data_H25
#
_chem_comp.id H25
_chem_comp.name
"5-Chloro-thiophene-2-carboxylic acid ((3S,4S)-1-{[2-fluoro-4-(2-oxo-2H-pyridin-1-yl)-phenylcarbamoyl]-methyl}-4-hydroxy-pyrrolidin-3-yl)-amide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C22 H20 Cl F N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-06-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 490.935
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H25
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VWN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H25 F3 F3 F 0 1 N N N N N N 9.466 62.156 1.543 9.466 62.156 1.543 F3 H25 1
H25 C17 C17 C 0 1 Y N N N N N 8.629 61.683 2.462 8.629 61.683 2.462 C17 H25 2
H25 C11 C11 C 0 1 Y N N N N N 8.222 60.356 2.423 8.222 60.356 2.423 C11 H25 3
H25 C9 C9 C 0 1 Y N N N N N 7.374 59.827 3.400 7.374 59.827 3.400 C9 H25 4
H25 N1 N1 N 0 1 N N N N N N 6.912 58.507 3.349 6.912 58.507 3.349 N1 H25 5
H25 C21 C21 C 0 1 N N N N N N 7.380 57.542 4.175 7.380 57.542 4.175 C21 H25 6
H25 C29 C29 C 0 1 N N N N N N 6.899 56.255 4.118 6.899 56.255 4.118 C29 H25 7
H25 C30 C30 C 0 1 N N N N N N 5.912 55.917 3.205 5.912 55.917 3.205 C30 H25 8
H25 C23 C23 C 0 1 N N N N N N 5.441 56.915 2.361 5.441 56.915 2.361 C23 H25 9
H25 C8 C8 C 0 1 N N N N N N 5.961 58.202 2.436 5.961 58.202 2.436 C8 H25 10
H25 O25 O25 O 0 1 N N N N N N 5.527 59.122 1.669 5.527 59.122 1.669 O25 H25 11
H25 C26 C26 C 0 1 Y N N N N N 6.928 60.693 4.408 6.928 60.693 4.408 C26 H25 12
H25 C28 C28 C 0 1 Y N N N N N 7.358 62.029 4.431 7.358 62.029 4.431 C28 H25 13
H25 C16 C16 C 0 1 Y N N N N N 8.204 62.539 3.444 8.204 62.539 3.444 C16 H25 14
H25 N15 N15 N 0 1 N N N N N N 8.604 63.885 3.395 8.604 63.885 3.395 N15 H25 15
H25 C14 C14 C 0 1 N N N N N N 8.186 64.622 2.322 8.186 64.622 2.322 C14 H25 16
H25 O27 O27 O 0 1 N N N N N N 7.499 64.137 1.405 7.499 64.137 1.405 O27 H25 17
H25 C22 C22 C 0 1 N N N N N N 8.545 66.084 2.228 8.545 66.084 2.228 C22 H25 18
H25 N4 N4 N 0 1 N N N N N N 9.490 66.422 3.286 9.490 66.422 3.286 N4 H25 19
H25 C31 C31 C 0 1 N N N N N N 9.578 67.877 3.558 9.578 67.877 3.558 C31 H25 20
H25 C34 C34 C 0 1 N N S N N N 10.937 67.987 4.249 10.937 67.987 4.249 C34 H25 21
H25 O33 O33 O 0 1 N N N N N N 11.586 69.228 3.932 11.586 69.228 3.932 O33 H25 22
H25 C20 C20 C 0 1 N N N N N N 10.825 65.964 2.895 10.825 65.964 2.895 C20 H25 23
H25 C6 C6 C 0 1 N N S N N N 11.781 66.870 3.642 11.781 66.870 3.642 C6 H25 24
H25 N7 N7 N 0 1 N N N N N N 12.490 66.169 4.727 12.490 66.169 4.727 N7 H25 25
H25 C5 C5 C 0 1 N N N N N N 13.472 65.316 4.451 13.472 65.316 4.451 C5 H25 26
H25 O24 O24 O 0 1 N N N N N N 13.801 65.036 3.291 13.801 65.036 3.291 O24 H25 27
H25 C2 C2 C 0 1 Y N N N N N 14.207 64.685 5.592 14.207 64.685 5.592 C2 H25 28
