Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : LIC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.099 0.614 0.119
2 C7 C C7 N N N 0 -2.07 -2.458 -0.323
3 C13 C C13 N Y N 0 -4.046 -2.858 -1.806
4 C15 C C15 N Y N 0 -5.792 -2.539 0.316
5 C21 C C21 N Y N 0 -3.064 3.543 -0.032
6 C22 C C22 N Y N 0 -1.981 1.746 1.127
7 C24 C C24 N Y N 0 -2.183 3.393 -1.093
8 CL16 CL CL16 N N N 0 -3.811 -2.087 2.106
9 C12 C C12 N Y N 0 -4.427 -2.43 0.52
10 C11 C C11 N Y N 0 -6.281 -2.813 -0.947
11 C14 C C14 N Y N 0 -5.409 -2.972 -2.008
12 C9 C C9 N Y N 0 -3.555 -2.583 -0.543
13 N5 N N5 N N N 0 -1.718 -1.045 -0.16
14 C1 C C1 N N N 0 -0.435 -0.69 0.049
15 O4 O O4 N N N 0 0.42 -1.545 0.176
16 C2 C C2 N Y N 0 -1.096 1.598 0.068
17 C25 C C25 N Y N 0 -2.963 2.716 1.077
18 O30 O O30 N N N 0 -4.03 4.499 -0.081
19 C31 C C31 N N N 0 -3.878 5.177 -1.329
20 C23 C C23 N Y N 0 -1.198 2.427 -1.041
21 C3 C C3 N Y N 0 1.237 0.982 0.241
22 C35 C C35 N Y N 0 1.584 2.304 0.522
23 C37 C C37 N Y N 0 2.923 2.625 0.634
24 N39 N N39 N Y N 0 3.832 1.675 0.474
25 C41 C C41 N Y N 0 3.474 0.428 0.208
26 N42 N N42 N Y N 0 2.201 0.079 0.098
27 N36 N N36 N N N 0 4.454 -0.536 0.048
28 C43 C C43 S N N 0 5.868 -0.171 0.172
29 C45 C C45 N N N 0 6.276 -0.211 1.646
30 C47 C C47 N N N 0 6.722 -1.163 -0.62
31 C53 C C53 N N N 0 6.313 -1.123 -2.094
32 O52 O O52 N N N 0 6.523 -2.481 -0.106
33 C51 C C51 N N N 0 8.198 -0.782 -0.49
34 H71 H 1H7 N N N 0 -1.539 -2.868 -1.182
35 H72 H 2H7 N N N 0 -1.787 -3.008 0.575
36 H13 H H13 N N N 0 -3.365 -2.982 -2.635
37 H15 H H15 N N N 0 -6.473 -2.414 1.144
38 H22 H H22 N N N 0 -1.902 1.102 1.991
39 H24 H H24 N N N 0 -2.263 4.037 -1.956
40 H11 H H11 N N N 0 -7.346 -2.902 -1.106
41 H14 H H14 N N N 0 -5.792 -3.186 -2.995
42 HN5 H HN5 N N N 0 -2.408 -0.365 -0.204
43 H25 H H25 N N N 0 -3.652 2.83 1.901
44 H311 H 1H31 N N N 0 -3.996 4.464 -2.146
45 H312 H 2H31 N N N 0 -4.635 5.956 -1.414
46 H313 H 3H31 N N N 0 -2.887 5.626 -1.38
47 H23 H H23 N N N 0 -0.51 2.313 -1.865
48 H35 H H35 N N N 0 0.822 3.06 0.648
49 H37 H H37 N N N 0 3.225 3.639 0.85
50 HN36 H HN36 N N N 0 4.205 -1.453 -0.147
51 H43 H H43 N N N 0 6.019 0.834 -0.22
52 H451 H 1H45 N N N 0 6.125 -1.216 2.039
53 H452 H 2H45 N N N 0 7.328 0.061 1.739
54 H453 H 3H45 N N N 0 5.668 0.496 2.211
55 H531 H 1H53 N N N 0 6.465 -0.118 -2.487
56 H532 H 2H53 N N N 0 6.921 -1.83 -2.659
57 H533 H 3H53 N N N 0 5.261 -1.395 -2.187
58 HO52 H HO52 N N N 0 7.078 -3.073 -0.632
59 H511 H 1H51 N N N 0 8.489 -0.81 0.56
60 H512 H 2H51 N N N 0 8.806 -1.488 -1.055
61 H513 H 3H51 N N N 0 8.35 0.224 -0.883