data_JCM
#
_chem_comp.id JCM
_chem_comp.name
4-(4-azanylpyrimidin-2-yl)-N-[2-methyl-5-[4-[2-(4-methylpiperazin-1-yl)ethyl]phenyl]phenyl]-N-propyl-1,3-thiazol-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H37 N7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-04-25
_chem_comp.pdbx_modified_date 2023-06-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.727
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JCM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZI7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JCM N1 N1 N 0 1 N N N N N N -12.740 -32.427 10.267 2.968 -1.717 0.452 N1 JCM 1
JCM N3 N2 N 0 1 N N N N N N -10.125 -44.220 17.412 -9.602 2.841 0.234 N3 JCM 2
JCM C4 C1 C 0 1 Y N N N N N -12.350 -33.778 10.004 1.871 -2.352 -0.137 C4 JCM 3
JCM C5 C2 C 0 1 Y N N N N N -11.992 -34.609 11.061 0.586 -1.897 0.118 C5 JCM 4
JCM C6 C3 C 0 1 Y N N N N N -11.593 -35.921 10.820 -0.503 -2.533 -0.472 C6 JCM 5
JCM C7 C4 C 0 1 Y N N N N N -11.233 -36.811 11.959 -1.881 -2.051 -0.204 C7 JCM 6
JCM C8 C5 C 0 1 Y N N N N N -12.080 -36.964 13.051 -2.088 -0.957 0.634 C8 JCM 7
JCM C10 C6 C 0 1 Y N N N N N -10.545 -38.486 14.126 -4.451 -1.151 0.297 C10 JCM 8
JCM C13 C7 C 0 1 N N N N N N -10.177 -41.766 17.231 -7.661 1.601 1.064 C13 JCM 9
JCM C15 C8 C 0 1 N N N N N N -9.374 -45.388 17.882 -10.965 3.318 0.499 C15 JCM 10
JCM C17 C9 C 0 1 N N N N N N -11.109 -43.075 15.474 -8.091 1.697 -1.316 C17 JCM 11
JCM C20 C10 C 0 1 Y N N N N N -11.552 -36.362 9.500 -0.297 -3.623 -1.315 C20 JCM 12
JCM C21 C11 C 0 1 Y N N N N N -11.894 -35.531 8.448 0.986 -4.071 -1.564 C21 JCM 13
JCM C22 C12 C 0 1 Y N N N N N -12.291 -34.214 8.684 2.068 -3.437 -0.984 C22 JCM 14
JCM C24 C13 C 0 1 Y N N N N N -11.806 -31.473 10.307 3.551 -0.623 -0.168 C24 JCM 15
JCM C26 C14 C 0 1 Y N N N N N -11.029 -27.992 10.006 6.144 1.908 -0.046 C26 JCM 16
JCM C28 C15 C 0 1 Y N N N N N -11.215 -25.305 9.820 8.230 3.423 0.696 C28 JCM 17
JCM C1 C16 C 0 1 N N N N N N -16.280 -31.897 11.685 3.336 -1.989 4.213 C1 JCM 18
JCM C2 C17 C 0 1 N N N N N N -14.771 -32.140 11.702 2.875 -1.404 2.876 C2 JCM 19
JCM C3 C18 C 0 1 N N N N N N -14.189 -32.139 10.310 3.497 -2.203 1.729 C3 JCM 20
JCM C9 C19 C 0 1 Y N N N N N -11.744 -37.797 14.108 -3.372 -0.513 0.880 C9 JCM 21
JCM C11 C20 C 0 1 N N N N N N -10.192 -39.396 15.275 -5.850 -0.662 0.569 C11 JCM 22
JCM C12 C21 C 0 1 N N N N N N -11.040 -40.658 15.238 -6.234 0.390 -0.473 C12 JCM 23
JCM N2 N3 N 0 1 N N N N N N -10.358 -41.843 15.772 -7.598 0.867 -0.208 N2 JCM 24