H25 C12 C12 C 0 1 Y N N N N N 14.163 64.964 6.975 14.163 64.964 6.975 C12 H25 29
H25 C19 C19 C 0 1 Y N N N N N 15.034 64.124 7.674 15.034 64.124 7.674 C19 H25 30
H25 S3 S3 S 0 1 Y N N N N N 15.307 63.428 5.133 15.307 63.428 5.133 S3 H25 31
H25 C10 C10 C 0 1 Y N N N N N 15.694 63.296 6.800 15.694 63.296 6.800 C10 H25 32
H25 CL1 CL1 CL 0 0 N N N N N N 16.901 62.040 7.264 16.901 62.040 7.264 CL1 H25 33
H25 H11 H11 H 0 1 N N N N N N 8.568 59.720 1.622 8.568 59.720 1.622 H11 H25 34
H25 H26 H26 H 0 1 N N N N N N 6.252 60.331 5.169 6.252 60.332 5.169 H26 H25 35
H25 H21 H21 H 0 1 N N N N N N 8.147 57.788 4.894 8.147 57.788 4.894 H21 H25 36
H25 H29 H29 H 0 1 N N N N N N 7.292 55.504 4.788 7.292 55.504 4.787 H29 H25 37
H25 H30 H30 H 0 1 N N N N N N 5.522 54.911 3.152 5.522 54.911 3.152 H30 H25 38
H25 H23 H23 H 0 1 N N N N N N 4.667 56.690 1.643 4.667 56.690 1.643 H23 H25 39
H25 H28 H28 H 0 1 N N N N N N 7.027 62.677 5.230 7.027 62.677 5.229 H28 H25 40
H25 H15 H15 H 0 1 N N N N N N 9.170 64.287 4.114 9.170 64.287 4.115 H15 H25 41
H25 H221 1H22 H 0 0 N N N N N N 9.003 66.287 1.249 9.003 66.287 1.249 H221 H25 42
H25 H222 2H22 H 0 0 N N N N N N 7.636 66.693 2.341 7.636 66.693 2.341 H222 H25 43
H25 H201 1H20 H 0 0 N N N N N N 10.979 64.911 3.175 10.979 64.911 3.175 H201 H25 44
H25 H202 2H20 H 0 0 N N N N N N 10.976 66.013 1.806 10.976 66.013 1.806 H202 H25 45
H25 H311 1H31 H 0 0 N N N N N N 9.534 68.474 2.635 9.534 68.474 2.635 H311 H25 46
H25 H312 2H31 H 0 0 N N N N N N 8.744 68.265 4.161 8.744 68.265 4.161 H312 H25 47
H25 H6 H6 H 0 1 N N N N N N 12.546 67.242 2.945 12.546 67.242 2.945 H6 H25 48
H25 H34 H34 H 0 1 N N N N N N 10.819 67.925 5.341 10.819 67.925 5.341 H34 H25 49
H25 H33 H33 H 0 1 N N N N N N 11.729 69.724 4.730 11.729 69.724 4.730 H33 H25 50
H25 H7 H7 H 0 1 N N N N N N 12.231 66.336 5.678 12.231 66.336 5.678 H7 H25 51
H25 H12 H12 H 0 1 N N N N N N 13.542 65.722 7.430 13.542 65.722 7.430 H12 H25 52
H25 H19 H19 H 0 1 N N N N N N 15.168 64.126 8.746 15.168 64.126 8.746 H19 H25 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H25 F3 C17 SING N N 1
H25 C17 C11 SING Y N 2
H25 C17 C16 DOUB Y N 3
H25 C11 C9 DOUB Y N 4
H25 C9 N1 SING N N 5
H25 C9 C26 SING Y N 6
H25 N1 C21 SING N N 7
H25 N1 C8 SING N N 8
H25 C21 C29 DOUB N N 9
H25 C29 C30 SING N N 10
H25 C30 C23 DOUB N N 11
H25 C23 C8 SING N N 12
H25 C8 O25 DOUB N N 13
H25 C26 C28 DOUB Y N 14
H25 C28 C16 SING Y N 15
H25 C16 N15 SING N N 16
H25 N15 C14 SING N N 17
H25 C14 O27 DOUB N N 18
H25 C14 C22 SING N N 19
H25 C22 N4 SING N N 20
H25 N4 C20 SING N N 21
H25 N4 C31 SING N N 22
H25 C20 C6 SING N N 23
H25 C34 C31 SING N N 24
H25 C34 O33 SING N N 25
H25 C34 C6 SING N N 26
H25 N7 C5 SING N N 27
H25 N7 C6 SING N N 28
H25 C5 O24 DOUB N N 29
H25 C5 C2 SING N N 30
H25 C2 C12 DOUB Y N 31
H25 C2 S3 SING Y N 32
