data_KHP
#
_chem_comp.id KHP
_chem_comp.name "4-nitrophenyl alpha-L-arabinofuranoside"
_chem_comp.type L-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C11 H13 N O7"
_chem_comp.mon_nstd_parent_comp_id AHR
_chem_comp.pdbx_synonyms
;2-HYDROXYMETHYL-5-(4-NITRO-PHENOXY)-TETRAHYDRO-FURAN-3,4-DIOL; 4-NITROPHENYL-ARA; 4-nitrophenyl alpha-L-arabinoside;
4-nitrophenyl L-arabinoside; 4-nitrophenyl arabinoside
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-09-12
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 271.223
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KHP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1QW9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 KHP 2-HYDROXYMETHYL-5-(4-NITRO-PHENOXY)-TETRAHYDRO-FURAN-3,4-DIOL PDB ?
2 KHP 4-NITROPHENYL-ARA PDB ?
3 KHP "4-nitrophenyl alpha-L-arabinoside" PDB ?
4 KHP "4-nitrophenyl L-arabinoside" PDB ?
5 KHP "4-nitrophenyl arabinoside" PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KHP O5 "O5'" O 0 1 N N N N N N 86.247 24.738 35.532 -2.311 3.302 0.639 O5 KHP 1
KHP C5 C5B C 0 1 N N N N N N 87.510 24.958 35.590 -3.088 2.351 -0.092 C5 KHP 2
KHP C4 C4B C 0 1 N N S N N N 88.008 26.192 36.352 -2.770 0.941 0.407 C4 KHP 3
KHP O4 "O4'" O 0 1 N N N N N N 87.694 26.006 37.733 -1.424 0.580 0.059 O4 KHP 4
KHP C1 C1B C 0 1 N N S N N N 87.769 27.290 38.337 -1.362 -0.810 -0.283 C1 KHP 5
KHP C2 C2B C 0 1 N N R N N N 87.492 28.304 37.235 -2.794 -1.378 -0.184 C2 KHP 6
KHP O2 O2B O 0 1 N N N N N N 86.441 29.217 37.532 -3.056 -2.286 -1.255 O2 KHP 7
KHP C3 C3B C 0 1 N N R N N N 87.324 27.500 35.966 -3.668 -0.099 -0.309 C3 KHP 8
KHP O3 O3B O 0 1 N N N N N N 87.917 28.169 34.889 -4.917 -0.260 0.367 O3 KHP 9
KHP O1 "O1'" O 0 1 N N N N N N 89.110 27.585 38.797 -0.502 -1.495 0.630 O1 KHP 10
KHP "C1'" "C1'" C 0 1 Y N N N N N 89.583 26.874 39.958 0.753 -1.021 0.417 "C1'" KHP 11
KHP "C2'" "C2'" C 0 1 Y N N N N N 90.869 26.476 39.927 1.815 -1.507 1.166 "C2'" KHP 12
KHP "C3'" "C3'" C 0 1 Y N N N N N 91.387 25.800 40.966 3.091 -1.024 0.949 "C3'" KHP 13
KHP "C4'" "C4'" C 0 1 Y N N N N N 90.630 25.519 42.038 3.310 -0.056 -0.015 "C4'" KHP 14
KHP "N1'" "N1'" N 1 1 N N N N N N 91.167 24.848 43.068 4.677 0.461 -0.245 "N1'" KHP 15
KHP "O3'" "O3'" O -1 1 N N N N N N 90.495 24.577 44.056 5.609 0.034 0.413 "O3'" KHP 16
KHP "O2'" "O2'" O 0 1 N N N N N N 92.339 24.493 43.022 4.871 1.313 -1.093 "O2'" KHP 17
KHP "C5'" "C5'" C 0 1 Y N N N N N 89.344 25.912 42.071 2.253 0.430 -0.762 "C5'" KHP 18
KHP "C6'" "C6'" C 0 1 Y N N N N N 88.822 26.587 41.026 0.976 -0.054 -0.552 "C6'" KHP 19
KHP HO5 H5B H 0 1 N Y N N N N 85.939 23.974 35.060 -2.542 4.176 0.294 HO5 KHP 20
KHP H51 "H5'1" H 0 1 N N N N N N 87.920 24.984 34.553 -4.148 2.558 0.055 H51 KHP 21
KHP H52 "H5'2" H 0 1 N N N N N N 88.016 24.053 35.999 -2.848 2.424 -1.153 H52 KHP 22