JCM C14 C22 C 0 1 N N N N N N -9.428 -42.977 17.740 -9.109 2.011 1.342 C14 JCM 25
JCM C16 C23 C 0 1 N N N N N N -10.366 -44.294 15.973 -9.539 2.107 -1.038 C16 JCM 26
JCM C18 C24 C 0 1 Y N N N N N -9.691 -38.330 13.042 -4.251 -2.234 -0.540 C18 JCM 27
JCM C19 C25 C 0 1 Y N N N N N -10.026 -37.505 11.977 -2.971 -2.687 -0.793 C19 JCM 28
JCM C23 C26 C 0 1 N N N N N N -12.617 -33.317 7.557 3.465 -3.931 -1.260 C23 JCM 29
JCM N4 N4 N 0 1 Y N N N N N -12.099 -30.211 10.166 4.568 0.040 0.286 N4 JCM 30
JCM C25 C27 C 0 1 Y N N N N N -10.936 -29.442 10.120 4.994 1.067 -0.449 C25 JCM 31
JCM N5 N5 N 0 1 Y N N N N N -12.234 -27.425 10.154 6.779 1.635 1.087 N5 JCM 32
JCM C27 C28 C 0 1 Y N N N N N -12.320 -26.095 10.040 7.812 2.365 1.480 C27 JCM 33
JCM C29 C29 C 0 1 Y N N N N N -9.995 -25.965 9.675 7.546 3.683 -0.494 C29 JCM 34
JCM N6 N6 N 0 1 N N N N N N -8.867 -25.292 9.432 7.935 4.730 -1.314 N6 JCM 35
JCM N7 N7 N 0 1 Y N N N N N -9.918 -27.297 9.760 6.518 2.912 -0.829 N7 JCM 36
JCM C30 C30 C 0 1 Y N N N N N -9.786 -30.159 10.295 4.304 1.286 -1.584 C30 JCM 37
JCM S1 S1 S 0 1 Y N N N N N -10.117 -31.853 10.358 3.030 0.074 -1.699 S1 JCM 38
JCM H2 H2 H 0 1 N N N N N N -12.024 -34.234 12.073 0.431 -1.052 0.772 H2 JCM 39
JCM H3 H3 H 0 1 N N N N N N -13.016 -36.425 13.077 -1.246 -0.458 1.090 H3 JCM 40
JCM H4 H4 H 0 1 N N N N N N -9.606 -40.858 17.477 -7.303 0.962 1.871 H4 JCM 41
JCM H5 H5 H 0 1 N N N N N N -11.163 -41.721 17.716 -7.036 2.492 1.001 H5 JCM 42
JCM H6 H6 H 0 1 N N N N N N -9.207 -45.306 18.966 -10.970 3.915 1.411 H6 JCM 43
JCM H7 H7 H 0 1 N N N N N N -9.947 -46.302 17.668 -11.306 3.930 -0.337 H7 JCM 44
JCM H8 H8 H 0 1 N N N N N N -8.404 -45.433 17.365 -11.632 2.464 0.620 H8 JCM 45
JCM H9 H9 H 0 1 N N N N N N -12.092 -43.026 15.966 -7.471 2.589 -1.406 H9 JCM 46
JCM H10 H10 H 0 1 N N N N N N -11.248 -43.158 14.386 -8.046 1.127 -2.244 H10 JCM 47
JCM H11 H11 H 0 1 N N N N N N -11.246 -37.377 9.292 -1.140 -4.119 -1.773 H11 JCM 48
JCM H12 H12 H 0 1 N N N N N N -11.853 -35.905 7.436 1.144 -4.913 -2.221 H12 JCM 49
JCM H13 H13 H 0 1 N N N N N N -11.289 -24.229 9.763 9.070 4.033 0.995 H13 JCM 50
JCM H14 H14 H 0 1 N N N N N N -16.665 -31.905 12.715 4.423 -1.933 4.278 H14 JCM 51
JCM H15 H15 H 0 1 N N N N N N -16.489 -30.921 11.223 2.893 -1.419 5.030 H15 JCM 52
JCM H16 H16 H 0 1 N N N N N N -16.772 -32.690 11.104 3.020 -3.030 4.282 H16 JCM 53
JCM H17 H17 H 0 1 N N N N N N -14.572 -33.115 12.171 1.789 -1.460 2.811 H17 JCM 54
