data_SVR
#
_chem_comp.id SVR
_chem_comp.name
;8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFON
IC ACID
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C51 H40 N6 O23 S6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms SURAMIN
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-15
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 1297.280
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SVR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y4L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SVR O35 O35 O 0 1 N N N N N N 15.262 13.045 8.858 -15.164 2.506 -1.100 O35 SVR 1
SVR S31 S31 S 0 1 N N N N N N 14.681 11.897 8.108 -14.397 3.555 -0.523 S31 SVR 2
SVR O36 O36 O 0 1 N N N N N N 13.206 12.065 8.028 -14.030 4.730 -1.232 O36 SVR 3
SVR O34 O34 O 0 1 N N N N N N 15.287 11.762 6.753 -15.161 4.017 0.709 O34 SVR 4
SVR C22 C22 C 0 1 Y N N N N N 15.015 10.602 8.946 -12.896 2.822 0.038 C22 SVR 5
SVR C18 C18 C 0 1 Y N N N N N 14.286 9.447 8.755 -12.861 1.458 0.320 C18 SVR 6
SVR C11 C11 C 0 1 Y N N N N N 14.575 8.317 9.497 -11.717 0.862 0.756 C11 SVR 7
SVR S17 S17 S 0 1 N N N N N N 13.639 7.054 9.128 -11.697 -0.864 1.107 S17 SVR 8
SVR O23 O23 O 0 1 N N N N N N 14.431 5.970 8.502 -10.647 -1.420 0.327 O23 SVR 9
SVR O24 O24 O 0 1 N N N N N N 12.940 6.502 10.322 -11.763 -0.987 2.521 O24 SVR 10
SVR O25 O25 O 0 1 N N N N N N 12.634 7.531 8.146 -12.992 -1.450 0.564 O25 SVR 11
SVR C16 C16 C 0 1 Y N N N N N 16.042 10.677 9.865 -11.786 3.596 0.184 C16 SVR 12
SVR C10 C10 C 0 1 Y N N N N N 16.368 9.575 10.623 -10.587 3.015 0.631 C10 SVR 13
SVR C15 C15 C 0 1 Y N N N N N 17.420 9.713 11.552 -9.421 3.784 0.792 C15 SVR 14
SVR S21 S21 S 0 1 N N N N N N 18.281 11.083 11.767 -9.446 5.509 0.433 S21 SVR 15
SVR O28 O28 O 0 1 N N N N N N 18.885 11.471 10.473 -8.953 5.650 -0.892 O28 SVR 16
SVR O29 O29 O 0 1 N N N N N N 17.458 12.207 12.264 -10.720 5.986 0.844 O29 SVR 17
SVR O30 O30 O 0 1 N N N N N N 19.344 10.784 12.743 -8.424 6.173 1.345 O30 SVR 18
SVR C12 C12 C 0 1 Y N N N N N 17.735 8.598 12.318 -8.273 3.195 1.227 C12 SVR 19
SVR C7 C7 C 0 1 Y N N N N N 17.031 7.418 12.161 -8.229 1.834 1.517 C7 SVR 20
SVR C6 C6 C 0 1 Y N N N N N 15.632 8.375 10.449 -10.554 1.630 0.924 C6 SVR 21
SVR C3 C3 C 0 1 Y N N N N N 16.002 7.276 11.234 -9.349 1.046 1.371 C3 SVR 22
SVR N1 N1 N 0 1 N N N N N N 15.319 6.048 11.200 -9.294 -0.317 1.663 N1 SVR 23
SVR C2 C2 C 0 1 N N N N N N 15.837 4.832 11.106 -8.315 -1.080 1.137 C2 SVR 24
SVR O4 O4 O 0 1 N N N N N N 17.023 4.600 10.989 -7.443 -0.569 0.462 O4 SVR 25
SVR C5 C5 C 0 1 Y N N N N N 14.891 3.681 11.156 -8.303 -2.538 1.380 C5 SVR 26
SVR C8 C8 C 0 1 Y N N N N N 13.902 3.682 12.136 -7.366 -3.347 0.737 C8 SVR 27
SVR C9 C9 C 0 1 Y N N N N N 15.026 2.622 10.266 -9.224 -3.109 2.260 C9 SVR 28
SVR C14 C14 C 0 1 Y N N N N N 14.149 1.550 10.344 -9.210 -4.470 2.486 C14 SVR 29
SVR C20 C20 C 0 1 Y N N N N N 13.154 1.549 11.316 -8.285 -5.273 1.845 C20 SVR 30
SVR C27 C27 C 0 1 N N N N N N 12.204 0.393 11.399 -8.277 -6.759 2.097 C27 SVR 31
SVR C13 C13 C 0 1 Y N N N N N 13.027 2.606 12.206 -7.360 -4.713 0.971 C13 SVR 32
SVR N19 N19 N 0 1 N N N N N N 12.015 2.575 13.170 -6.424 -5.529 0.327 N19 SVR 33
SVR C26 C26 C 0 1 N N N N N N 10.772 2.923 12.844 -5.198 -5.049 0.038 C26 SVR 34
SVR O32 O32 O 0 1 N N N N N N 10.467 3.277 11.717 -4.876 -3.939 0.414 O32 SVR 35
SVR C33 C33 C 0 1 Y N N N N N 9.717 2.857 13.910 -4.246 -5.872 -0.738 C33 SVR 36
SVR C37 C37 C 0 1 Y N N N N N 8.370 2.948 13.573 -2.977 -5.378 -1.039 C37 SVR 37
SVR C38 C38 C 0 1 Y N N N N N 10.093 2.692 15.240 -4.612 -7.149 -1.167 C38 SVR 38
SVR C40 C40 C 0 1 Y N N N N N 9.120 2.624 16.231 -3.722 -7.916 -1.891 C40 SVR 39
SVR C42 C42 C 0 1 Y N N N N N 7.774 2.717 15.898 -2.466 -7.423 -2.194 C42 SVR 40
SVR C39 C39 C 0 1 Y N N N N N 7.400 2.873 14.569 -2.090 -6.155 -1.767 C39 SVR 41
SVR N41 N41 N 0 1 N N N N N N 6.038 2.977 14.269 -0.816 -5.663 -2.072 N41 SVR 42
SVR C43 C43 C 0 1 N N N N N N 5.595 3.542 13.147 -0.634 -4.344 -2.274 C43 SVR 43
SVR O45 O45 O 0 1 N N N N N N 6.355 3.992 12.302 -1.560 -3.571 -2.121 O45 SVR 44
SVR N44 N44 N 0 1 N N N N N N 4.277 3.590 12.976 0.576 -3.880 -2.647 N44 SVR 45
SVR C46 C46 C 0 1 Y N N N N N 3.750 4.186 11.830 0.787 -2.502 -2.776 C46 SVR 46