H25 C12 C19 SING Y N 33
H25 C19 C10 DOUB Y N 34
H25 S3 C10 SING Y N 35
H25 C10 CL1 SING N N 36
H25 C11 H11 SING N N 37
H25 C26 H26 SING N N 38
H25 C21 H21 SING N N 39
H25 C29 H29 SING N N 40
H25 C30 H30 SING N N 41
H25 C23 H23 SING N N 42
H25 C28 H28 SING N N 43
H25 N15 H15 SING N N 44
H25 C22 H221 SING N N 45
H25 C22 H222 SING N N 46
H25 C20 H201 SING N N 47
H25 C20 H202 SING N N 48
H25 C31 H311 SING N N 49
H25 C31 H312 SING N N 50
H25 C6 H6 SING N N 51
H25 C34 H34 SING N N 52
H25 O33 H33 SING N N 53
H25 N7 H7 SING N N 54
H25 C12 H12 SING N N 55
H25 C19 H19 SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H25 SMILES ACDLabs 10.04 O=C(NC3C(O)CN(CC(=O)Nc2ccc(N1C=CC=CC1=O)cc2F)C3)c4sc(Cl)cc4
H25 SMILES_CANONICAL CACTVS 3.341 O[C@H]1CN(C[C@@H]1NC(=O)c2sc(Cl)cc2)CC(=O)Nc3ccc(cc3F)N4C=CC=CC4=O
H25 SMILES CACTVS 3.341 O[CH]1CN(C[CH]1NC(=O)c2sc(Cl)cc2)CC(=O)Nc3ccc(cc3F)N4C=CC=CC4=O
H25 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1N2C=CC=CC2=O)F)NC(=O)C[N@]3C[C@@H]([C@H](C3)O)NC(=O)c4ccc(s4)Cl
H25 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1N2C=CC=CC2=O)F)NC(=O)CN3CC(C(C3)O)NC(=O)c4ccc(s4)Cl
H25 InChI InChI 1.03 InChI=1S/C22H20ClFN4O4S/c23-19-7-6-18(33-19)22(32)26-16-10-27(11-17(16)29)12-20(30)25-15-5-4-13(9-14(15)24)28-8-2-1-3-21(28)31/h1-9,16-17,29H,10-12H2,(H,25,30)(H,26,32)/t16-,17-/m0/s1
H25 InChIKey InChI 1.03 ARAVOODWJJJNBY-IRXDYDNUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H25 "SYSTEMATIC NAME" ACDLabs 10.04 5-chloro-N-[(3S,4S)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)-4-hydroxypyrrolidin-3-yl]thiophene-2-carboxamide
H25 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 5-chloro-N-[(1S,3S,4S)-1-[2-[[2-fluoro-4-(2-oxopyridin-1-yl)phenyl]amino]-2-oxo-ethyl]-4-hydroxy-pyrrolidin-3-yl]thiophene-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H25 'Create component' 2008-06-26 EBI
H25 'Modify aromatic_flag' 2011-06-04 RCSB
H25 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id H25
_pdbe_chem_comp_drugbank_details.drugbank_id DB07875
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'5-Chloro-thiophene-2-carboxylic acid ((3S,4S)-1-{[2-fluoro-4-(2-oxo-2H-pyridin-1-yl)-phenylcarbamoyl]-methyl}-4-hydroxy-pyrrolidin-3-yl)-amide'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id H25
_pdbe_chem_comp_synonyms.name
'5-Chloro-thiophene-2-carboxylic acid ((3S,4S)-1-{[2-fluoro-4-(2-oxo-2H-pyridin-1-yl)-phenylcarbamoyl]-methyl}-4-hydroxy-pyrrolidin-3-yl)-amide'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id H25
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07875
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acid amides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acid amides. These are amide derivatives of alpha amino acids.'