JCM H18 H18 H 0 1 N N N N N N -14.289 -31.345 12.290 3.191 -0.363 2.807 H18 JCM 55
JCM H19 H19 H 0 1 N N N N N N -14.359 -31.148 9.864 3.250 -3.259 1.846 H19 JCM 56
JCM H20 H20 H 0 1 N N N N N N -14.712 -32.903 9.715 4.580 -2.079 1.744 H20 JCM 57
JCM H21 H21 H 0 1 N N N N N N -12.432 -37.910 14.933 -3.533 0.335 1.530 H21 JCM 58
JCM H22 H22 H 0 1 N N N N N N -9.130 -39.672 15.204 -6.545 -1.499 0.514 H22 JCM 59
JCM H23 H23 H 0 1 N N N N N N -10.371 -38.868 16.223 -5.893 -0.219 1.564 H23 JCM 60
JCM H24 H24 H 0 1 N N N N N N -11.949 -40.483 15.832 -5.539 1.227 -0.418 H24 JCM 61
JCM H25 H25 H 0 1 N N N N N N -11.318 -40.859 14.193 -6.192 -0.053 -1.469 H25 JCM 62
JCM H27 H27 H 0 1 N N N N N N -8.428 -42.997 17.281 -9.153 2.581 2.270 H27 JCM 63
JCM H28 H28 H 0 1 N N N N N N -9.329 -42.902 18.833 -9.729 1.119 1.432 H28 JCM 64
JCM H29 H29 H 0 1 N N N N N N -10.964 -45.191 15.756 -10.163 1.216 -0.975 H29 JCM 65
JCM H30 H30 H 0 1 N N N N N N -9.400 -44.362 15.451 -9.897 2.747 -1.845 H30 JCM 66
JCM H31 H31 H 0 1 N N N N N N -8.750 -38.860 13.027 -5.097 -2.727 -0.997 H31 JCM 67
JCM H32 H32 H 0 1 N N N N N N -9.340 -37.400 11.150 -2.816 -3.532 -1.447 H32 JCM 68
JCM H33 H33 H 0 1 N N N N N N -13.689 -33.394 7.324 3.902 -3.348 -2.071 H33 JCM 69
JCM H34 H34 H 0 1 N N N N N N -12.376 -32.280 7.832 4.074 -3.819 -0.363 H34 JCM 70
JCM H35 H35 H 0 1 N N N N N N -12.029 -33.609 6.674 3.429 -4.982 -1.546 H35 JCM 71
JCM H36 H36 H 0 1 N N N N N N -13.289 -25.626 10.123 8.322 2.135 2.404 H36 JCM 72
JCM H37 H37 H 0 1 N N N N N N -8.106 -25.935 9.349 7.456 4.905 -2.138 H37 JCM 73
JCM H38 H38 H 0 1 N N N N N N -8.963 -24.777 8.580 8.687 5.289 -1.062 H38 JCM 74
JCM H39 H39 H 0 1 N N N N N N -8.801 -29.724 10.382 4.500 2.068 -2.303 H39 JCM 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JCM C23 C22 SING N N 1
JCM C21 C22 DOUB Y N 2
JCM C21 C20 SING Y N 3
JCM C22 C4 SING Y N 4
JCM N6 C29 SING N N 5
JCM C20 C6 DOUB Y N 6
JCM C29 N7 DOUB Y N 7
JCM C29 C28 SING Y N 8
JCM N7 C26 SING Y N 9
JCM C28 C27 DOUB Y N 10
JCM C4 N1 SING N N 11
JCM C4 C5 DOUB Y N 12
JCM C26 C25 SING N N 13
JCM C26 N5 DOUB Y N 14
JCM C27 N5 SING Y N 15
JCM C25 N4 SING Y N 16
JCM C25 C30 DOUB Y N 17
JCM N4 C24 DOUB Y N 18
JCM N1 C24 SING N N 19
JCM N1 C3 SING N N 20
JCM C30 S1 SING Y N 21
JCM C24 S1 SING Y N 22
JCM C3 C2 SING N N 23
JCM C6 C5 SING Y N 24
JCM C6 C7 SING N N 25
JCM C1 C2 SING N N 26
JCM C7 C19 DOUB Y N 27
JCM C7 C8 SING Y N 28
JCM C19 C18 SING Y N 29
