comp_rdkit_properties.kappa2 11.818
_pdbe_chem_comp_rdkit_properties.kappa3 8.075
_pdbe_chem_comp_rdkit_properties.Phi 3.768
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
USQ UniChem DrugBank DB02554
USQ UniChem 'KEGG LIGAND' C11521
USQ UniChem ChEBI 15855
USQ UniChem ZINC ZINC000008419260
USQ UniChem BRENDA 103714
USQ UniChem BRENDA 79333
USQ UniChem 'Probes And Drugs' PD059928
USQ UniChem Nikkaji J696.634I
USQ UniChem SureChEMBL SCHEMBL1332801
USQ UniChem PubChem 443244
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
USQ N1 -7.436 -0.315 0.421 ETKDGv3 1
USQ C2 -6.950 0.169 1.693 ETKDGv3 2
USQ N3 -7.883 0.620 2.677 ETKDGv3 3
USQ C4 -9.278 0.612 2.375 ETKDGv3 4
USQ C5 -9.733 0.147 1.059 ETKDGv3 5
USQ C6 -8.853 -0.281 0.149 ETKDGv3 6
USQ O2 -5.716 0.203 1.945 ETKDGv3 7
USQ O4 -10.113 1.005 3.231 ETKDGv3 8
USQ C1D -6.520 -0.760 -0.642 ETKDGv3 9
USQ C2D -5.869 0.423 -1.340 ETKDGv3 10
USQ O2D -6.672 0.917 -2.381 ETKDGv3 11
USQ C3D -4.583 -0.177 -1.853 ETKDGv3 12
USQ C4D -4.332 -1.340 -0.878 ETKDGv3 13
USQ O4D -5.499 -1.575 -0.114 ETKDGv3 14
USQ O3D -4.744 -0.686 -3.155 ETKDGv3 15
USQ C5D -3.163 -1.051 0.070 ETKDGv3 16
USQ O5D -1.965 -0.988 -0.669 ETKDGv3 17
USQ PA -0.693 -0.584 0.394 ETKDGv3 18
USQ O1A -0.924 0.807 0.941 ETKDGv3 19
USQ O2A -0.644 -1.698 1.670 ETKDGv3 20
USQ O3A 0.761 -0.623 -0.494 ETKDGv3 21
USQ PB 2.051 -0.405 0.596 ETKDGv3 22
USQ O1B 2.155 -1.600 1.518 ETKDGv3 23
USQ O2B 1.833 1.003 1.514 ETKDGv3 24
USQ O3B 3.494 -0.285 -0.312 ETKDGv3 25
USQ "C1'" 4.575 0.101 0.521 ETKDGv3 26
USQ "C2'" 4.900 1.618 0.347 ETKDGv3 27
USQ "C3'" 6.420 1.849 0.424 ETKDGv3 28
USQ "C4'" 7.153 0.995 -0.639 ETKDGv3 29
USQ "C5'" 6.398 -0.337 -0.900 ETKDGv3 30
USQ "C6'" 7.348 -1.460 -1.364 ETKDGv3 31
USQ "O2'" 4.431 2.098 -0.890 ETKDGv3 32
USQ "O3'" 6.891 1.500 1.703 ETKDGv3 33
USQ "O4'" 7.247 1.707 -1.847 ETKDGv3 34
USQ "O5'" 5.686 -0.747 0.255 ETKDGv3 35
USQ S 8.202 -2.294 -0.023 ETKDGv3 36
USQ O1S 8.845 -1.302 0.904 ETKDGv3 37
USQ O2S 9.387 -3.288 -0.681 ETKDGv3 38
USQ O3S 7.223 -3.136 0.747 ETKDGv3 39
USQ HN3 -7.546 0.959 3.606 ETKDGv3 40
USQ H5 -10.790 0.155 0.822 ETKDGv3 41
USQ H6 -9.225 -0.609 -0.814 ETKDGv3 42
USQ H1D -7.076 -1.370 -1.392 ETKDGv3 43
USQ H2D -5.627 1.234 -0.613 ETKDGv3 44
USQ "HO2'" -7.399 1.439 -1.951 ETKDGv3 45
USQ H3D -3.761 0.579 -1.832 ETKDGv3 46
USQ H4D -4.093 -2.270 -1.442 ETKDGv3 47
USQ "HO3'" -4.585 0.069 -3.780 ETKDGv3 48
USQ "H5'1" -3.112 -1.877 0.815 ETKDGv3 49
USQ "H5'2" -3.363 -0.091 0.600 ETKDGv3 50
USQ HOA2 -0.551 -2.581 1.230 ETKDGv3 51
USQ HOB2 1.714 1.724 0.846 ETKDGv3 52
USQ "H1'" 4.363 -0.051 1.606 ETKDGv3 53
USQ "H2'" 4.418 2.195 1.172 ETKDGv3 54
USQ "H3'" 6.637 2.928 0.240 ETKDGv3 55
USQ "H4'" 8.181 0.784 -0.269 ETKDGv3 56
USQ "H5'" 5.681 -0.179 -1.742 ETKDGv3 57
USQ "H6'1" 6.756 -2.227 -1.908 ETKDGv3 58
USQ "H6'2" 8.097 -1.057 -2.078 ETKDGv3 59
USQ HO2A 3.473 2.326 -0.771 ETKDGv3 60
USQ HO3A 6.614 2.227 2.320 ETKDGv3 61
USQ "HO4'" 7.967 2.381 -1.732 ETKDGv3 62
USQ HXT 9.797 -3.746 0.096 ETKDGv3 63
#