#
_pdbe_chem_comp_drugbank_targets.comp_id H25
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07875
_pdbe_chem_comp_drugbank_targets.name 'Coagulation factor X'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00742
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H25 F3 F 3.000 -3.319 1
H25 C17 C 4.299 -4.069 2
H25 C11 C 4.299 -5.569 3
H25 C9 C 5.598 -6.319 4
H25 N1 N 5.598 -7.819 5
H25 C21 C 6.897 -8.569 6
H25 C29 C 6.897 -10.069 7
H25 C30 C 5.598 -10.819 8
H25 C23 C 4.299 -10.069 9
H25 C8 C 4.299 -8.569 10
H25 O25 O 3.000 -7.819 11
H25 C26 C 6.897 -5.569 12
H25 C28 C 6.897 -4.069 13
H25 C16 C 5.598 -3.319 14
H25 N15 N 5.598 -1.819 15
H25 C14 C 6.897 -1.069 16
H25 O27 O 8.196 -1.819 17
H25 C22 C 6.897 0.431 18
H25 N4 N 8.196 1.181 19
H25 C31 C 9.566 0.571 20
H25 C34 C 10.570 1.685 21
H25 O33 O 12.062 1.528 22
H25 C20 C 8.353 2.672 23
H25 C6 C 9.820 2.984 24
H25 N7 N 10.430 4.354 25
H25 C5 C 9.549 5.568 26
H25 O24 O 8.057 5.411 27
H25 C2 C 10.159 6.938 28
H25 C12 C 11.626 7.250 29
H25 C19 C 11.783 8.742 30
H25 S3 S 9.409 8.237 31
H25 C10 C 10.412 9.352 32
H25 CL1 Cl 10.101 10.819 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H25 F3 C17 SINGLE NONE 1
H25 C17 C11 DOUBLE NONE 2
H25 C17 C16 SINGLE NONE 3
H25 C11 C9 SINGLE NONE 4
H25 C9 N1 SINGLE NONE 5
H25 C9 C26 DOUBLE NONE 6
H25 N1 C21 SINGLE NONE 7
H25 N1 C8 SINGLE NONE 8
H25 C21 C29 DOUBLE NONE 9
H25 C29 C30 SINGLE NONE 10
H25 C30 C23 DOUBLE NONE 11
H25 C23 C8 SINGLE NONE 12
H25 C8 O25 DOUBLE NONE 13
H25 C26 C28 SINGLE NONE 14
H25 C28 C16 DOUBLE NONE 15
H25 C16 N15 SINGLE NONE 16
H25 N15 C14 SINGLE NONE 17
H25 C14 O27 DOUBLE NONE 18
H25 C14 C22 SINGLE NONE 19
H25 C22 N4 SINGLE NONE 20
H25 N4 C20 SINGLE NONE 21
H25 N4 C31 SINGLE NONE 22
H25 C20 C6 SINGLE NONE 23
H25 C34 C31 SINGLE NONE 24
H25 C34 O33 SINGLE BEGINWEDGE 25
H25 C34 C6 SINGLE NONE 26
H25 N7 C5 SINGLE NONE 27
H25 C6 N7 SINGLE BEGINDASH 28
H25 C5 O24 DOUBLE NONE 29
H25 C5 C2 SINGLE NONE 30
H25 C2 C12 DOUBLE NONE 31
H25 C2 S3 SINGLE NONE 32
H25 C12 C19 SINGLE NONE 33
H25 C19 C10 DOUBLE NONE 34
H25 S3 C10 SINGLE NONE 35
H25 C10 CL1 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
H25 MurckoScaffold S1 scaffold 'O=C(CN1CC[C@@H](NC(=O)c2cccs2)C1)Nc1ccc(-n2ccccc2=O)cc1' InChI=1S/C22H22N4O3S/c27-20(15-25-12-10-17(14-25)24-22(29)19-4-3-13-30-19)23-16-6-8-18(9-7-16)26-11-2-1-5-21(26)28/h1-9,11,13,17H,10,12,14-15H2,(H,23,27)(H,24,29)/t17-/m1/s1 BRAAKPSEIHEKNZ-QGZVFWFLSA-N