JCM C18 C10 DOUB Y N 30
JCM C8 C9 DOUB Y N 31
JCM C9 C10 SING Y N 32
JCM C10 C11 SING N N 33
JCM C12 C11 SING N N 34
JCM C12 N2 SING N N 35
JCM C17 N2 SING N N 36
JCM C17 C16 SING N N 37
JCM N2 C13 SING N N 38
JCM C16 N3 SING N N 39
JCM C13 C14 SING N N 40
JCM N3 C14 SING N N 41
JCM N3 C15 SING N N 42
JCM C5 H2 SING N N 43
JCM C8 H3 SING N N 44
JCM C13 H4 SING N N 45
JCM C13 H5 SING N N 46
JCM C15 H6 SING N N 47
JCM C15 H7 SING N N 48
JCM C15 H8 SING N N 49
JCM C17 H9 SING N N 50
JCM C17 H10 SING N N 51
JCM C20 H11 SING N N 52
JCM C21 H12 SING N N 53
JCM C28 H13 SING N N 54
JCM C1 H14 SING N N 55
JCM C1 H15 SING N N 56
JCM C1 H16 SING N N 57
JCM C2 H17 SING N N 58
JCM C2 H18 SING N N 59
JCM C3 H19 SING N N 60
JCM C3 H20 SING N N 61
JCM C9 H21 SING N N 62
JCM C11 H22 SING N N 63
JCM C11 H23 SING N N 64
JCM C12 H24 SING N N 65
JCM C12 H25 SING N N 66
JCM C14 H27 SING N N 67
JCM C14 H28 SING N N 68
JCM C16 H29 SING N N 69
JCM C16 H30 SING N N 70
JCM C18 H31 SING N N 71
JCM C19 H32 SING N N 72
JCM C23 H33 SING N N 73
JCM C23 H34 SING N N 74
JCM C23 H35 SING N N 75
JCM C27 H36 SING N N 76
JCM N6 H37 SING N N 77
JCM N6 H38 SING N N 78
JCM C30 H39 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JCM InChI InChI 1.06 InChI=1S/C30H37N7S/c1-4-14-37(30-33-26(21-38-30)29-32-13-11-28(31)34-29)27-20-25(8-5-22(27)2)24-9-6-23(7-10-24)12-15-36-18-16-35(3)17-19-36/h5-11,13,20-21H,4,12,14-19H2,1-3H3,(H2,31,32,34)
JCM InChIKey InChI 1.06 QNERPEQPKFYEGH-UHFFFAOYSA-N
JCM SMILES_CANONICAL CACTVS 3.385 CCCN(c1scc(n1)c2nccc(N)n2)c3cc(ccc3C)c4ccc(CCN5CCN(C)CC5)cc4
JCM SMILES CACTVS 3.385 CCCN(c1scc(n1)c2nccc(N)n2)c3cc(ccc3C)c4ccc(CCN5CCN(C)CC5)cc4
JCM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCN(c1cc(ccc1C)c2ccc(cc2)CCN3CCN(CC3)C)c4nc(cs4)c5nccc(n5)N
JCM SMILES "OpenEye OEToolkits" 2.0.7 CCCN(c1cc(ccc1C)c2ccc(cc2)CCN3CCN(CC3)C)c4nc(cs4)c5nccc(n5)N
#
_pdbx_chem_comp_identifier.comp_id JCM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
4-(4-azanylpyrimidin-2-yl)-~{N}-[2-methyl-5-[4-[2-(4-methylpiperazin-1-yl)ethyl]phenyl]phenyl]-~{N}-propyl-1,3-thiazol-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JCM 'Create component' 2022-04-25 PDBE
JCM 'Modify descriptor' 2022-08-22 RCSB
JCM 'Initial release' 2023-06-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JCM N1 N 5.598 1.339 1
JCM N3 N 15.990 -9.161 2
JCM C4 C 5.598 -0.161 3
JCM C5 C 6.897 -0.910 4
JCM C6 C 6.897 -2.410 5
JCM C7 C 8.196 -3.160 6
JCM C8 C 8.196 -4.660 7
