Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H25

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 F3 F F3 N N N 0 9.466 62.156 1.543
2 C17 C C17 N Y N 0 8.629 61.683 2.462
3 C11 C C11 N Y N 0 8.222 60.356 2.423
4 C9 C C9 N Y N 0 7.374 59.827 3.4
5 N1 N N1 N N N 0 6.912 58.507 3.349
6 C21 C C21 N N N 0 7.38 57.542 4.175
7 C8 C C8 N N N 0 5.961 58.202 2.436
8 C29 C C29 N N N 0 6.899 56.255 4.118
9 C30 C C30 N N N 0 5.912 55.917 3.205
10 C23 C C23 N N N 0 5.441 56.915 2.361
11 O25 O O25 N N N 0 5.527 59.122 1.669
12 C26 C C26 N Y N 0 6.928 60.693 4.408
13 C28 C C28 N Y N 0 7.358 62.029 4.431
14 C16 C C16 N Y N 0 8.204 62.539 3.444
15 N15 N N15 N N N 0 8.604 63.885 3.395
16 C14 C C14 N N N 0 8.186 64.622 2.322
17 O27 O O27 N N N 0 7.499 64.137 1.405
18 C22 C C22 N N N 0 8.545 66.084 2.228
19 N4 N N4 N N N 0 9.49 66.422 3.286
20 C31 C C31 N N N 0 9.578 67.877 3.558
21 C34 C C34 S N N 0 10.937 67.987 4.249
22 O33 O O33 N N N 0 11.586 69.228 3.932
23 C20 C C20 N N N 0 10.825 65.964 2.895
24 C6 C C6 S N N 0 11.781 66.87 3.642
25 N7 N N7 N N N 0 12.49 66.169 4.727
26 C5 C C5 N N N 0 13.472 65.316 4.451
27 O24 O O24 N N N 0 13.801 65.036 3.291
28 C2 C C2 N Y N 0 14.207 64.685 5.592
29 C12 C C12 N Y N 0 14.163 64.964 6.975
30 C19 C C19 N Y N 0 15.034 64.124 7.674
31 S3 S S3 N Y N 0 15.307 63.428 5.133
32 C10 C C10 N Y N 0 15.694 63.296 6.8
33 CL1 CL CL1 N N N 0 16.901 62.04 7.264
34 H11 H H11 N N N 0 8.568 59.72 1.622
35 H26 H H26 N N N 0 6.252 60.332 5.169
36 H21 H H21 N N N 0 8.147 57.788 4.894
37 H29 H H29 N N N 0 7.292 55.504 4.787
38 H30 H H30 N N N 0 5.522 54.911 3.152
39 H28 H H28 N N N 0 7.027 62.677 5.229
40 H23 H H23 N N N 0 4.667 56.69 1.643
41 H15 H H15 N N N 0 9.17 64.287 4.115
42 H221 H 1H22 N N N 0 9.003 66.287 1.249
43 H222 H 2H22 N N N 0 7.636 66.693 2.341
44 H201 H 1H20 N N N 0 10.979 64.911 3.175
45 H202 H 2H20 N N N 0 10.976 66.013 1.806
46 H311 H 1H31 N N N 0 9.534 68.474 2.635
47 H312 H 2H31 N N N 0 8.744 68.265 4.161
48 H6 H H6 N N N 0 12.546 67.242 2.945
49 H34 H H34 N N N 0 10.819 67.925 5.341
50 H33 H H33 N N N 0 11.729 69.724 4.73
51 H7 H H7 N N N 0 12.231 66.336 5.678
52 H12 H H12 N N N 0 13.542 65.722 7.43
53 H19 H H19 N N N 0 15.168 64.126 8.746