H25 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
H25 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
H25 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
H25 pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
H25 thiophen F5 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
H25 C17 S1 1
H25 C11 S1 1
H25 C9 S1 1
H25 N1 S1 1
H25 C21 S1 1
H25 C29 S1 1
H25 C30 S1 1
H25 C23 S1 1
H25 C8 S1 1
H25 O25 S1 1
H25 C26 S1 1
H25 C28 S1 1
H25 C16 S1 1
H25 N15 S1 1
H25 C14 S1 1
H25 O27 S1 1
H25 C22 S1 1
H25 N4 S1 1
H25 C31 S1 1
H25 C34 S1 1
H25 C20 S1 1
H25 C6 S1 1
H25 N7 S1 1
H25 C5 S1 1
H25 O24 S1 1
H25 C2 S1 1
H25 C12 S1 1
H25 C19 S1 1
H25 S3 S1 1
H25 C10 S1 1
H25 N15 F1 1
H25 C14 F1 1
H25 O27 F1 1
H25 C22 F1 1
H25 N7 F1 2
H25 C5 F1 2
H25 O24 F1 2
H25 C2 F1 2
H25 O27 F2 1
H25 C14 F2 1
H25 C22 F2 1
H25 N4 F2 1
H25 C17 F3 1
H25 C11 F3 1
H25 C9 F3 1
H25 C26 F3 1
H25 C28 F3 1
H25 C16 F3 1
H25 C21 F4 1
H25 C29 F4 1
H25 C30 F4 1
H25 C23 F4 1
H25 C8 F4 1
H25 N1 F4 1
H25 C2 F5 1
H25 C12 F5 1
H25 C19 F5 1
H25 C10 F5 1
H25 S3 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id H25
_pdbe_chem_comp_rdkit_properties.exactmw 490.088
_pdbe_chem_comp_rdkit_properties.amw 490.944
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.227
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 225.074
_pdbe_chem_comp_rdkit_properties.tpsa 103.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.380
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.014
_pdbe_chem_comp_rdkit_properties.chi0v 17.158
_pdbe_chem_comp_rdkit_properties.chi1v 9.533
_pdbe_chem_comp_rdkit_properties.chi2v 4.590
_pdbe_chem_comp_rdkit_properties.chi3v 4.590
_pdbe_chem_comp_rdkit_properties.chi4v 2.973
_pdbe_chem_comp_rdkit_properties.chi0n 35.586
_pdbe_chem_comp_rdkit_properties.chi1n 18.141
_pdbe_chem_comp_rdkit_properties.chi2n 3.502
_pdbe_chem_comp_rdkit_properties.chi3n 3.502
_pdbe_chem_comp_rdkit_properties.chi4n 2.178
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.050
_pdbe_chem_comp_rdkit_properties.kappa1 8.953
_pdbe_chem_comp_rdkit_properties.kappa2 9.836
_pdbe_chem_comp_rdkit_properties.kappa3 5.479
_pdbe_chem_comp_rdkit_properties.Phi 2.669
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