SVR C47 C47 C 0 1 Y N N N N N 3.825 3.578 10.583 2.033 -1.963 -2.496 C47 SVR 47
SVR C48 C48 C 0 1 Y N N N N N 3.157 5.435 11.974 -0.250 -1.676 -3.190 C48 SVR 48
SVR C50 C50 C 0 1 Y N N N N N 2.623 6.091 10.876 -0.046 -0.315 -3.320 C50 SVR 49
SVR C52 C52 C 0 1 Y N N N N N 2.689 5.482 9.634 1.189 0.233 -3.039 C52 SVR 50
SVR C49 C49 C 0 1 Y N N N N N 3.297 4.241 9.485 2.239 -0.590 -2.627 C49 SVR 51
SVR C51 C51 C 0 1 N N N N N N 3.303 3.665 8.108 3.565 -0.007 -2.330 C51 SVR 52
SVR O54 O54 O 0 1 N N N N N N 3.979 2.704 7.786 4.478 -0.725 -1.971 O54 SVR 53
SVR N53 N53 N 0 1 N N N N N N 2.490 4.331 7.315 3.761 1.320 -2.457 N53 SVR 54
SVR C55 C55 C 0 1 Y N N N N N 2.168 4.117 5.981 5.038 1.860 -2.266 C55 SVR 55
SVR C56 C56 C 0 1 Y N N N N N 2.722 3.148 5.150 5.894 1.300 -1.331 C56 SVR 56
SVR C57 C57 C 0 1 Y N N N N N 1.182 4.962 5.542 5.449 2.954 -3.017 C57 SVR 57
SVR C59 C59 C 0 1 N N N N N N 0.643 5.974 6.515 4.518 3.557 -4.037 C59 SVR 58
SVR C60 C60 C 0 1 Y N N N N N 0.711 4.889 4.247 6.709 3.491 -2.832 C60 SVR 59
SVR C62 C62 C 0 1 Y N N N N N 1.257 3.941 3.401 7.568 2.945 -1.900 C62 SVR 60
SVR C58 C58 C 0 1 Y N N N N N 2.271 3.097 3.833 7.166 1.842 -1.144 C58 SVR 61
SVR C61 C61 C 0 1 N N N N N N 2.730 2.079 2.844 8.085 1.250 -0.149 C61 SVR 62
SVR O64 O64 O 0 1 N N N N N N 2.965 2.359 1.679 7.765 0.243 0.451 O64 SVR 63
SVR N63 N63 N 0 1 N N N N N N 2.785 0.857 3.355 9.279 1.828 0.093 N63 SVR 64
SVR C65 C65 C 0 1 Y N N N N N 3.061 -0.319 2.669 10.106 1.326 1.097 C65 SVR 65
SVR C67 C67 C 0 1 Y N N N N N 1.987 -0.654 1.866 9.609 1.106 2.364 C67 SVR 66
SVR C70 C70 C 0 1 Y N N N N N 1.984 -1.794 1.103 10.426 0.604 3.372 C70 SVR 67
SVR C71 C71 C 0 1 Y N N N N N 3.073 -2.628 1.162 11.736 0.318 3.138 C71 SVR 68
SVR S75 S75 S 0 1 N N N N N N 3.009 -3.941 0.263 12.746 -0.317 4.436 S75 SVR 69
SVR O80 O80 O 0 1 N N N N N N 4.259 -4.115 -0.510 12.516 -1.718 4.474 O80 SVR 70
SVR O81 O81 O 0 1 N N N N N N 2.808 -5.108 1.151 14.034 0.255 4.258 O81 SVR 71
SVR O82 O82 O 0 1 N N N N N N 1.857 -3.825 -0.660 12.204 0.243 5.743 O82 SVR 72
SVR C66 C66 C 0 1 Y N N N N N 4.183 -1.159 2.767 11.460 1.032 0.824 C66 SVR 73
SVR C68 C68 C 0 1 Y N N N N N 4.159 -2.320 1.980 12.283 0.527 1.860 C68 SVR 74
SVR C72 C72 C 0 1 Y N N N N N 5.224 -3.204 1.993 13.632 0.240 1.590 C72 SVR 75
SVR C69 C69 C 0 1 Y N N N N N 5.317 -0.908 3.570 12.005 1.235 -0.453 C69 SVR 76
SVR S73 S73 S 0 1 N N N N N N 5.500 0.370 4.524 11.001 1.868 -1.755 S73 SVR 77
SVR O77 O77 O 0 1 N N N N N N 5.354 1.634 3.767 9.874 1.007 -1.848 O77 SVR 78
SVR O78 O78 O 0 1 N N N N N N 4.506 0.329 5.628 10.893 3.268 -1.533 O78 SVR 79
SVR O79 O79 O 0 1 N N N N N N 6.869 0.343 5.084 11.781 1.697 -3.050 O79 SVR 80
SVR C74 C74 C 0 1 Y N N N N N 6.379 -1.816 3.565 13.315 0.940 -0.681 C74 SVR 81
SVR C76 C76 C 0 1 Y N N N N N 6.334 -2.959 2.777 14.129 0.456 0.341 C76 SVR 82
SVR S83 S83 S 0 1 N N N N N N 7.523 -4.021 2.745 15.821 0.095 0.006 S83 SVR 83
SVR O85 O85 O 0 1 N N N N N N 6.971 -5.318 2.287 15.890 -1.352 -0.458 O85 SVR 84
SVR O86 O86 O 0 1 N N N N N N 8.580 -3.580 1.799 16.188 0.893 -1.112 O86 SVR 85
SVR O84 O84 O 0 1 N N N N N N 8.086 -4.176 4.107 16.498 0.149 1.255 O84 SVR 86
SVR H34 H34 H 0 1 N N N N N N 14.604 11.810 6.094 -16.009 4.438 0.512 H34 SVR 87
SVR H18 H18 H 0 1 N N N N N N 13.490 9.425 8.026 -13.755 0.865 0.192 H18 SVR 88
SVR H25 H25 H 0 1 N N N N N N 12.721 7.038 7.338 -13.083 -2.402 0.705 H25 SVR 89
SVR H16 H16 H 0 1 N N N N N N 16.590 11.600 9.989 -11.826 4.651 -0.044 H16 SVR 90
SVR H30 H30 H 0 1 N N N N N N 19.272 11.377 13.482 -8.356 7.131 1.228 H30 SVR 91
SVR H12 H12 H 0 1 N N N N N N 18.535 8.653 13.041 -7.382 3.793 1.348 H12 SVR 92
SVR H7 H7 H 0 1 N N N N N N 17.290 6.573 12.782 -7.305 1.391 1.859 H7 SVR 93
SVR HN1 HN1 H 0 1 N N N N N N 14.322 6.098 11.253 -9.960 -0.716 2.246 HN1 SVR 94
SVR H8 H8 H 0 1 N N N N N N 13.817 4.505 12.830 -6.649 -2.910 0.058 H8 SVR 95
SVR H9 H9 H 0 1 N N N N N N 15.807 2.634 9.520 -9.948 -2.486 2.764 H9 SVR 96
SVR H14 H14 H 0 1 N N N N N N 14.238 0.723 9.655 -9.924 -4.910 3.167 H14 SVR 97
SVR H271 H271 H 0 0 N N N N N N 12.613 -0.370 12.078 -8.932 -7.253 1.380 H271 SVR 98
SVR H272 H272 H 0 0 N N N N N N 11.234 0.743 11.782 -7.262 -7.140 1.985 H272 SVR 99
SVR H273 H273 H 0 0 N N N N N N 12.068 -0.042 10.398 -8.630 -6.957 3.109 H273 SVR 100