KHP H4 "H4'" H 0 1 N N N N N N 89.094 26.277 36.115 -2.910 0.881 1.487 H4 KHP 23
KHP H1 "H1'" H 0 1 N N N N N N 87.056 27.325 39.194 -0.989 -0.924 -1.300 H1 KHP 24
KHP H2 H2B H 0 1 N N N N N N 88.344 29.014 37.117 -2.954 -1.862 0.780 H2 KHP 25
KHP HO2 H1 H 0 1 N Y N N N N 86.268 29.850 36.845 -2.423 -3.012 -1.168 HO2 KHP 26
KHP H3 H3B H 0 1 N N N N N N 86.276 27.337 35.622 -3.822 0.171 -1.354 H3 KHP 27
KHP HO3 H2 H 0 1 N Y N N N N 87.491 28.984 34.649 -5.375 -0.994 -0.064 HO3 KHP 28
KHP "H2'" "H2'" H 0 1 N N N N N N 91.498 26.704 39.050 1.645 -2.262 1.919 "H2'" KHP 29
KHP "H3'" "H3'" H 0 1 N N N N N N 92.440 25.474 40.939 3.918 -1.402 1.531 "H3'" KHP 30
KHP "H5'" "H5'" H 0 1 N N N N N N 88.720 25.682 42.951 2.427 1.186 -1.514 "H5'" KHP 31
KHP "H6'" "H6'" H 0 1 N N N N N N 87.766 26.906 41.045 0.151 0.326 -1.136 "H6'" KHP 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KHP O5 C5 SING N N 1
KHP O5 HO5 SING N N 2
KHP C5 C4 SING N N 3
KHP C5 H51 SING N N 4
KHP C5 H52 SING N N 5
KHP C4 O4 SING N N 6
KHP C4 C3 SING N N 7
KHP C4 H4 SING N N 8
KHP O4 C1 SING N N 9
KHP C1 C2 SING N N 10
KHP C1 O1 SING N N 11
KHP C1 H1 SING N N 12
KHP C2 O2 SING N N 13
KHP C2 C3 SING N N 14
KHP C2 H2 SING N N 15
KHP O2 HO2 SING N N 16
KHP C3 O3 SING N N 17
KHP C3 H3 SING N N 18
KHP O3 HO3 SING N N 19
KHP O1 "C1'" SING N N 20
KHP "C1'" "C2'" DOUB Y N 21
KHP "C1'" "C6'" SING Y N 22
KHP "C2'" "C3'" SING Y N 23
KHP "C2'" "H2'" SING N N 24
KHP "C3'" "C4'" DOUB Y N 25
KHP "C3'" "H3'" SING N N 26
KHP "C4'" "N1'" SING N N 27
KHP "C4'" "C5'" SING Y N 28
KHP "N1'" "O3'" SING N N 29
KHP "N1'" "O2'" DOUB N N 30
KHP "C5'" "C6'" DOUB Y N 31
KHP "C5'" "H5'" SING N N 32
KHP "C6'" "H6'" SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KHP SMILES ACDLabs 10.04 "[O-][N+](=O)c2ccc(OC1OC(C(O)C1O)CO)cc2"
KHP SMILES_CANONICAL CACTVS 3.341 OC[C@@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@H](O)[C@H]1O
KHP SMILES CACTVS 3.341 OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH]1O
KHP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@@H](O2)CO)O)O
KHP SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1[N+](=O)[O-])OC2C(C(C(O2)CO)O)O
KHP InChI InChI 1.03 InChI=1S/C11H13NO7/c13-5-8-9(14)10(15)11(19-8)18-7-3-1-6(2-4-7)12(16)17/h1-4,8-11,13-15H,5H2/t8-,9-,10+,11+/m0/s1
KHP InChIKey InChI 1.03 DUYYBTBDYZXISX-UKKRHICBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KHP "SYSTEMATIC NAME" ACDLabs 10.04 "4-nitrophenyl alpha-L-arabinofuranoside"
KHP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R,4R,5S)-2-(hydroxymethyl)-5-(4-nitrophenoxy)oxolane-3,4-diol
KHP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 4-nitrophenyl-Ara
#
_pdbx_chem_comp_related.comp_id KHP
_pdbx_chem_comp_related.related_comp_id AHR
_pdbx_chem_comp_related.relationship_type "Carbohydrate core"
_pdbx_chem_comp_related.details ?