H25 UniChem DrugBank DB07875
H25 UniChem ZINC ZINC000038995983
H25 UniChem SureChEMBL SCHEMBL8260028
H25 UniChem 'Probes And Drugs' PD004931
H25 UniChem BindingDb 50295587
H25 UniChem 'PubChem TPHARMA' 17431169
H25 UniChem PubChem 11979006
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H25 F3 -3.006 3.236 0.442 ETKDGv3 1
H25 C17 -3.477 1.972 0.301 ETKDGv3 2
H25 C11 -4.742 1.696 0.643 ETKDGv3 3
H25 C9 -5.277 0.320 0.501 ETKDGv3 4
H25 N1 -6.645 0.039 0.850 ETKDGv3 5
H25 C21 -7.695 0.891 0.352 ETKDGv3 6
H25 C29 -8.976 0.643 0.649 ETKDGv3 7
H25 C30 -9.348 -0.506 1.499 ETKDGv3 8
H25 C23 -8.416 -1.319 2.002 ETKDGv3 9
H25 C8 -6.998 -1.066 1.707 ETKDGv3 10
H25 O25 -6.112 -1.797 2.226 ETKDGv3 11
H25 C26 -4.476 -0.647 0.021 ETKDGv3 12
H25 C28 -3.078 -0.346 -0.349 ETKDGv3 13
H25 C16 -2.597 0.906 -0.238 ETKDGv3 14
H25 N15 -1.231 1.217 -0.560 ETKDGv3 15
H25 C14 -0.494 0.601 -1.628 ETKDGv3 16
H25 O27 -1.089 -0.062 -2.520 ETKDGv3 17
H25 C22 0.992 0.781 -1.711 ETKDGv3 18
H25 N4 1.636 0.275 -0.484 ETKDGv3 19
H25 C31 1.584 -1.195 -0.373 ETKDGv3 20
H25 C34 2.981 -1.683 0.028 ETKDGv3 21
H25 O33 2.944 -2.610 1.085 ETKDGv3 22
H25 C20 3.053 0.654 -0.426 ETKDGv3 23
H25 C6 3.749 -0.417 0.396 ETKDGv3 24
H25 N7 5.176 -0.511 0.067 ETKDGv3 25
H25 C5 6.103 0.528 0.427 ETKDGv3 26
H25 O24 5.719 1.486 1.150 ETKDGv3 27
H25 C2 7.508 0.499 -0.021 ETKDGv3 28
H25 C12 8.039 -0.334 -0.923 ETKDGv3 29
H25 C19 9.477 -0.104 -1.183 ETKDGv3 30
H25 S3 8.758 1.634 0.553 ETKDGv3 31
H25 C10 9.999 0.897 -0.482 ETKDGv3 32
H25 CL1 11.668 1.420 -0.569 ETKDGv3 33
H25 H11 -5.374 2.482 1.038 ETKDGv3 34
H25 H26 -4.848 -1.655 -0.114 ETKDGv3 35
H25 H21 -7.457 1.734 -0.285 ETKDGv3 36
H25 H29 -9.754 1.288 0.260 ETKDGv3 37
H25 H30 -10.393 -0.687 1.718 ETKDGv3 38
H25 H23 -8.703 -2.153 2.630 ETKDGv3 39
H25 H28 -2.447 -1.159 -0.684 ETKDGv3 40
H25 H15 -0.763 1.984 -0.027 ETKDGv3 41
H25 H221 1.194 1.869 -1.819 ETKDGv3 42
H25 H222 1.397 0.271 -2.615 ETKDGv3 43
H25 H201 3.505 0.692 -1.446 ETKDGv3 44
H25 H202 3.158 1.650 0.055 ETKDGv3 45
H25 H311 1.279 -1.688 -1.325 ETKDGv3 46
H25 H312 0.830 -1.463 0.398 ETKDGv3 47
H25 H6 3.623 -0.189 1.479 ETKDGv3 48
H25 H34 3.445 -2.172 -0.858 ETKDGv3 49
H25 H33 2.501 -2.175 1.861 ETKDGv3 50
H25 H7 5.540 -1.386 -0.370 ETKDGv3 51
H25 H12 7.482 -1.100 -1.442 ETKDGv3 52
H25 H19 10.053 -0.694 -1.885 ETKDGv3 53
#