JCM C10 C 10.794 -4.660 8
JCM C13 C 14.691 -6.910 9
JCM C15 C 17.290 -9.911 10
JCM C17 C 13.392 -9.161 11
JCM C20 C 5.598 -3.160 12
JCM C21 C 4.299 -2.410 13
JCM C22 C 4.299 -0.910 14
JCM C24 C 6.897 2.090 15
JCM C26 C 9.131 5.263 16
JCM C28 C 10.351 8.004 17
JCM C1 C 3.000 4.340 18
JCM C2 C 4.299 3.590 19
JCM C3 C 4.299 2.090 20
JCM C9 C 9.495 -5.410 21
JCM C11 C 12.093 -5.410 22
JCM C12 C 12.093 -6.910 23
JCM N2 N 13.392 -7.660 24
JCM C14 C 15.990 -7.660 25
JCM C16 C 14.691 -9.911 26
JCM C18 C 10.794 -3.160 27
JCM C19 C 9.495 -2.410 28
JCM C23 C 3.000 -0.161 29
JCM N4 N 7.054 3.581 30
JCM C25 C 8.521 3.893 31
JCM N5 N 10.623 5.420 32
JCM C27 C 11.233 6.791 33
JCM C29 C 8.860 7.847 34
JCM N6 N 7.978 9.061 35
JCM N7 N 8.249 6.477 36
JCM C30 C 9.271 2.594 37
JCM S1 S 8.267 1.479 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JCM C23 C22 SINGLE NONE 1
JCM C21 C22 DOUBLE NONE 2
JCM C21 C20 SINGLE NONE 3
JCM C22 C4 SINGLE NONE 4
JCM N6 C29 SINGLE NONE 5
JCM C20 C6 DOUBLE NONE 6
JCM C29 N7 SINGLE NONE 7
JCM C29 C28 DOUBLE NONE 8
JCM N7 C26 DOUBLE NONE 9
JCM C28 C27 SINGLE NONE 10
JCM C4 N1 SINGLE NONE 11
JCM C4 C5 DOUBLE NONE 12
JCM C26 C25 SINGLE NONE 13
JCM C26 N5 SINGLE NONE 14
JCM C27 N5 DOUBLE NONE 15
JCM C25 N4 SINGLE NONE 16
JCM C25 C30 DOUBLE NONE 17
JCM N4 C24 DOUBLE NONE 18
JCM N1 C24 SINGLE NONE 19
JCM N1 C3 SINGLE NONE 20
JCM C30 S1 SINGLE NONE 21
JCM C24 S1 SINGLE NONE 22
JCM C3 C2 SINGLE NONE 23
JCM C6 C5 SINGLE NONE 24
JCM C6 C7 SINGLE NONE 25
JCM C1 C2 SINGLE NONE 26
JCM C7 C19 SINGLE NONE 27
JCM C7 C8 DOUBLE NONE 28
JCM C19 C18 DOUBLE NONE 29
JCM C18 C10 SINGLE NONE 30
JCM C8 C9 SINGLE NONE 31
JCM C9 C10 DOUBLE NONE 32
JCM C10 C11 SINGLE NONE 33
JCM C12 C11 SINGLE NONE 34
JCM C12 N2 SINGLE NONE 35
JCM C17 N2 SINGLE NONE 36
JCM C17 C16 SINGLE NONE 37
JCM N2 C13 SINGLE NONE 38
JCM C16 N3 SINGLE NONE 39
JCM C13 C14 SINGLE NONE 40
JCM N3 C14 SINGLE NONE 41
JCM N3 C15 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JCM MurckoScaffold S1 scaffold c1cnc(-c2csc(Nc3cccc(-c4ccc(CCN5CCNCC5)cc4)c3)n2)nc1 InChI=1S/C25H26N6S/c1-3-21(20-7-5-19(6-8-20)9-14-31-15-12-26-13-16-31)17-22(4-1)29-25-30-23(18-32-25)24-27-10-2-11-28-24/h1-8,10-11,17-18,26H,9,12-16H2,(H,29,30) XFJGXUVWGAIGOV-UHFFFAOYSA-N
JCM phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JCM piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
JCM pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
JCM thiazole F4 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JCM N1 S1 1