SVR H19 H19 H 0 1 N N N N N N 12.225 2.291 14.106 -6.656 -6.440 0.090 H19 SVR 101
SVR H37 H37 H 0 1 N N N N N N 8.078 3.077 12.541 -2.687 -4.392 -0.706 H37 SVR 102
SVR H38 H38 H 0 1 N N N N N N 11.138 2.617 15.502 -5.592 -7.538 -0.932 H38 SVR 103
SVR H40 H40 H 0 1 N N N N N N 9.411 2.498 17.263 -4.007 -8.903 -2.221 H40 SVR 104
SVR H42 H42 H 0 1 N N N N N N 7.021 2.668 16.670 -1.773 -8.028 -2.760 H42 SVR 105
SVR H41 H41 H 0 1 N N N N N N 5.372 2.614 14.921 -0.064 -6.273 -2.137 H41 SVR 106
SVR H44 H44 H 0 1 N N N N N N 3.667 3.201 13.666 1.299 -4.500 -2.825 H44 SVR 107
SVR H47 H47 H 0 1 N N N N N N 4.286 2.608 10.471 2.842 -2.604 -2.177 H47 SVR 108
SVR H48 H48 H 0 1 N N N N N N 3.112 5.898 12.949 -1.219 -2.098 -3.412 H48 SVR 109
SVR H50 H50 H 0 1 N N N N N N 2.163 7.062 10.987 -0.856 0.323 -3.644 H50 SVR 110
SVR H52 H52 H 0 1 N N N N N N 2.264 5.976 8.773 1.345 1.296 -3.142 H52 SVR 111
SVR H53 H53 H 0 1 N N N N N N 2.033 5.113 7.739 3.018 1.901 -2.681 H53 SVR 112
SVR H56 H56 H 0 1 N N N N N N 3.473 2.462 5.512 5.578 0.447 -0.749 H56 SVR 113
SVR H591 H591 H 0 0 N N N N N N 1.234 6.899 6.447 3.919 4.336 -3.566 H591 SVR 114
SVR H592 H592 H 0 0 N N N N N N -0.408 6.191 6.273 5.101 3.990 -4.851 H592 SVR 115
SVR H593 H593 H 0 0 N N N N N N 0.709 5.571 7.537 3.861 2.783 -4.433 H593 SVR 116
SVR H60 H60 H 0 1 N N N N N N -0.065 5.556 3.902 7.023 4.342 -3.419 H60 SVR 117
SVR H62 H62 H 0 1 N N N N N N 0.889 3.856 2.389 8.551 3.367 -1.759 H62 SVR 118
SVR H63 H63 H 0 1 N N N N N N 2.610 0.773 4.336 9.562 2.594 -0.431 H63 SVR 119
SVR H67 H67 H 0 1 N N N N N N 1.127 -0.001 1.839 8.573 1.326 2.576 H67 SVR 120
SVR H70 H70 H 0 1 N N N N N N 1.142 -2.031 0.469 10.015 0.441 4.357 H70 SVR 121
SVR H82 H82 H 0 1 N N N N N N 1.238 -4.524 -0.484 12.691 -0.045 6.527 H82 SVR 122
SVR H72 H72 H 0 1 N N N N N N 5.186 -4.095 1.384 14.271 -0.148 2.369 H72 SVR 123
SVR H79 H79 H 0 1 N N N N N N 7.331 1.134 4.831 11.315 2.016 -3.835 H79 SVR 124
SVR H74 H74 H 0 1 N N N N N N 7.245 -1.627 4.181 13.733 1.097 -1.665 H74 SVR 125
SVR H85 H85 H 0 1 N N N N N N 7.412 -5.586 1.489 16.784 -1.655 -0.670 H85 SVR 126
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SVR O35 S31 DOUB N N 1
SVR S31 O36 DOUB N N 2
SVR S31 O34 SING N N 3
SVR S31 C22 SING N N 4
SVR O34 H34 SING N N 5
SVR C22 C18 DOUB Y N 6
SVR C22 C16 SING Y N 7
SVR C18 C11 SING Y N 8
SVR C18 H18 SING N N 9
SVR C11 S17 SING N N 10
SVR C11 C6 DOUB Y N 11
SVR S17 O23 DOUB N N 12
SVR S17 O24 DOUB N N 13
SVR S17 O25 SING N N 14
SVR O25 H25 SING N N 15
SVR C16 C10 DOUB Y N 16
SVR C16 H16 SING N N 17
SVR C10 C15 SING Y N 18
SVR C10 C6 SING Y N 19
SVR C15 S21 SING N N 20
SVR C15 C12 DOUB Y N 21
SVR S21 O28 DOUB N N 22
SVR S21 O29 DOUB N N 23
SVR S21 O30 SING N N 24
SVR O30 H30 SING N N 25
SVR C12 C7 SING Y N 26
SVR C12 H12 SING N N 27
SVR C7 C3 DOUB Y N 28
SVR C7 H7 SING N N 29
SVR C6 C3 SING Y N 30
SVR C3 N1 SING N N 31
SVR N1 C2 SING N N 32
SVR N1 HN1 SING N N 33
SVR C2 O4 DOUB N N 34
SVR C2 C5 SING N N 35
SVR C5 C8 DOUB Y N 36
SVR C5 C9 SING Y N 37
SVR C8 C13 SING Y N 38
SVR C8 H8 SING N N 39
SVR C9 C14 DOUB Y N 40
SVR C9 H9 SING N N 41
SVR C14 C20 SING Y N 42
SVR C14 H14 SING N N 43
SVR C20 C27 SING N N 44
SVR C20 C13 DOUB Y N 45
SVR C27 H271 SING N N 46
SVR C27 H272 SING N N 47
SVR C27 H273 SING N N 48
SVR C13 N19 SING N N 49
SVR N19 C26 SING N N 50
SVR N19 H19 SING N N 51
SVR C26 O32 DOUB N N 52
SVR C26 C33 SING N N 53
SVR C33 C37 DOUB Y N 54
SVR C33 C38 SING Y N 55
SVR C37 C39 SING Y N 56
SVR C37 H37 SING N N 57
SVR C38 C40 DOUB Y N 58
SVR C38 H38 SING N N 59
SVR C40 C42 SING Y N 60
SVR C40 H40 SING N N 61
SVR C42 C39 DOUB Y N 62
SVR C42 H42 SING N N 63
SVR C39 N41 SING N N 64
SVR N41 C43 SING N N 65
SVR N41 H41 SING N N 66
SVR C43 O45 DOUB N N 67
SVR C43 N44 SING N N 68
SVR N44 C46 SING N N 69
SVR N44 H44 SING N N 70
SVR C46 C47 DOUB Y N 71
SVR C46 C48 SING Y N 72
SVR C47 C49 SING Y N 73
SVR C47 H47 SING N N 74
SVR C48 C50 DOUB Y N 75
SVR C48 H48 SING N N 76
SVR C50 C52 SING Y N 77
SVR C50 H50 SING N N 78
SVR C52 C49 DOUB Y N 79
SVR C52 H52 SING N N 80
SVR C49 C51 SING N N 81
SVR C51 O54 DOUB N N 82
SVR C51 N53 SING N N 83
SVR N53 C55 SING N N 84
SVR N53 H53 SING N N 85
SVR C55 C56 DOUB Y N 86
SVR C55 C57 SING Y N 87
