Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KHP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O5' N N N 0 -2.311 3.302 0.639
2 C5 C C5B N N N 0 -3.088 2.351 -0.092
3 C4 C C4B S N N 0 -2.77 0.941 0.407
4 O4 O O4' N N N 0 -1.424 0.58 0.059
5 C1 C C1B S N N 0 -1.362 -0.81 -0.283
6 C2 C C2B R N N 0 -2.794 -1.378 -0.184
7 O2 O O2B N N N 0 -3.056 -2.286 -1.255
8 C3 C C3B R N N 0 -3.668 -0.099 -0.309
9 O3 O O3B N N N 0 -4.917 -0.26 0.367
10 O1 O O1' N N N 0 -0.502 -1.495 0.63
11 C1' C C1' N Y N 0 0.753 -1.021 0.417
12 C2' C C2' N Y N 0 1.815 -1.507 1.166
13 C3' C C3' N Y N 0 3.091 -1.024 0.949
14 C4' C C4' N Y N 0 3.31 -0.056 -0.015
15 N1' N N1' N N N 1 4.677 0.461 -0.245
16 O3' O O3' N N N -1 5.609 0.034 0.413
17 O2' O O2' N N N 0 4.871 1.313 -1.093
18 C5' C C5' N Y N 0 2.253 0.43 -0.762
19 C6' C C6' N Y N 0 0.976 -0.054 -0.552
20 HO5 H H5B N N Y 0 -2.542 4.176 0.294
21 H51 H H5'1 N N N 0 -4.148 2.558 0.055
22 H52 H H5'2 N N N 0 -2.848 2.424 -1.153
23 H4 H H4' N N N 0 -2.91 0.881 1.487
24 H1 H H1' N N N 0 -0.989 -0.924 -1.3
25 H2 H H2B N N N 0 -2.954 -1.862 0.78
26 HO2 H H1 N N Y 0 -2.423 -3.012 -1.168
27 H3 H H3B N N N 0 -3.822 0.171 -1.354
28 HO3 H H2 N N Y 0 -5.375 -0.994 -0.064
29 H2' H H2' N N N 0 1.645 -2.262 1.919
30 H3' H H3' N N N 0 3.918 -1.402 1.531
31 H5' H H5' N N N 0 2.427 1.186 -1.514
32 H6' H H6' N N N 0 0.151 0.326 -1.136