Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SVR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 126


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O35 O O35 N N N 0 -15.164 2.506 -1.1
2 S31 S S31 N N N 0 -14.397 3.555 -0.523
3 O36 O O36 N N N 0 -14.03 4.73 -1.232
4 O34 O O34 N N N 0 -15.161 4.017 0.709
5 C22 C C22 N Y N 0 -12.896 2.822 0.038
6 C18 C C18 N Y N 0 -12.861 1.458 0.32
7 C11 C C11 N Y N 0 -11.717 0.862 0.756
8 S17 S S17 N N N 0 -11.697 -0.864 1.107
9 O23 O O23 N N N 0 -10.647 -1.42 0.327
10 O24 O O24 N N N 0 -11.763 -0.987 2.521
11 O25 O O25 N N N 0 -12.992 -1.45 0.564
12 C16 C C16 N Y N 0 -11.786 3.596 0.184
13 C10 C C10 N Y N 0 -10.587 3.015 0.631
14 C15 C C15 N Y N 0 -9.421 3.784 0.792
15 S21 S S21 N N N 0 -9.446 5.509 0.433
16 O28 O O28 N N N 0 -8.953 5.65 -0.892
17 O29 O O29 N N N 0 -10.72 5.986 0.844
18 O30 O O30 N N N 0 -8.424 6.173 1.345
19 C12 C C12 N Y N 0 -8.273 3.195 1.227
20 C7 C C7 N Y N 0 -8.229 1.834 1.517
21 C6 C C6 N Y N 0 -10.554 1.63 0.924
22 C3 C C3 N Y N 0 -9.349 1.046 1.371
23 N1 N N1 N N N 0 -9.294 -0.317 1.663
24 C2 C C2 N N N 0 -8.315 -1.08 1.137
25 O4 O O4 N N N 0 -7.443 -0.569 0.462
26 C5 C C5 N Y N 0 -8.303 -2.538 1.38
27 C8 C C8 N Y N 0 -7.366 -3.347 0.737
28 C9 C C9 N Y N 0 -9.224 -3.109 2.26
29 C14 C C14 N Y N 0 -9.21 -4.47 2.486
30 C20 C C20 N Y N 0 -8.285 -5.273 1.845
31 C27 C C27 N N N 0 -8.277 -6.759 2.097
32 C13 C C13 N Y N 0 -7.36 -4.713 0.971
33 N19 N N19 N N N 0 -6.424 -5.529 0.327
34 C26 C C26 N N N 0 -5.198 -5.049 0.038
35 O32 O O32 N N N 0 -4.876 -3.939 0.414
36 C33 C C33 N Y N 0 -4.246 -5.872 -0.738
37 C37 C C37 N Y N 0 -2.977 -5.378 -1.039
38 C38 C C38 N Y N 0 -4.612 -7.149 -1.167
39 C40 C C40 N Y N 0 -3.722 -7.916 -1.891
40 C42 C C42 N Y N 0 -2.466 -7.423 -2.194
41 C39 C C39 N Y N 0 -2.09 -6.155 -1.767
42 N41 N N41 N N N 0 -0.816 -5.663 -2.072
43 C43 C C43 N N N 0 -0.634 -4.344 -2.274
44 O45 O O45 N N N 0 -1.56 -3.571 -2.121
45 N44 N N44 N N N 0 0.576 -3.88 -2.647
46 C46 C C46 N Y N 0 0.787 -2.502 -2.776
47 C47 C C47 N Y N 0 2.033 -1.963 -2.496
48 C48 C C48 N Y N 0 -0.25 -1.676 -3.19
49 C50 C C50 N Y N 0 -0.046 -0.315 -3.32
50 C52 C C52 N Y N 0 1.189 0.233 -3.039
51 C49 C C49 N Y N 0 2.239 -0.59 -2.627
52 C51 C C51 N N N 0 3.565 -0.007 -2.33
53 O54 O O54 N N N 0 4.478 -0.725 -1.971
54 N53 N N53 N N N 0 3.761 1.32 -2.457
55 C55 C C55 N Y N 0 5.038 1.86 -2.266
56 C56 C C56 N Y N 0 5.894 1.3 -1.331
57 C57 C C57 N Y N 0 5.449 2.954 -3.017
58 C59 C C59 N N N 0 4.518 3.557 -4.037
59 C60 C C60 N Y N 0 6.709 3.491 -2.832
60 C62 C C62 N Y N 0 7.568 2.945 -1.9
61 C58 C C58 N Y N 0 7.166 1.842 -1.144