SVR C56 C58 SING Y N 88
SVR C56 H56 SING N N 89
SVR C57 C59 SING N N 90
SVR C57 C60 DOUB Y N 91
SVR C59 H591 SING N N 92
SVR C59 H592 SING N N 93
SVR C59 H593 SING N N 94
SVR C60 C62 SING Y N 95
SVR C60 H60 SING N N 96
SVR C62 C58 DOUB Y N 97
SVR C62 H62 SING N N 98
SVR C58 C61 SING N N 99
SVR C61 O64 DOUB N N 100
SVR C61 N63 SING N N 101
SVR N63 C65 SING N N 102
SVR N63 H63 SING N N 103
SVR C65 C67 DOUB Y N 104
SVR C65 C66 SING Y N 105
SVR C67 C70 SING Y N 106
SVR C67 H67 SING N N 107
SVR C70 C71 DOUB Y N 108
SVR C70 H70 SING N N 109
SVR C71 S75 SING N N 110
SVR C71 C68 SING Y N 111
SVR S75 O80 DOUB N N 112
SVR S75 O81 DOUB N N 113
SVR S75 O82 SING N N 114
SVR O82 H82 SING N N 115
SVR C66 C68 DOUB Y N 116
SVR C66 C69 SING Y N 117
SVR C68 C72 SING Y N 118
SVR C72 C76 DOUB Y N 119
SVR C72 H72 SING N N 120
SVR C69 S73 SING N N 121
SVR C69 C74 DOUB Y N 122
SVR S73 O77 DOUB N N 123
SVR S73 O78 DOUB N N 124
SVR S73 O79 SING N N 125
SVR O79 H79 SING N N 126
SVR C74 C76 SING Y N 127
SVR C74 H74 SING N N 128
SVR C76 S83 SING N N 129
SVR S83 O85 SING N N 130
SVR S83 O86 DOUB N N 131
SVR S83 O84 DOUB N N 132
SVR O85 H85 SING N N 133
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SVR SMILES ACDLabs 12.01 O=S(=O)(O)c1c2c(cc(c1)S(=O)(=O)O)c(ccc2NC(=O)c3cc(c(cc3)C)NC(=O)c4cc(ccc4)NC(=O)Nc5cccc(c5)C(=O)Nc6c(ccc(c6)C(=O)Nc7ccc(c8c7c(cc(c8)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O)C)S(=O)(=O)O
SVR InChI InChI 1.03 InChI=1S/C51H40N6O23S6/c1-25-9-11-29(49(60)54-37-13-15-41(83(69,70)71)35-21-33(81(63,64)65)23-43(45(35)37)85(75,76)77)19-39(25)56-47(58)27-5-3-7-31(17-27)52-51(62)53-32-8-4-6-28(18-32)48(59)57-40-20-30(12-10-26(40)2)50(61)55-38-14-16-42(84(72,73)74)36-22-34(82(66,67)68)24-44(46(36)38)86(78,79)80/h3-24H,1-2H3,(H,54,60)(H,55,61)(H,56,58)(H,57,59)(H2,52,53,62)(H,63,64,65)(H,66,67,68)(H,69,70,71)(H,72,73,74)(H,75,76,77)(H,78,79,80)
SVR InChIKey InChI 1.03 FIAFUQMPZJWCLV-UHFFFAOYSA-N
SVR SMILES_CANONICAL CACTVS 3.370 Cc1ccc(cc1NC(=O)c2cccc(NC(=O)Nc3cccc(c3)C(=O)Nc4cc(ccc4C)C(=O)Nc5ccc(c6cc(cc(c56)[S](O)(=O)=O)[S](O)(=O)=O)[S](O)(=O)=O)c2)C(=O)Nc7ccc(c8cc(cc(c78)[S](O)(=O)=O)[S](O)(=O)=O)[S](O)(=O)=O
SVR SMILES CACTVS 3.370 Cc1ccc(cc1NC(=O)c2cccc(NC(=O)Nc3cccc(c3)C(=O)Nc4cc(ccc4C)C(=O)Nc5ccc(c6cc(cc(c56)[S](O)(=O)=O)[S](O)(=O)=O)[S](O)(=O)=O)c2)C(=O)Nc7ccc(c8cc(cc(c78)[S](O)(=O)=O)[S](O)(=O)=O)[S](O)(=O)=O
SVR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1NC(=O)c2cccc(c2)NC(=O)Nc3cccc(c3)C(=O)Nc4cc(ccc4C)C(=O)Nc5ccc(c6c5c(cc(c6)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O)C(=O)Nc7ccc(c8c7c(cc(c8)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O
SVR SMILES "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1NC(=O)c2cccc(c2)NC(=O)Nc3cccc(c3)C(=O)Nc4cc(ccc4C)C(=O)Nc5ccc(c6c5c(cc(c6)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O)C(=O)Nc7ccc(c8c7c(cc(c8)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SVR "SYSTEMATIC NAME" ACDLabs 12.01 "8-[(4-methyl-3-{[3-({[3-({2-methyl-5-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl}carbamoyl)phenyl]carbamoyl}amino)benzoyl]amino}benzoyl)amino]naphthalene-1,3,5-trisulfonic acid"
SVR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "8-[[4-methyl-3-[[3-[[3-[[2-methyl-5-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl]carbamoyl]phenyl]carbamoylamino]phenyl]carbonylamino]phenyl]carbonylamino]naphthalene-1,3,5-trisulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SVR 'Create component' 2004-12-15 RCSB
SVR 'Modify descriptor' 2011-06-04 RCSB
SVR 'Other modification' 2011-06-29 RCSB
SVR 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SVR
_pdbx_chem_comp_synonyms.name SURAMIN
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id SVR
_pdbe_chem_comp_drugbank_details.drugbank_id DB04786
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Suramin
_pdbe_chem_comp_drugbank_details.description
'A polyanionic compound with an unknown mechanism of action. It is used parenterally in the treatment of African trypanosomiasis and it has been used clinically with diethylcarbamazine to kill the adult Onchocerca. (From AMA Drug Evaluations Annual, 1992, p1643) It has also been shown to have potent antineoplastic properties. Suramin is manufactured by Bayer in Germany as Germanin®.'
