Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LH5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 0.887 2.323 0.161
2 C13 C C2 N Y N 0 -0.33 0.277 -0.14
3 C15 C C3 N Y N 0 -1.524 0.951 0.067
4 C17 C C4 N N N 0 -2.641 -1.122 -0.248
5 C20 C C5 N Y N 0 -4.035 -1.694 -0.261
6 C21 C C6 N Y N 0 -4.763 -1.74 -1.44
7 C28 C C7 N Y N 0 -4.602 -2.184 0.9
8 N01 N N1 N N N 0 -3.917 2.447 0.374
9 C04 C C8 N N N 0 -2.777 3.058 0.534
10 N05 N N2 N N N 0 -2.753 4.384 0.911
11 C07 C C9 N Y N 0 -1.51 2.329 0.312
12 C08 C C10 N Y N 0 -0.292 3.009 0.363
13 C12 C C11 N Y N 0 0.868 0.962 -0.093
14 O16 O O1 N N N 0 -2.703 0.28 0.02
15 C23 C C12 N Y N 0 -6.042 -2.274 -1.405
16 C25 C C13 N Y N 0 -6.545 -2.74 -0.204
17 N27 N N3 N Y N 0 -5.821 -2.685 0.896
18 C30 C C14 S N N 0 2.162 0.223 -0.318
19 C32 C C15 N N N 0 2.755 -0.181 1.029
20 C35 C C16 N Y N 0 4.097 -0.839 0.857
21 C36 C C17 N Y N 0 4.587 -1.686 1.829
22 C38 C C18 N Y N 0 5.824 -2.285 1.667
23 C40 C C19 N Y N 0 6.58 -2.042 0.534
24 C42 C C20 N Y N 0 6.1 -1.196 -0.448
25 C44 C C21 N Y N 0 4.858 -0.597 -0.287
26 B45 B B1 N N N 0 4.27 0.366 -1.387
27 O46 O O2 N N N 0 4.887 0.526 -2.656
28 O48 O O3 N N N 0 3.074 1.071 -1.029
29 H1 H H1 N N N 0 1.829 2.85 0.196
30 H2 H H2 N N N 0 -0.338 -0.784 -0.339
31 H3 H H3 N N N 0 -2.054 -1.615 0.528
32 H4 H H4 N N N 0 -2.171 -1.287 -1.217
33 H5 H H5 N N N 0 -4.345 -1.368 -2.364
34 H6 H H6 N N N 0 -4.039 -2.156 1.822
35 H7 H H7 N N N 0 -3.936 1.531 0.054
36 H8 H H8 N N N 0 -3.584 4.862 1.056
37 H9 H H9 N N N 0 -1.905 4.839 1.03
38 H10 H H10 N N N 0 -0.273 4.07 0.561
39 H11 H H11 N N N 0 -6.638 -2.326 -2.304
40 H12 H H12 N N N 0 -7.54 -3.157 -0.169
41 H13 H H13 N N N 0 1.969 -0.671 -0.91
42 H14 H H14 N N N 0 2.869 0.708 1.65
43 H15 H H15 N N N 0 2.077 -0.876 1.523
44 H16 H H16 N N N 0 4.005 -1.883 2.718
45 H17 H H17 N N N 0 6.203 -2.947 2.431
46 H18 H H18 N N N 0 7.545 -2.512 0.417
47 H19 H H19 N N N 0 6.686 -1.003 -1.334
48 H20 H H20 N N N 0 4.429 1.144 -3.241