62 C61 C C61 N N N 0 8.085 1.25 -0.149
63 O64 O O64 N N N 0 7.765 0.243 0.451
64 N63 N N63 N N N 0 9.279 1.828 0.093
65 C65 C C65 N Y N 0 10.106 1.326 1.097
66 C67 C C67 N Y N 0 9.609 1.106 2.364
67 C70 C C70 N Y N 0 10.426 0.604 3.372
68 C71 C C71 N Y N 0 11.736 0.318 3.138
69 S75 S S75 N N N 0 12.746 -0.317 4.436
70 O80 O O80 N N N 0 12.516 -1.718 4.474
71 O81 O O81 N N N 0 14.034 0.255 4.258
72 O82 O O82 N N N 0 12.204 0.243 5.743
73 C66 C C66 N Y N 0 11.46 1.032 0.824
74 C68 C C68 N Y N 0 12.283 0.527 1.86
75 C72 C C72 N Y N 0 13.632 0.24 1.59
76 C69 C C69 N Y N 0 12.005 1.235 -0.453
77 S73 S S73 N N N 0 11.001 1.868 -1.755
78 O77 O O77 N N N 0 9.874 1.007 -1.848
79 O78 O O78 N N N 0 10.893 3.268 -1.533
80 O79 O O79 N N N 0 11.781 1.697 -3.05
81 C74 C C74 N Y N 0 13.315 0.94 -0.681
82 C76 C C76 N Y N 0 14.129 0.456 0.341
83 S83 S S83 N N N 0 15.821 0.095 0.006
84 O85 O O85 N N N 0 15.89 -1.352 -0.458
85 O86 O O86 N N N 0 16.188 0.893 -1.112
86 O84 O O84 N N N 0 16.498 0.149 1.255
87 H34 H H34 N N N 0 -16.009 4.438 0.512
88 H18 H H18 N N N 0 -13.755 0.865 0.192
89 H25 H H25 N N N 0 -13.083 -2.402 0.705
90 H16 H H16 N N N 0 -11.826 4.651 -0.044
91 H30 H H30 N N N 0 -8.356 7.131 1.228
92 H12 H H12 N N N 0 -7.382 3.793 1.348
93 H7 H H7 N N N 0 -7.305 1.391 1.859
94 HN1 H HN1 N N N 0 -9.96 -0.716 2.246
95 H8 H H8 N N N 0 -6.649 -2.91 0.058
96 H9 H H9 N N N 0 -9.948 -2.486 2.764
97 H14 H H14 N N N 0 -9.924 -4.91 3.167
98 H271 H H271 N N N 0 -8.932 -7.253 1.38
99 H272 H H272 N N N 0 -7.262 -7.14 1.985
100 H273 H H273 N N N 0 -8.63 -6.957 3.109
101 H19 H H19 N N N 0 -6.656 -6.44 0.09
102 H37 H H37 N N N 0 -2.687 -4.392 -0.706
103 H38 H H38 N N N 0 -5.592 -7.538 -0.932
104 H40 H H40 N N N 0 -4.007 -8.903 -2.221
105 H42 H H42 N N N 0 -1.773 -8.028 -2.76
106 H41 H H41 N N N 0 -0.064 -6.273 -2.137
107 H44 H H44 N N N 0 1.299 -4.5 -2.825
108 H47 H H47 N N N 0 2.842 -2.604 -2.177
109 H48 H H48 N N N 0 -1.219 -2.098 -3.412
110 H50 H H50 N N N 0 -0.856 0.323 -3.644
111 H52 H H52 N N N 0 1.345 1.296 -3.142
112 H53 H H53 N N N 0 3.018 1.901 -2.681
113 H56 H H56 N N N 0 5.578 0.447 -0.749
114 H591 H H591 N N N 0 3.919 4.336 -3.566
115 H592 H H592 N N N 0 5.101 3.99 -4.851
116 H593 H H593 N N N 0 3.861 2.783 -4.433
117 H60 H H60 N N N 0 7.023 4.342 -3.419
118 H62 H H62 N N N 0 8.551 3.367 -1.759
119 H63 H H63 N N N 0 9.562 2.594 -0.431
120 H67 H H67 N N N 0 8.573 1.326 2.576
121 H70 H H70 N N N 0 10.015 0.441 4.357
122 H82 H H82 N N N 0 12.691 -0.045 6.527
123 H72 H H72 N N N 0 14.271 -0.148 2.369
124 H79 H H79 N N N 0 11.315 2.016 -3.835
125 H74 H H74 N N N 0 13.733 1.097 -1.665
126 H85 H H85 N N N 0 16.784 -1.655 -0.67