_pdbe_chem_comp_drugbank_details.cas_number 145-63-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action
"The mechanism is unknown, but the trypanocidal activity may be due to the inhibition of enzymes involved with the oxidation of reduced nicotinamide-adenine dinucleotide (NADH), which functions as a co-enzyme in many cellular reactions, such as respiration and glycolysis, in the trypanosome parasite. Suramin's action in the treatment of onchocerciasis is macrofilaricidal and partially microfilaricidal. It may also act as an antagonist of P2 receptors and as an agonist of Ryanodine receptors. It also can inhibit follicle-stimulating hormone receptors."
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SVR SURAMIN wwPDB ?
SVR Suramin DrugBank ?
SVR Suramine DrugBank ?
SVR '309 Fourneau' DrugBank 'International brand'
SVR Antrypol DrugBank 'International brand'
SVR 'Bayer 205' DrugBank 'International brand'
SVR Belganyl DrugBank 'International brand'
SVR Germanin DrugBank 'International brand'
SVR Moranyl DrugBank 'International brand'
SVR Naganin DrugBank 'International brand'
SVR Naganine DrugBank 'International brand'
SVR Naganol DrugBank 'International brand'
SVR Naphuride DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id SVR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04786
_pdbe_chem_comp_drugbank_classification.parent Benzanilides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as benzanilides. These are aromatic compounds containing an anilide group in which the carboxamide group is substituted with a benzene ring. They have the general structure RNC(=O)R', where R,R'= benzene."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
SVR DB04786 'P2Y purinoceptor 2' Humans P41231 yes 1
SVR DB04786 'NAD-dependent protein deacylase sirtuin-5, mitochondrial' Humans Q9NXA8 yes 2
SVR DB04786 'Follicle-stimulating hormone receptor' Humans P23945 yes 3
SVR DB04786 Heparanase Humans Q9Y251 unknown 4
SVR DB04786 'Ryanodine receptor 1' Humans P21817 unknown 5
SVR DB04786 Prothrombin Humans P00734 unknown 6
SVR DB04786 'Phospholipase A2, membrane associated' Humans P14555 unknown 7
SVR DB04786 'Complement control protein C3' VACV P68638 unknown 8
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SVR O35 O 3.805 4.691 1
SVR S31 S 5.104 3.941 2
SVR O36 O 5.854 5.239 3
SVR O34 O 4.354 2.642 4
SVR C22 C 6.404 3.191 5
SVR C18 C 6.404 1.690 6
SVR C11 C 7.702 0.941 7
SVR S17 S 6.953 -0.359 8
SVR O23 O 5.654 0.392 9
SVR O24 O 6.203 -1.658 10
SVR O25 O 8.252 -1.109 11
SVR C16 C 7.702 3.941 12
SVR C10 C 9.002 3.191 13
SVR C15 C 10.342 3.992 14
SVR S21 S 10.325 5.492 15
SVR O28 O 10.308 6.992 16
SVR O29 O 11.825 5.510 17
SVR O30 O 8.825 5.475 18
SVR C12 C 11.701 3.222 19
SVR C7 C 11.701 1.659 20
SVR C6 C 9.002 1.690 21
SVR C3 C 10.342 0.888 22
SVR N1 N 11.078 -0.419 23
SVR C2 C 12.577 -0.436 24
SVR O4 O 13.342 0.854 25
SVR C5 C 13.312 -1.744 26
SVR C8 C 14.812 -1.761 27
SVR C9 C 12.547 -3.034 28
SVR C14 C 13.282 -4.342 29
SVR C20 C 14.782 -4.359 30
SVR C27 C 15.517 -5.667 31
SVR C13 C 15.547 -3.069 32
SVR N19 N 17.047 -3.086 33
SVR C26 C 17.812 -1.796 34
SVR O32 O 17.077 -0.488 35
SVR C33 C 19.312 -1.813 36
SVR C37 C 20.047 -3.121 37
SVR C38 C 20.077 -0.523 38
SVR C40 C 21.577 -0.541 39
SVR C42 C 22.312 -1.848 40
SVR C39 C 21.547 -3.138 41
SVR N41 N 22.282 -4.446 42
SVR C43 C 23.781 -4.463 43
SVR O45 O 24.547 -3.173 44
SVR N44 N 24.516 -5.771 45
SVR C46 C 26.016 -5.788 46
SVR C47 C 26.781 -4.498 47
SVR C48 C 26.751 -7.096 48
SVR C50 C 28.251 -7.113 49
SVR C52 C 29.016 -5.823 50
SVR C49 C 28.281 -4.515 51
SVR C51 C 29.046 -3.225 52
SVR O54 O 28.311 -1.918 53
SVR N53 N 30.546 -3.243 54
SVR C55 C 31.311 -1.952 55
SVR C56 C 32.811 -1.970 56
SVR C57 C 30.576 -0.645 57
SVR C59 C 29.076 -0.627 58
SVR C60 C 31.341 0.646 59
SVR C62 C 32.841 0.628 60
SVR C58 C 33.576 -0.679 61
SVR C61 C 35.076 -0.697 62
SVR O64 O 35.811 -2.004 63
SVR N63 N 35.841 0.594 64
SVR C65 C 37.341 0.576 65
SVR C67 C 38.111 -0.783 66
SVR C70 C 39.674 -0.783 67
SVR C71 C 40.445 0.576 68
SVR S75 S 41.944 0.594 69
SVR O80 O 43.444 0.611 70
SVR O81 O 41.962 -0.906 71
SVR O82 O 41.927 2.094 72
SVR C66 C 38.143 1.917 73
SVR C68 C 39.643 1.917 74
SVR C72 C 40.393 3.216 75
SVR C69 C 37.393 3.216 76
SVR S73 S 36.094 3.966 77
SVR O77 O 34.795 4.716 78
SVR O78 O 36.844 5.265 79
SVR O79 O 35.344 2.667 80