JCM N3 S1 1
JCM C4 S1 1
JCM C5 S1 1
JCM C6 S1 1
JCM C7 S1 1
JCM C8 S1 1
JCM C10 S1 1
JCM C13 S1 1
JCM C17 S1 1
JCM C20 S1 1
JCM C21 S1 1
JCM C22 S1 1
JCM C24 S1 1
JCM C26 S1 1
JCM C28 S1 1
JCM C9 S1 1
JCM C11 S1 1
JCM C12 S1 1
JCM N2 S1 1
JCM C14 S1 1
JCM C16 S1 1
JCM C18 S1 1
JCM C19 S1 1
JCM N4 S1 1
JCM C25 S1 1
JCM N5 S1 1
JCM C27 S1 1
JCM C29 S1 1
JCM N7 S1 1
JCM C30 S1 1
JCM S1 S1 1
JCM C4 F1 1
JCM C22 F1 1
JCM C21 F1 1
JCM C20 F1 1
JCM C6 F1 1
JCM C5 F1 1
JCM C7 F1 2
JCM C19 F1 2
JCM C18 F1 2
JCM C10 F1 2
JCM C9 F1 2
JCM C8 F1 2
JCM N3 F2 1
JCM C16 F2 1
JCM C17 F2 1
JCM N2 F2 1
JCM C13 F2 1
JCM C14 F2 1
JCM C28 F3 1
JCM C29 F3 1
JCM N7 F3 1
JCM C26 F3 1
JCM N5 F3 1
JCM C27 F3 1
JCM C30 F4 1
JCM C25 F4 1
JCM N4 F4 1
JCM C24 F4 1
JCM S1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JCM
_pdbe_chem_comp_rdkit_properties.exactmw 527.283
_pdbe_chem_comp_rdkit_properties.amw 527.742
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.367
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 281.630
_pdbe_chem_comp_rdkit_properties.tpsa 74.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.484
_pdbe_chem_comp_rdkit_properties.CrippenMR 153.457
_pdbe_chem_comp_rdkit_properties.chi0v 19.355
_pdbe_chem_comp_rdkit_properties.chi1v 10.802
_pdbe_chem_comp_rdkit_properties.chi2v 5.042
_pdbe_chem_comp_rdkit_properties.chi3v 5.042
_pdbe_chem_comp_rdkit_properties.chi4v 3.375
_pdbe_chem_comp_rdkit_properties.chi0n 55.539
_pdbe_chem_comp_rdkit_properties.chi1n 28.380
_pdbe_chem_comp_rdkit_properties.chi2n 4.290
_pdbe_chem_comp_rdkit_properties.chi3n 4.290
_pdbe_chem_comp_rdkit_properties.chi4n 2.685
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.330
_pdbe_chem_comp_rdkit_properties.kappa1 6.864
_pdbe_chem_comp_rdkit_properties.kappa2 12.024
_pdbe_chem_comp_rdkit_properties.kappa3 6.205
_pdbe_chem_comp_rdkit_properties.Phi 2.172
#
_pdbe_chem_comp_external_mappings.comp_id JCM
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168268159
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JCM N1 -3.585 0.079 -0.475 ETKDGv3 1
JCM N3 8.841 0.982 1.043 ETKDGv3 2
JCM C4 -2.362 0.837 -0.492 ETKDGv3 3
JCM C5 -1.190 0.199 -0.648 ETKDGv3 4
JCM C6 0.093 0.944 -0.643 ETKDGv3 5
JCM C7 1.375 0.211 -0.805 ETKDGv3 6
JCM C8 2.373 0.708 -1.561 ETKDGv3 7
JCM C10 3.805 -1.229 -1.120 ETKDGv3 8
JCM C13 7.295 0.087 -0.718 ETKDGv3 9
JCM C15 10.262 0.749 0.743 ETKDGv3 10
JCM C17 6.754 -0.213 1.684 ETKDGv3 11
