Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : JCM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.968 -1.717 0.452
2 N3 N N2 N N N 0 -9.602 2.841 0.234
3 C4 C C1 N Y N 0 1.871 -2.352 -0.137
4 C5 C C2 N Y N 0 0.586 -1.897 0.118
5 C6 C C3 N Y N 0 -0.503 -2.533 -0.472
6 C7 C C4 N Y N 0 -1.881 -2.051 -0.204
7 C8 C C5 N Y N 0 -2.088 -0.957 0.634
8 C10 C C6 N Y N 0 -4.451 -1.151 0.297
9 C13 C C7 N N N 0 -7.661 1.601 1.064
10 C15 C C8 N N N 0 -10.965 3.318 0.499
11 C17 C C9 N N N 0 -8.091 1.697 -1.316
12 C20 C C10 N Y N 0 -0.297 -3.623 -1.315
13 C21 C C11 N Y N 0 0.986 -4.071 -1.564
14 C22 C C12 N Y N 0 2.068 -3.437 -0.984
15 C1 C C16 N N N 0 3.336 -1.989 4.213
16 C24 C C13 N Y N 0 3.551 -0.623 -0.168
17 C26 C C14 N Y N 0 6.144 1.908 -0.046
18 C28 C C15 N Y N 0 8.23 3.423 0.696
19 C2 C C17 N N N 0 2.875 -1.404 2.876
20 C3 C C18 N N N 0 3.497 -2.203 1.729
21 C9 C C19 N Y N 0 -3.372 -0.513 0.88
22 C11 C C20 N N N 0 -5.85 -0.662 0.569
23 C12 C C21 N N N 0 -6.234 0.39 -0.473
24 N2 N N3 N N N 0 -7.598 0.867 -0.208
25 C14 C C22 N N N 0 -9.109 2.011 1.342
26 C16 C C23 N N N 0 -9.539 2.107 -1.038
27 C18 C C24 N Y N 0 -4.251 -2.234 -0.54
28 C19 C C25 N Y N 0 -2.971 -2.687 -0.793
29 C23 C C26 N N N 0 3.465 -3.931 -1.26
30 N4 N N4 N Y N 0 4.568 0.04 0.286
31 C25 C C27 N Y N 0 4.994 1.067 -0.449
32 N5 N N5 N Y N 0 6.779 1.635 1.087
33 C27 C C28 N Y N 0 7.812 2.365 1.48
34 C29 C C29 N Y N 0 7.546 3.683 -0.494
35 N6 N N6 N N N 0 7.935 4.73 -1.314
36 N7 N N7 N Y N 0 6.518 2.912 -0.829
37 C30 C C30 N Y N 0 4.304 1.286 -1.584
38 S1 S S1 N Y N 0 3.03 0.074 -1.699
39 H2 H H2 N N N 0 0.431 -1.052 0.772
40 H3 H H3 N N N 0 -1.246 -0.458 1.09
41 H4 H H4 N N N 0 -7.303 0.962 1.871
42 H5 H H5 N N N 0 -7.036 2.492 1.001
43 H6 H H6 N N N 0 -10.97 3.915 1.411
44 H7 H H7 N N N 0 -11.306 3.93 -0.337
45 H8 H H8 N N N 0 -11.632 2.464 0.62
46 H9 H H9 N N N 0 -7.471 2.589 -1.406
47 H10 H H10 N N N 0 -8.046 1.127 -2.244
48 H11 H H11 N N N 0 -1.14 -4.119 -1.773
49 H12 H H12 N N N 0 1.144 -4.913 -2.221
50 H13 H H13 N N N 0 9.07 4.033 0.995
51 H17 H H17 N N N 0 1.789 -1.46 2.811
52 H14 H H14 N N N 0 4.423 -1.933 4.278
53 H15 H H15 N N N 0 2.893 -1.419 5.03
54 H16 H H16 N N N 0 3.02 -3.03 4.282
55 H18 H H18 N N N 0 3.191 -0.363 2.807
56 H19 H H19 N N N 0 3.25 -3.259 1.846
57 H20 H H20 N N N 0 4.58 -2.079 1.744
58 H21 H H21 N N N 0 -3.533 0.335 1.53
59 H22 H H22 N N N 0 -6.545 -1.499 0.514
60 H23 H H23 N N N 0 -5.893 -0.219 1.564
61 H24 H H24 N N N 0 -5.539 1.227 -0.418
62 H25 H H25 N N N 0 -6.192 -0.053 -1.469
63 H27 H H27 N N N 0 -9.153 2.581 2.27
64 H28 H H28 N N N 0 -9.729 1.119 1.432
65 H29 H H29 N N N 0 -10.163 1.216 -0.975
66 H30 H H30 N N N 0 -9.897 2.747 -1.845
67 H31 H H31 N N N 0 -5.097 -2.727 -0.997
68 H32 H H32 N N N 0 -2.816 -3.532 -1.447
69 H33 H H33 N N N 0 3.902 -3.348 -2.071
70 H34 H H34 N N N 0 4.074 -3.819 -0.363
71 H35 H H35 N N N 0 3.429 -4.982 -1.546
72 H36 H H36 N N N 0 8.322 2.135 2.404
73 H37 H H37 N N N 0 7.456 4.905 -2.138
74 H38 H H38 N N N 0 8.687 5.289 -1.062
75 H39 H H39 N N N 0 4.5 2.068 -2.303