SVR C74 C 38.143 4.515 81
SVR C76 C 39.643 4.515 82
SVR S83 S 40.393 5.814 83
SVR O85 O 41.143 7.113 84
SVR O86 O 41.692 5.064 85
SVR O84 O 39.094 6.564 86
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SVR O35 S31 DOUBLE NONE 1
SVR S31 O36 DOUBLE NONE 2
SVR S31 O34 SINGLE NONE 3
SVR S31 C22 SINGLE NONE 4
SVR C22 C18 DOUBLE NONE 5
SVR C22 C16 SINGLE NONE 6
SVR C18 C11 SINGLE NONE 7
SVR C11 S17 SINGLE NONE 8
SVR C11 C6 DOUBLE NONE 9
SVR S17 O23 DOUBLE NONE 10
SVR S17 O24 DOUBLE NONE 11
SVR S17 O25 SINGLE NONE 12
SVR C16 C10 DOUBLE NONE 13
SVR C10 C15 SINGLE NONE 14
SVR C10 C6 SINGLE NONE 15
SVR C15 S21 SINGLE NONE 16
SVR C15 C12 DOUBLE NONE 17
SVR S21 O28 DOUBLE NONE 18
SVR S21 O29 DOUBLE NONE 19
SVR S21 O30 SINGLE NONE 20
SVR C12 C7 SINGLE NONE 21
SVR C7 C3 DOUBLE NONE 22
SVR C6 C3 SINGLE NONE 23
SVR C3 N1 SINGLE NONE 24
SVR N1 C2 SINGLE NONE 25
SVR C2 O4 DOUBLE NONE 26
SVR C2 C5 SINGLE NONE 27
SVR C5 C8 DOUBLE NONE 28
SVR C5 C9 SINGLE NONE 29
SVR C8 C13 SINGLE NONE 30
SVR C9 C14 DOUBLE NONE 31
SVR C14 C20 SINGLE NONE 32
SVR C20 C27 SINGLE NONE 33
SVR C20 C13 DOUBLE NONE 34
SVR C13 N19 SINGLE NONE 35
SVR N19 C26 SINGLE NONE 36
SVR C26 O32 DOUBLE NONE 37
SVR C26 C33 SINGLE NONE 38
SVR C33 C37 DOUBLE NONE 39
SVR C33 C38 SINGLE NONE 40
SVR C37 C39 SINGLE NONE 41
SVR C38 C40 DOUBLE NONE 42
SVR C40 C42 SINGLE NONE 43
SVR C42 C39 DOUBLE NONE 44
SVR C39 N41 SINGLE NONE 45
SVR N41 C43 SINGLE NONE 46
SVR C43 O45 DOUBLE NONE 47
SVR C43 N44 SINGLE NONE 48
SVR N44 C46 SINGLE NONE 49
SVR C46 C47 DOUBLE NONE 50
SVR C46 C48 SINGLE NONE 51
SVR C47 C49 SINGLE NONE 52
SVR C48 C50 DOUBLE NONE 53
SVR C50 C52 SINGLE NONE 54
SVR C52 C49 DOUBLE NONE 55
SVR C49 C51 SINGLE NONE 56
SVR C51 O54 DOUBLE NONE 57
SVR C51 N53 SINGLE NONE 58
SVR N53 C55 SINGLE NONE 59
SVR C55 C56 DOUBLE NONE 60
SVR C55 C57 SINGLE NONE 61
SVR C56 C58 SINGLE NONE 62
SVR C57 C59 SINGLE NONE 63
SVR C57 C60 DOUBLE NONE 64
SVR C60 C62 SINGLE NONE 65
SVR C62 C58 DOUBLE NONE 66
SVR C58 C61 SINGLE NONE 67
SVR C61 O64 DOUBLE NONE 68
SVR C61 N63 SINGLE NONE 69
SVR N63 C65 SINGLE NONE 70
SVR C65 C67 DOUBLE NONE 71
SVR C65 C66 SINGLE NONE 72
SVR C67 C70 SINGLE NONE 73
SVR C70 C71 DOUBLE NONE 74
SVR C71 S75 SINGLE NONE 75
SVR C71 C68 SINGLE NONE 76
SVR S75 O80 DOUBLE NONE 77
SVR S75 O81 DOUBLE NONE 78
SVR S75 O82 SINGLE NONE 79
SVR C66 C68 DOUBLE NONE 80
SVR C66 C69 SINGLE NONE 81
SVR C68 C72 SINGLE NONE 82
SVR C72 C76 DOUBLE NONE 83
SVR C69 S73 SINGLE NONE 84
SVR C69 C74 DOUBLE NONE 85
SVR S73 O77 DOUBLE NONE 86
SVR S73 O78 DOUBLE NONE 87
SVR S73 O79 SINGLE NONE 88
SVR C74 C76 SINGLE NONE 89
SVR C76 S83 SINGLE NONE 90
SVR S83 O85 SINGLE NONE 91
SVR S83 O86 DOUBLE NONE 92
SVR S83 O84 DOUBLE NONE 93
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SVR MurckoScaffold S1 scaffold O=C(Nc1cccc(C(=O)Nc2cccc(C(=O)Nc3cccc4ccccc34)c2)c1)Nc1cccc(C(=O)Nc2cccc(C(=O)Nc3cccc4ccccc34)c2)c1 InChI=1S/C49H36N6O5/c56-45(50-37-19-5-17-35(27-37)47(58)54-43-25-9-13-31-11-1-3-23-41(31)43)33-15-7-21-39(29-33)52-49(60)53-40-22-8-16-34(30-40)46(57)51-38-20-6-18-36(28-38)48(59)55-44-26-10-14-32-12-2-4-24-42(32)44/h1-30H,(H,50,56)(H,51,57)(H,54,58)(H,55,59)(H2,52,53,60) FJMSNDUFAXRICW-UHFFFAOYSA-N
SVR amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
SVR napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
SVR phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SVR C22 S1 1
SVR C18 S1 1
SVR C11 S1 1
SVR C16 S1 1
SVR C10 S1 1
SVR C15 S1 1
SVR C12 S1 1
SVR C7 S1 1
SVR C6 S1 1
SVR C3 S1 1
SVR N1 S1 1
SVR C2 S1 1
SVR O4 S1 1
SVR C5 S1 1
SVR C8 S1 1
SVR C9 S1 1
SVR C14 S1 1
SVR C20 S1 1
SVR C13 S1 1
SVR N19 S1 1
SVR C26 S1 1
SVR O32 S1 1
SVR C33 S1 1
SVR C37 S1 1
SVR C38 S1 1
SVR C40 S1 1
SVR C42 S1 1
SVR C39 S1 1
SVR N41 S1 1
SVR C43 S1 1
SVR O45 S1 1
SVR N44 S1 1
SVR C46 S1 1
SVR C47 S1 1
SVR C48 S1 1
SVR C50 S1 1
SVR C52 S1 1
SVR C49 S1 1
SVR C51 S1 1
SVR O54 S1 1
SVR N53 S1 1
SVR C55 S1 1
SVR C56 S1 1
SVR C57 S1 1
SVR C60 S1 1
SVR C62 S1 1
SVR C58 S1 1
SVR C61 S1 1
SVR O64 S1 1
SVR N63 S1 1
SVR C65 S1 1
SVR C67 S1 1
SVR C70 S1 1
SVR C71 S1 1
SVR C66 S1 1
SVR C68 S1 1
SVR C72 S1 1
SVR C69 S1 1
SVR C74 S1 1
SVR C76 S1 1
SVR N1 F1 1
SVR C2 F1 1
SVR O4 F1 1
SVR C5 F1 1
SVR N19 F1 2
SVR C26 F1 2
SVR O32 F1 2
SVR C33 F1 2
SVR N53 F1 3
SVR C51 F1 3
SVR O54 F1 3
SVR C49 F1 3
SVR N63 F1 4
SVR C61 F1 4
SVR O64 F1 4
SVR C58 F1 4
SVR C22 F2 1
SVR C18 F2 1
SVR C11 F2 1
SVR C6 F2 1