JCM C20 0.071 2.277 -0.468 ETKDGv3 12
JCM C21 -1.208 2.990 -0.294 ETKDGv3 13
JCM C22 -2.374 2.323 -0.319 ETKDGv3 14
JCM C24 -4.372 0.022 0.730 ETKDGv3 15
JCM C26 -7.534 -0.888 2.315 ETKDGv3 16
JCM C28 -10.126 -1.786 2.748 ETKDGv3 17
JCM C1 -4.263 1.138 -3.424 ETKDGv3 18
JCM C2 -4.977 0.123 -2.532 ETKDGv3 19
JCM C3 -3.997 -0.680 -1.666 ETKDGv3 20
JCM C9 3.638 -0.039 -1.721 ETKDGv3 21
JCM C11 5.102 -1.987 -1.244 ETKDGv3 22
JCM C12 5.963 -1.835 0.019 ETKDGv3 23
JCM N2 6.316 -0.420 0.279 ETKDGv3 24
JCM C14 8.072 1.301 -0.186 ETKDGv3 25
JCM C16 8.282 -0.154 1.810 ETKDGv3 26
JCM C18 2.711 -1.779 -0.286 ETKDGv3 27
JCM C19 1.566 -1.102 -0.137 ETKDGv3 28
JCM C23 -3.659 3.085 -0.134 ETKDGv3 29
JCM N4 -5.582 -0.440 0.758 ETKDGv3 30
JCM C25 -6.162 -0.415 2.074 ETKDGv3 31
JCM N5 -8.098 -0.857 3.639 ETKDGv3 32
JCM C27 -9.309 -1.273 3.861 ETKDGv3 33
JCM C29 -9.591 -1.811 1.520 ETKDGv3 34
JCM N6 -10.341 -2.298 0.407 ETKDGv3 35
JCM N7 -8.247 -1.340 1.322 ETKDGv3 36
JCM C30 -5.371 0.063 3.039 ETKDGv3 37
JCM S1 -3.801 0.528 2.342 ETKDGv3 38
JCM H2 -1.181 -0.877 -0.773 ETKDGv3 39
JCM H3 2.261 1.651 -2.082 ETKDGv3 40
JCM H4 8.029 -0.698 -1.006 ETKDGv3 41
JCM H5 6.754 0.400 -1.635 ETKDGv3 42
JCM H6 10.385 -0.087 0.020 ETKDGv3 43
JCM H7 10.818 0.510 1.675 ETKDGv3 44
JCM H8 10.715 1.669 0.316 ETKDGv3 45
JCM H9 6.363 -0.995 2.372 ETKDGv3 46
JCM H10 6.331 0.749 2.045 ETKDGv3 47
JCM H11 0.990 2.850 -0.430 ETKDGv3 48
JCM H12 -1.190 4.063 -0.149 ETKDGv3 49
JCM H13 -11.135 -2.134 2.928 ETKDGv3 50
JCM H14 -3.707 1.878 -2.816 ETKDGv3 51
JCM H15 -5.012 1.681 -4.038 ETKDGv3 52
JCM H16 -3.555 0.621 -4.105 ETKDGv3 53
JCM H17 -5.719 0.645 -1.891 ETKDGv3 54
JCM H18 -5.534 -0.581 -3.187 ETKDGv3 55
JCM H19 -4.488 -1.627 -1.350 ETKDGv3 56
JCM H20 -3.113 -0.981 -2.270 ETKDGv3 57
JCM H21 4.422 0.390 -2.331 ETKDGv3 58
JCM H22 4.873 -3.065 -1.390 ETKDGv3 59
JCM H23 5.671 -1.665 -2.143 ETKDGv3 60
JCM H24 6.879 -2.461 -0.073 ETKDGv3 61
JCM H25 5.372 -2.253 0.864 ETKDGv3 62
JCM H27 7.348 2.109 0.052 ETKDGv3 63
JCM H28 8.727 1.700 -0.994 ETKDGv3 64
JCM H29 8.550 -0.031 2.882 ETKDGv3 65
JCM H30 8.701 -1.127 1.462 ETKDGv3 66
JCM H31 2.838 -2.731 0.215 ETKDGv3 67
JCM H32 0.787 -1.514 0.492 ETKDGv3 68
JCM H33 -3.831 3.267 0.947 ETKDGv3 69
JCM H34 -3.611 4.062 -0.660 ETKDGv3 70
JCM H35 -4.524 2.529 -0.548 ETKDGv3 71
JCM H36 -9.716 -1.242 4.863 ETKDGv3 72
JCM H37 -11.319 -2.646 0.524 ETKDGv3 73
JCM H38 -9.912 -2.312 -0.545 ETKDGv3 74
JCM H39 -5.641 0.155 4.083 ETKDGv3 75
#