#
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 KHP C1 AHR C1 "Carbohydrate core"
2 KHP C2 AHR C2 "Carbohydrate core"
3 KHP C3 AHR C3 "Carbohydrate core"
4 KHP C4 AHR C4 "Carbohydrate core"
5 KHP C5 AHR C5 "Carbohydrate core"
6 KHP O1 AHR O1 "Carbohydrate core"
7 KHP O2 AHR O2 "Carbohydrate core"
8 KHP O3 AHR O3 "Carbohydrate core"
9 KHP O4 AHR O4 "Carbohydrate core"
10 KHP O5 AHR O5 "Carbohydrate core"
11 KHP HO2 AHR HO2 "Carbohydrate core"
12 KHP H1 AHR H1 "Carbohydrate core"
13 KHP HO3 AHR HO3 "Carbohydrate core"
14 KHP H2 AHR H2 "Carbohydrate core"
15 KHP H3 AHR H3 "Carbohydrate core"
16 KHP H4 AHR H4 "Carbohydrate core"
17 KHP H51 AHR H51 "Carbohydrate core"
18 KHP H52 AHR H52 "Carbohydrate core"
19 KHP HO5 AHR HO5 "Carbohydrate core"
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
KHP "CARBOHYDRATE ISOMER" L PDB ?
KHP "CARBOHYDRATE RING" furanose PDB ?
KHP "CARBOHYDRATE ANOMER" alpha PDB ?
KHP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KHP 'Create component' 2003-09-12 RCSB
KHP 'Modify descriptor' 2011-06-04 RCSB
KHP 'Other modification' 2020-07-03 RCSB
KHP 'Modify parent residue' 2020-07-17 RCSB
KHP 'Modify name' 2020-07-17 RCSB
KHP 'Modify synonyms' 2020-07-17 RCSB
KHP 'Modify internal type' 2020-07-17 RCSB
KHP 'Modify linking type' 2020-07-17 RCSB
KHP 'Modify atom id' 2020-07-17 RCSB
KHP 'Modify component atom id' 2020-07-17 RCSB
KHP 'Modify leaving atom flag' 2020-07-17 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id KHP
_pdbe_chem_comp_drugbank_details.drugbank_id DB03196
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-Nitrophenyl-Ara
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
KHP 2-HYDROXYMETHYL-5-(4-NITRO-PHENOXY)-TETRAHYDRO-FURAN-3,4-DIOL wwPDB ?
KHP 4-NITROPHENYL-ARA wwPDB ?
KHP '4-nitrophenyl alpha-L-arabinoside' wwPDB ?
KHP '4-nitrophenyl L-arabinoside' wwPDB ?
KHP '4-nitrophenyl arabinoside' wwPDB ?
KHP 4-Nitrophenyl-Ara DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id KHP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03196
_pdbe_chem_comp_drugbank_classification.parent 'Phenolic glycosides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.'