SVR C10 F2 1
SVR C16 F2 1
SVR C15 F2 1
SVR C12 F2 1
SVR C7 F2 1
SVR C3 F2 1
SVR C67 F2 2
SVR C70 F2 2
SVR C71 F2 2
SVR C68 F2 2
SVR C66 F2 2
SVR C65 F2 2
SVR C69 F2 2
SVR C74 F2 2
SVR C76 F2 2
SVR C72 F2 2
SVR C22 F3 1
SVR C18 F3 1
SVR C11 F3 1
SVR C6 F3 1
SVR C10 F3 1
SVR C16 F3 1
SVR C10 F3 2
SVR C15 F3 2
SVR C12 F3 2
SVR C7 F3 2
SVR C3 F3 2
SVR C6 F3 2
SVR C5 F3 3
SVR C8 F3 3
SVR C13 F3 3
SVR C20 F3 3
SVR C14 F3 3
SVR C9 F3 3
SVR C33 F3 4
SVR C37 F3 4
SVR C39 F3 4
SVR C42 F3 4
SVR C40 F3 4
SVR C38 F3 4
SVR C46 F3 5
SVR C47 F3 5
SVR C49 F3 5
SVR C52 F3 5
SVR C50 F3 5
SVR C48 F3 5
SVR C55 F3 6
SVR C56 F3 6
SVR C58 F3 6
SVR C62 F3 6
SVR C60 F3 6
SVR C57 F3 6
SVR C65 F3 7
SVR C67 F3 7
SVR C70 F3 7
SVR C71 F3 7
SVR C68 F3 7
SVR C66 F3 7
SVR C66 F3 8
SVR C68 F3 8
SVR C72 F3 8
SVR C76 F3 8
SVR C74 F3 8
SVR C69 F3 8
#
_pdbe_chem_comp_rdkit_properties.comp_id SVR
_pdbe_chem_comp_rdkit_properties.exactmw 1296.047
_pdbe_chem_comp_rdkit_properties.amw 1297.302
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 29
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 12
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 24
_pdbe_chem_comp_rdkit_properties.NumHBD 12
_pdbe_chem_comp_rdkit_properties.NumHBA 23
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 86
_pdbe_chem_comp_rdkit_properties.NumAtoms 126
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 35
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 6
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.039
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 8
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 543.581
_pdbe_chem_comp_rdkit_properties.tpsa 483.750
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.626
_pdbe_chem_comp_rdkit_properties.CrippenMR 298.948
_pdbe_chem_comp_rdkit_properties.chi0v 44.921
_pdbe_chem_comp_rdkit_properties.chi1v 29.378
_pdbe_chem_comp_rdkit_properties.chi2v 14.468
_pdbe_chem_comp_rdkit_properties.chi3v 14.468
_pdbe_chem_comp_rdkit_properties.chi4v 9.976
_pdbe_chem_comp_rdkit_properties.chi0n 80.022
_pdbe_chem_comp_rdkit_properties.chi1n 40.061
_pdbe_chem_comp_rdkit_properties.chi2n 9.835
_pdbe_chem_comp_rdkit_properties.chi3n 9.835
_pdbe_chem_comp_rdkit_properties.chi4n 6.429
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -9.110
_pdbe_chem_comp_rdkit_properties.kappa1 28.851
_pdbe_chem_comp_rdkit_properties.kappa2 23.049
_pdbe_chem_comp_rdkit_properties.kappa3 14.001
_pdbe_chem_comp_rdkit_properties.Phi 7.733
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SVR UniChem DrugBank DB04786
SVR UniChem 'Guide to Pharmacology' 1728
SVR UniChem 'KEGG LIGAND' C07974
SVR UniChem ChEBI 45906
SVR UniChem eMolecules 731081
SVR UniChem fdasrs 6032D45BEM
SVR UniChem PharmGKB PA10292
SVR UniChem HMDB HMDB0015582
SVR UniChem LINCS LSM-5775
SVR UniChem DrugCentral 2966
SVR UniChem BRENDA 243916
SVR UniChem ChemicalBook CB8906847
SVR UniChem ClinicalTrials BAYER-205
SVR UniChem ClinicalTrials CI-1003
SVR UniChem ClinicalTrials FARMA
SVR UniChem ClinicalTrials FOURNEAU
SVR UniChem ClinicalTrials FOURNEAU-309
SVR UniChem ClinicalTrials METARET
SVR UniChem ClinicalTrials NAGANOL
SVR UniChem ClinicalTrials NSC-34936
SVR UniChem ClinicalTrials SURAMIN
SVR UniChem ClinicalTrials 'SURAMIN HEXASODIUM'
SVR UniChem ClinicalTrials 'SURAMIN SODIUM'
SVR UniChem rxnorm SURAMIN
SVR UniChem MedChemExpress HY-B0879
SVR UniChem 'Probes And Drugs' PD009369
SVR UniChem 'EPA CompTox Dashboard' DTXSID1046344
SVR UniChem SureChEMBL SCHEMBL3161
SVR UniChem 'PubChem TPHARMA' 14792752
SVR UniChem PubChem 135973538
SVR UniChem PubChem 4261196
SVR UniChem PubChem 5361
SVR UniChem ACTor 129-46-4
SVR UniChem ACTor 145-63-1
SVR UniChem Nikkaji J193.647F
SVR UniChem BindingDb 50336799
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SVR O35 -12.203 6.250 0.333 ETKDGv3 1
SVR S31 -13.059 5.365 -0.528 ETKDGv3 2
SVR O36 -14.484 5.840 -0.483 ETKDGv3 3
SVR O34 -12.490 5.427 -2.109 ETKDGv3 4
SVR C22 -12.978 3.710 0.064 ETKDGv3 5
SVR C18 -13.159 2.684 -0.773 ETKDGv3 6
SVR C11 -13.091 1.285 -0.290 ETKDGv3 7
SVR S17 -13.621 0.031 -1.425 ETKDGv3 8
SVR O23 -12.452 -0.461 -2.230 ETKDGv3 9
SVR O24 -14.643 0.619 -2.358 ETKDGv3 10
SVR O25 -14.347 -1.245 -0.605 ETKDGv3 11
SVR C16 -12.791 3.453 1.503 ETKDGv3 12
SVR C10 -12.715 2.192 1.969 ETKDGv3 13
SVR C15 -12.698 1.889 3.431 ETKDGv3 14
SVR S21 -12.849 3.163 4.654 ETKDGv3 15
