Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1* R N N 0 -0.978 0.96 -4.149
2 C2 C C2 N N N 0 0.513 -0.842 -4.809
3 C2' C C2* N N N 0 -2.258 0.149 -4.428
4 C3' C C3* S N N 0 -2.66 -0.413 -3.043
5 C4 C C4 N N N 0 2.171 -0.573 -6.432
6 C4' C C4* R N N 0 -1.923 0.548 -2.076
7 C5 C C5 N N N 0 1.779 0.777 -6.593
8 C5' C C5* N N N 0 -1.675 -0.129 -0.727
9 C5M C C5M N N N 0 2.487 1.664 -7.584
10 C6 C C6 N N N 0 0.76 1.258 -5.85
11 H1' H H1* N N N 0 -1.146 2.011 -4.387
12 H2'1 H 1H2* N N N 0 -3.042 0.796 -4.819
13 H2'2 H 2H2* N N N 0 -2.05 -0.663 -5.124
14 H3' H H3* N N N 0 -2.304 -1.436 -2.92
15 H4' H H4* N N N 0 -2.492 1.468 -1.943
16 H5'1 H 1H5* N N N 0 -2.629 -0.414 -0.283
17 H5'2 H 2H5* N N N 0 -1.063 -1.019 -0.874
18 H6 H H6 N N N 0 0.445 2.285 -5.962
19 HM51 H 1HM5 N N N 0 3.274 1.098 -8.082
20 HM52 H 2HM5 N N N 0 1.773 2.022 -8.326
21 HM53 H 3HM5 N N N 0 2.926 2.514 -7.062
22 HN3 H HN3 N N N 0 1.79 -2.273 -5.418
23 HO3' H *HO3 N N N 0 -4.476 -0.888 -3.543
24 HOA2 H 2HOA N N N 0 -2.693 0.393 2.292
25 HOB2 H 2HOB N N N 0 1.913 -0.884 3.293
26 HOG2 H 2HOG N N N 0 1.94 0.441 8.261
27 HOG3 H 3HOG N N N 0 -0.827 0.546 7.076
28 N1 N N1 N N N 0 0.128 0.438 -4.955
29 N3 N N3 N N N 0 1.526 -1.347 -5.536
30 O1A O O1A N N N 0 0.046 -1.209 1.299
31 O1B O O1B N N N 0 -1.137 -0.257 4.463
32 O1G O O1G N N N 0 1.895 -1.058 6.038
33 O2 O O2 N N N 0 -0.062 -1.553 -4.008
34 O2A O O2A N N N 0 -2.194 -0.422 2.153
35 O2B O O2B N N N 0 1.059 -1.184 3.636
36 O2G O O2G N N N 0 1.867 1.011 7.483
37 O3' O O3* N N N 0 -4.074 -0.341 -2.854
38 O3A O O3A N N N 0 -0.0040 0.97 2.571
39 O3B O O3B N N N 0 0.95 1.048 5.019
40 O3G O O3G N N N 0 -0.348 -0.271 6.885
41 O4 O O4 N N N 0 3.088 -1.03 -7.091
42 O4' O O4* N N N 0 -0.674 0.818 -2.751
43 O5' O O5* N N N 0 -0.996 0.777 0.144
44 PA P PA S N N 0 -0.769 0.0020 1.536
45 PB P PB S N N 0 0.188 0.135 3.934
46 PG P PG N N N 0 1.108 0.155 6.349