#
_pdbe_chem_comp_drugbank_targets.comp_id KHP
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03196
_pdbe_chem_comp_drugbank_targets.name 'Intracellular exo-alpha-(1->5)-L-arabinofuranosidase'
_pdbe_chem_comp_drugbank_targets.organism 'Geobacillus stearothermophilus'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q9XBQ3
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KHP O5 O 3.884 0.007 1
KHP C5 C 4.196 -1.460 2
KHP C4 C 5.623 -1.923 3
KHP O4 O 6.836 -1.041 4
KHP C1 C 8.050 -1.923 5
KHP C2 C 7.586 -3.350 6
KHP O2 O 8.468 -4.563 7
KHP C3 C 6.086 -3.350 8
KHP O3 O 5.205 -4.563 9
KHP O1 O 9.476 -1.460 10
KHP "C1'" C 9.788 0.007 11
KHP "C2'" C 11.215 0.471 12
KHP "C3'" C 11.527 1.938 13
KHP "C4'" C 10.412 2.942 14
KHP "N1'" N 10.724 4.409 15
KHP "O3'" O 12.151 4.873 16
KHP "O2'" O 9.609 5.413 17
KHP "C5'" C 8.986 2.478 18
KHP "C6'" C 8.674 1.011 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KHP O5 C5 SINGLE NONE 1
KHP C4 C5 SINGLE BEGINDASH 2
KHP C4 O4 SINGLE NONE 3
KHP C4 C3 SINGLE NONE 4
KHP O4 C1 SINGLE NONE 5
KHP C1 C2 SINGLE NONE 6
KHP C1 O1 SINGLE BEGINWEDGE 7
KHP C2 O2 SINGLE BEGINDASH 8
KHP C2 C3 SINGLE NONE 9
KHP C3 O3 SINGLE BEGINWEDGE 10
KHP O1 "C1'" SINGLE NONE 11
KHP "C1'" "C2'" DOUBLE NONE 12
KHP "C1'" "C6'" SINGLE NONE 13
KHP "C2'" "C3'" SINGLE NONE 14
KHP "C3'" "C4'" DOUBLE NONE 15
KHP "C4'" "N1'" SINGLE NONE 16
KHP "C4'" "C5'" SINGLE NONE 17
KHP "N1'" "O3'" SINGLE NONE 18
KHP "N1'" "O2'" DOUBLE NONE 19
KHP "C5'" "C6'" DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KHP MurckoScaffold S1 scaffold 'c1ccc(O[C@H]2CCCO2)cc1' InChI=1S/C10H12O2/c1-2-5-9(6-3-1)12-10-7-4-8-11-10/h1-3,5-6,10H,4,7-8H2/t10-/m0/s1 PBCTYXBHPFCNBB-JTQLQIEISA-N
KHP furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
KHP phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KHP ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KHP C4 S1 1
KHP O4 S1 1
KHP C1 S1 1
KHP C2 S1 1
KHP C3 S1 1
KHP O1 S1 1
KHP "C1'" S1 1
KHP "C2'" S1 1
KHP "C3'" S1 1
KHP "C4'" S1 1
KHP "C5'" S1 1
KHP "C6'" S1 1
KHP C3 F1 1
KHP C4 F1 1
KHP O4 F1 1
KHP C1 F1 1
KHP C2 F1 1
KHP O1 F1 1
KHP "C1'" F2 1
KHP "C2'" F2 1
KHP "C3'" F2 1
KHP "C4'" F2 1
KHP "C5'" F2 1
KHP "C6'" F2 1
KHP C2 F3 1
KHP C3 F3 1
KHP C4 F3 1
KHP O4 F3 1
KHP C1 F3 1
KHP C5 F3 1
KHP O5 F3 1
KHP O3 F3 1
KHP O2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KHP
_pdbe_chem_comp_rdkit_properties.exactmw 271.069
_pdbe_chem_comp_rdkit_properties.amw 271.225
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.455
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 126.038