SVR O28 -14.100 3.960 4.408 ETKDGv3 16
SVR O29 -11.654 4.071 4.578 ETKDGv3 17
SVR O30 -12.922 2.506 6.202 ETKDGv3 18
SVR C12 -12.609 0.614 3.835 ETKDGv3 19
SVR C7 -12.422 -0.495 2.884 ETKDGv3 20
SVR C6 -12.742 1.047 1.005 ETKDGv3 21
SVR C3 -12.418 -0.304 1.558 ETKDGv3 22
SVR N1 -11.894 -1.355 0.733 ETKDGv3 23
SVR C2 -10.671 -1.190 -0.003 ETKDGv3 24
SVR O4 -10.025 -0.110 0.095 ETKDGv3 25
SVR C5 -10.151 -2.279 -0.867 ETKDGv3 26
SVR C8 -8.856 -2.303 -1.233 ETKDGv3 27
SVR C9 -11.058 -3.337 -1.375 ETKDGv3 28
SVR C14 -10.592 -4.305 -2.171 ETKDGv3 29
SVR C20 -9.161 -4.347 -2.554 ETKDGv3 30
SVR C27 -8.683 -5.461 -3.445 ETKDGv3 31
SVR C13 -8.322 -3.385 -2.103 ETKDGv3 32
SVR N19 -6.935 -3.368 -2.489 ETKDGv3 33
SVR C26 -5.882 -2.976 -1.594 ETKDGv3 34
SVR O32 -6.083 -2.996 -0.348 ETKDGv3 35
SVR C33 -4.549 -2.586 -2.115 ETKDGv3 36
SVR C37 -3.464 -2.615 -1.317 ETKDGv3 37
SVR C38 -4.392 -2.137 -3.523 ETKDGv3 38
SVR C40 -3.187 -1.796 -3.994 ETKDGv3 39
SVR C42 -2.002 -1.854 -3.118 ETKDGv3 40
SVR C39 -2.129 -2.220 -1.829 ETKDGv3 41
SVR N41 -0.991 -2.312 -0.956 ETKDGv3 42
SVR C43 0.125 -1.408 -0.981 ETKDGv3 43
SVR O45 0.076 -0.355 -1.673 ETKDGv3 44
SVR N44 1.297 -1.715 -0.212 ETKDGv3 45
SVR C46 2.371 -0.787 0.022 ETKDGv3 46
SVR C47 3.628 -1.245 0.154 ETKDGv3 47
SVR C48 2.106 0.664 0.200 ETKDGv3 48
SVR C50 3.112 1.505 0.461 ETKDGv3 49
SVR C52 4.493 1.000 0.573 ETKDGv3 50
SVR C49 4.756 -0.311 0.418 ETKDGv3 51
SVR C51 6.147 -0.812 0.534 ETKDGv3 52
SVR O54 6.963 -0.195 1.273 ETKDGv3 53
SVR N53 6.570 -1.992 -0.174 ETKDGv3 54
SVR C55 7.900 -2.532 -0.088 ETKDGv3 55
SVR C56 8.973 -1.730 -0.218 ETKDGv3 56
SVR C57 8.097 -4.003 0.059 ETKDGv3 57
SVR C59 6.912 -4.922 0.176 ETKDGv3 58
SVR C60 9.342 -4.506 0.049 ETKDGv3 59
SVR C62 10.512 -3.615 -0.064 ETKDGv3 60
SVR C58 10.350 -2.284 -0.175 ETKDGv3 61
SVR C61 11.528 -1.387 -0.270 ETKDGv3 62
SVR O64 12.641 -1.857 -0.635 ETKDGv3 63
SVR N63 11.426 0.000 0.095 ETKDGv3 64
SVR C65 12.455 0.964 -0.175 ETKDGv3 65
SVR C67 12.965 1.040 -1.414 ETKDGv3 66
SVR C70 13.780 2.190 -1.825 ETKDGv3 67
SVR C71 13.962 3.227 -0.998 ETKDGv3 68
SVR S75 14.910 4.617 -1.553 ETKDGv3 69
SVR O80 16.042 4.860 -0.595 ETKDGv3 70
SVR O81 15.486 4.360 -2.918 ETKDGv3 71
SVR O82 13.930 5.981 -1.624 ETKDGv3 72
SVR C66 12.777 2.038 0.821 ETKDGv3 73
SVR C68 13.396 3.170 0.386 ETKDGv3 74
SVR C72 13.482 4.346 1.290 ETKDGv3 75
SVR C69 12.431 1.919 2.282 ETKDGv3 76
SVR S73 12.186 0.358 3.088 ETKDGv3 77
SVR O77 12.977 -0.719 2.400 ETKDGv3 78
SVR O78 10.727 -0.003 3.086 ETKDGv3 79
SVR O79 12.713 0.452 4.683 ETKDGv3 80
SVR C74 12.495 3.008 3.062 ETKDGv3 81
SVR C76 13.004 4.287 2.536 ETKDGv3 82
SVR S83 13.091 5.698 3.586 ETKDGv3 83
SVR O85 14.636 5.827 4.234 ETKDGv3 84
SVR O86 12.097 5.558 4.705 ETKDGv3 85
SVR O84 12.762 6.940 2.805 ETKDGv3 86
SVR H34 -12.593 6.374 -2.381 ETKDGv3 87
SVR H18 -13.349 2.874 -1.822 ETKDGv3 88
SVR H25 -14.497 -1.941 -1.295 ETKDGv3 89
SVR H16 -12.760 4.303 2.168 ETKDGv3 90
SVR H30 -13.840 2.144 6.285 ETKDGv3 91
SVR H12 -12.605 0.370 4.889 ETKDGv3 92
SVR H7 -12.173 -1.470 3.286 ETKDGv3 93
SVR HN1 -12.241 -2.324 0.910 ETKDGv3 94
SVR H8 -8.183 -1.522 -0.901 ETKDGv3 95
SVR H9 -12.113 -3.322 -1.138 ETKDGv3 96
SVR H14 -11.276 -5.059 -2.542 ETKDGv3 97
SVR H271 -9.456 -6.252 -3.546 ETKDGv3 98
SVR H272 -7.772 -5.932 -3.019 ETKDGv3 99
SVR H273 -8.458 -5.062 -4.456 ETKDGv3 100
SVR H19 -6.670 -3.722 -3.435 ETKDGv3 101
SVR H37 -3.547 -2.936 -0.285 ETKDGv3 102
SVR H38 -5.249 -2.063 -4.179 ETKDGv3 103
SVR H40 -3.079 -1.472 -5.021 ETKDGv3 104
SVR H42 -1.034 -1.620 -3.540 ETKDGv3 105
SVR H41 -1.024 -3.016 -0.185 ETKDGv3 106
SVR H44 1.407 -2.698 0.127 ETKDGv3 107
SVR H47 3.811 -2.309 0.082 ETKDGv3 108
SVR H48 1.096 1.049 0.157 ETKDGv3 109
SVR H50 2.914 2.560 0.602 ETKDGv3 110
SVR H52 5.289 1.708 0.772 ETKDGv3 111
SVR H53 5.877 -2.518 -0.750 ETKDGv3 112
SVR H56 8.829 -0.676 -0.411 ETKDGv3 113
SVR H591 7.205 -5.920 0.568 ETKDGv3 114
SVR H592 6.447 -5.053 -0.823 ETKDGv3 115
SVR H593 6.164 -4.491 0.874 ETKDGv3 116
SVR H60 9.510 -5.573 0.136 ETKDGv3 117
SVR H62 11.501 -4.056 -0.036 ETKDGv3 118
SVR H63 10.584 0.333 0.612 ETKDGv3 119
SVR H67 12.699 0.307 -2.166 ETKDGv3 120
SVR H70 14.182 2.201 -2.830 ETKDGv3 121
SVR H82 13.173 5.721 -2.207 ETKDGv3 122
SVR H72 13.898 5.278 0.936 ETKDGv3 123
SVR H79 13.689 0.614 4.621 ETKDGv3 124
SVR H74 12.258 2.940 4.116 ETKDGv3 125
SVR H85 15.233 5.937 3.451 ETKDGv3 126
#