Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : URK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 6.033 -3.721 0.262
2 C2 C C2 N N N 0 5.419 -2.643 -0.22
3 C3 C C3 N N N 0 4.098 -2.258 0.296
4 O1 O O1 N N N 0 3.476 -1.166 -0.192
5 C4 C C4 S N N 0 2.173 -0.846 0.365
6 C5 C C5 N Y N 0 1.959 0.645 0.315
7 C6 C C6 N Y N 0 1.349 1.291 1.375
8 C7 C C7 N Y N 0 1.152 2.658 1.329
9 C8 C C8 N Y N 0 1.564 3.38 0.224
10 N1 N N1 N N N 1 1.352 4.844 0.175
11 O2 O O2 N N N 0 0.815 5.413 1.108
12 O3 O O3 N N N -1 1.715 5.479 -0.799
13 C9 C C9 N Y N 0 2.174 2.734 -0.835
14 C10 C C10 N Y N 0 2.376 1.367 -0.787
15 C11 C C11 N N N 0 1.101 -1.535 -0.439
16 N2 N N2 N N N 0 -0.186 -1.464 -0.045
17 C12 C C12 N N N 0 -1.229 -2.134 -0.826
18 C13 C C13 N Y N 0 -2.57 -1.902 -0.177
19 C14 C C14 N Y N 0 -3.238 -0.705 -0.376
20 O4 O O4 N N N 0 -2.686 0.262 -1.157
21 C15 C C15 N N N 0 -3.002 0.231 -2.55
22 C16 C C16 N Y N 0 -4.476 -0.495 0.224
23 O5 O O5 N N N 0 -5.136 0.679 0.031
24 C17 C C17 N N N 0 -6.402 0.825 0.678
25 C18 C C18 N Y N 0 -5.034 -1.483 1.018
26 C19 C C19 N Y N 0 -4.362 -2.676 1.212
27 C20 C C20 N Y N 0 -3.135 -2.887 0.612
28 O6 O O6 N N N 0 1.395 -2.153 -1.44
29 O7 O O7 N N N 0 3.566 -2.924 1.163
30 H1 H H1 N N N 0 5.561 -4.312 1.032
31 H2 H H2 N N N 0 7.002 -4.006 -0.121
32 H4 H H4 N N N 0 5.891 -2.051 -0.99
33 H6 H H6 N N N 0 2.127 -1.186 1.4
34 H7 H H7 N N N 0 1.027 0.727 2.238
35 H8 H H8 N N N 0 0.675 3.163 2.156
36 H9 H H9 N N N 0 2.496 3.297 -1.698
37 H10 H H10 N N N 0 2.853 0.862 -1.614
38 H11 H H11 N N N 0 -0.422 -0.97 0.756
39 H12 H H12 N N N 0 -1.241 -1.73 -1.839
40 H13 H H13 N N N 0 -1.024 -3.204 -0.864
41 H14 H H14 N N N 0 -2.498 1.054 -3.056
42 H15 H H15 N N N 0 -2.669 -0.715 -2.977
43 H16 H H16 N N N 0 -4.08 0.329 -2.681
44 H17 H H17 N N N 0 -6.819 1.804 0.442
45 H18 H H18 N N N 0 -7.08 0.046 0.329
46 H19 H H19 N N N 0 -6.271 0.736 1.757
47 H20 H H20 N N N 0 -5.995 -1.322 1.485
48 H21 H H21 N N N 0 -4.799 -3.445 1.831
49 H22 H H22 N N N 0 -2.613 -3.819 0.766