_pdbe_chem_comp_rdkit_properties.tpsa 122.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.430
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.051
_pdbe_chem_comp_rdkit_properties.chi0v 8.805
_pdbe_chem_comp_rdkit_properties.chi1v 4.518
_pdbe_chem_comp_rdkit_properties.chi2v 1.852
_pdbe_chem_comp_rdkit_properties.chi3v 1.852
_pdbe_chem_comp_rdkit_properties.chi4v 1.045
_pdbe_chem_comp_rdkit_properties.chi0n 21.805
_pdbe_chem_comp_rdkit_properties.chi1n 10.742
_pdbe_chem_comp_rdkit_properties.chi2n 1.852
_pdbe_chem_comp_rdkit_properties.chi3n 1.852
_pdbe_chem_comp_rdkit_properties.chi4n 1.045
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.740
_pdbe_chem_comp_rdkit_properties.kappa1 4.670
_pdbe_chem_comp_rdkit_properties.kappa2 5.491
_pdbe_chem_comp_rdkit_properties.kappa3 2.817
_pdbe_chem_comp_rdkit_properties.Phi 1.350
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KHP UniChem DrugBank DB03196
KHP UniChem ZINC ZINC000006093332
KHP UniChem 'PubChem TPHARMA' 16473971
KHP UniChem BRENDA 1152
KHP UniChem BRENDA 2174
KHP UniChem BRENDA 596
KHP UniChem BRENDA 7821
KHP UniChem BRENDA 9457
KHP UniChem 'Probes And Drugs' PD007731
KHP UniChem ChemicalBook CB3135882
KHP UniChem eMolecules 31259884
KHP UniChem eMolecules 6758406
KHP UniChem SureChEMBL SCHEMBL154484
KHP UniChem PubChem 151437
KHP UniChem ACTor 6892-58-6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KHP O5 5.005 0.645 1.639 ETKDGv3 1
KHP C5 4.254 -0.456 1.202 ETKDGv3 2
KHP C4 2.784 -0.065 1.005 ETKDGv3 3
KHP O4 2.030 -1.209 0.686 ETKDGv3 4
KHP C1 0.903 -0.774 -0.042 ETKDGv3 5
KHP C2 1.192 0.627 -0.606 ETKDGv3 6
KHP O2 1.106 0.667 -2.011 ETKDGv3 7
KHP C3 2.592 0.942 -0.121 ETKDGv3 8
KHP O3 2.682 2.255 0.368 ETKDGv3 9
KHP O1 -0.226 -0.750 0.836 ETKDGv3 10
KHP "C1'" -1.568 -0.598 0.447 ETKDGv3 11
KHP "C2'" -1.955 -0.530 -0.842 ETKDGv3 12
KHP "C3'" -3.383 -0.367 -1.185 ETKDGv3 13
KHP "C4'" -4.316 -0.287 -0.217 ETKDGv3 14
KHP "N1'" -5.710 -0.129 -0.539 ETKDGv3 15
KHP "O3'" -6.648 -0.050 0.465 ETKDGv3 16
KHP "O2'" -6.092 -0.060 -1.726 ETKDGv3 17
KHP "C5'" -3.885 -0.367 1.202 ETKDGv3 18
KHP "C6'" -2.591 -0.513 1.510 ETKDGv3 19
KHP HO5 5.295 1.135 0.826 ETKDGv3 20
KHP H51 4.311 -1.246 1.981 ETKDGv3 21
KHP H52 4.678 -0.884 0.264 ETKDGv3 22
KHP H4 2.396 0.355 1.963 ETKDGv3 23
KHP H1 0.724 -1.512 -0.854 ETKDGv3 24
KHP H2 0.468 1.363 -0.188 ETKDGv3 25
KHP HO2 1.715 -0.027 -2.376 ETKDGv3 26
KHP H3 3.344 0.772 -0.927 ETKDGv3 27
KHP HO3 2.701 2.849 -0.427 ETKDGv3 28
KHP "H2'" -1.243 -0.594 -1.651 ETKDGv3 29
KHP "H3'" -3.659 -0.314 -2.230 ETKDGv3 30
KHP "H5'" -4.615 -0.307 1.999 ETKDGv3 31
KHP "H6'" -2.289 -0.570 2.549 ETKDGv3 32
#