Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SC7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 83


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 F1 F F1 N N N 0 1.111 -5.309 0.744
2 F2 F F2 N N N 0 -1.684 -3.213 -2.456
3 C1 C C1 N Y N 0 -4.021 1.754 -1.044
4 C2 C C2 N Y N 0 -3.968 0.591 -0.272
5 N1 N N1 N N N 0 -6.174 0.722 0.782
6 C3 C C3 N Y N 0 -2.735 0.023 0.042
7 C4 C C4 N Y N 0 -1.563 0.621 -0.415
8 C5 C C5 N Y N 0 -1.63 1.784 -1.186
9 C6 C C6 N Y N 0 -2.855 2.341 -1.495
10 C7 C C7 N N N 0 -5.217 -0.036 0.21
11 O1 O O1 N N N 0 -5.381 -1.234 0.09
12 C8 C C8 N N N 0 -6.03 2.179 0.82
13 C9 C C9 N N N 0 -7.359 0.087 1.366
14 C10 C C10 N N N 0 -7.045 -0.361 2.795
15 C11 C C11 N N N 0 -8.283 -1.023 3.404
16 C12 C C12 N N N 0 -6.853 2.803 -0.308
17 C13 C C13 N N N 0 -6.587 4.309 -0.361
18 C14 C C14 N N N 0 -2.92 3.596 -2.327
19 C15 C C15 N N N 0 -0.25 0.025 -0.086
20 O2 O O2 N N N 0 -0.193 -0.987 0.585
21 N2 N N2 N N N 0 0.883 0.604 -0.53
22 C16 C C16 S N N 0 2.183 0.014 -0.203
23 C17 C C17 R N N 0 3.261 1.099 -0.248
24 O3 O O3 N N N 0 3.392 1.586 -1.585
25 C18 C C18 N N N 0 2.517 -1.079 -1.22
26 C19 C C19 N Y N 0 1.525 -2.205 -1.091
27 C20 C C20 N Y N 0 1.776 -3.251 -0.223
28 C21 C C21 N Y N 0 0.865 -4.287 -0.104
29 C22 C C22 N Y N 0 -0.298 -4.274 -0.854
30 C23 C C23 N Y N 0 -0.549 -3.226 -1.723
31 C24 C C24 N Y N 0 0.361 -2.189 -1.837
32 C25 C C25 R N N 0 4.596 0.511 0.214
33 C26 C C26 N N N 0 5.674 1.596 0.169
34 C27 C C27 S N N 0 7.004 1.009 0.651
35 C28 C C28 N N N 0 6.823 0.45 2.065
36 C29 C C29 N N N 0 5.712 -0.602 2.055
37 N3 N N3 N N N 0 4.461 0.01 1.587
38 O4 O O4 N N N 0 8.001 2.032 0.665
39 C30 C C30 N N N 0 9.327 1.555 0.428
40 C31 C C31 N N N 0 10.306 2.73 0.466
41 H1 H H1 N N N 0 -4.976 2.193 -1.292
42 H3 H H3 N N N 0 -2.689 -0.876 0.639
43 H5 H H5 N N N 0 -0.722 2.248 -1.542
44 H81 H 1H8 N N N 0 -6.385 2.554 1.78
45 H82 H 2H8 N N N 0 -4.98 2.443 0.693
46 H91 H 1H9 N N N 0 -8.182 0.801 1.381
47 H111 H 1H11 N N N 0 -8.059 -1.342 4.422
48 H92 H 2H9 N N N 0 -7.64 -0.779 0.767
49 H101 H 1H10 N N N 0 -6.222 -1.075 2.779
50 H102 H 2H10 N N N 0 -6.765 0.505 3.394
51 H112 H 2H11 N N N 0 -9.106 -0.31 3.42
52 H113 H 3H11 N N N 0 -8.564 -1.889 2.805
53 H121 H 1H12 N N N 0 -6.57 2.35 -1.258
54 H122 H 2H12 N N N 0 -7.913 2.628 -0.123
55 H131 H 1H13 N N N 0 -7.174 4.753 -1.165
56 H132 H 2H13 N N N 0 -6.87 4.762 0.589
57 H133 H 3H13 N N N 0 -5.527 4.484 -0.545
58 H141 H 1H14 N N N 0 -2.892 4.468 -1.673
59 H142 H 2H14 N N N 0 -2.069 3.625 -3.008
60 H143 H 3H14 N N N 0 -3.846 3.603 -2.902
61 HN2 H HN2 N N N 0 0.837 1.412 -1.065
62 H16 H H16 N N N 0 2.145 -0.419 0.797
63 H17 H H17 N N N 0 2.978 1.92 0.412
64 HO3 H HO3 N N N 0 3.643 0.908 -2.227
65 H181 H 1H18 N N N 0 2.468 -0.665 -2.227
66 H182 H 2H18 N N N 0 3.522 -1.456 -1.031
67 H20 H H20 N N N 0 2.684 -3.261 0.362
68 H22 H H22 N N N 0 -1.01 -5.082 -0.762
69 H24 H H24 N N N 0 0.164 -1.369 -2.511
70 H25 H H25 N N N 0 4.879 -0.309 -0.446
71 H261 H 1H26 N N N 0 5.785 1.957 -0.854
72 H262 H 2H26 N N N 0 5.385 2.423 0.818
73 H27 H H27 N N N 0 7.313 0.208 -0.021
74 H292 H 2H29 N N N 0 5.571 -0.991 3.063
75 H281 H 1H28 N N N 0 7.755 -0.008 2.397
76 H282 H 2H28 N N N 0 6.552 1.259 2.744
77 H291 H 1H29 N N N 0 5.99 -1.417 1.386
78 HN3 H HN3 N N N 0 4.162 0.743 2.212
79 H301 H 1H30 N N N 0 9.596 0.832 1.199
80 H302 H 2H30 N N N 0 9.371 1.076 -0.55
81 H311 H 1H31 N N N 0 11.318 2.366 0.285
82 H312 H 2H31 N N N 0 10.037 3.452 -0.305
83 H313 H 3H31 N N N 0 10.262 3.208 1.444