Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DOJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 FBC F F1 N N N 0 -7.18 1.482 -1.306
2 CBB C C1 N N N 0 -5.891 0.939 -1.349
3 FBD F F2 N N N 0 -5.926 -0.295 -2.006
4 FBE F F3 N N N 0 -5.041 1.811 -2.039
5 CAZ C C2 N Y N 0 -5.38 0.746 0.055
6 CBA C C3 N Y N 0 -4.117 0.225 0.264
7 CAY C C4 N Y N 0 -6.172 1.096 1.133
8 CAX C C5 N Y N 0 -5.706 0.921 2.423
9 CAW C C6 N Y N 0 -4.447 0.396 2.639
10 CAV C C7 N Y N 0 -3.647 0.048 1.559
11 NAU N N1 N N N 0 -2.369 -0.48 1.774
12 CAS C C8 N N N 0 -1.374 -0.212 0.905
13 OAT O O1 N N N 0 -1.56 0.565 -0.011
14 NAR N N2 N N N 0 -0.173 -0.806 1.053
15 CAQ C C9 S N N 0 0.909 -0.515 0.108
16 CAE C C10 S N N 0 1.892 -1.688 0.079
17 CAF C C11 N N N 0 3.05 -1.353 -0.863
18 OAD O O2 N N N 0 1.221 -2.861 -0.388
19 CAB C C12 S N N 0 1.744 -4.08 0.144
20 OAC O O3 N N N 0 3.084 -4.264 -0.317
21 CAA C C13 N N N 0 0.879 -5.252 -0.322
22 CAP C C14 N N N 0 1.648 0.751 0.551
23 CAO C C15 N N N 0 2.814 1.016 -0.405
24 NAG N N3 N N N 0 3.727 -0.136 -0.395
25 CAH C C16 N N N 0 4.928 0.139 -1.195
26 CAI C C17 N Y N 0 5.725 1.239 -0.542
27 CAJ C C18 N Y N 0 6.697 0.929 0.39
28 CAK C C19 N Y N 0 7.428 1.938 0.989
29 CAL C C20 N Y N 0 7.185 3.258 0.655
30 CAM C C21 N Y N 0 6.213 3.568 -0.277
31 CAN C C22 N Y N 0 5.487 2.558 -0.88
32 HBA1 H H1 N N N 0 -3.497 -0.044 -0.578
33 HAY1 H H2 N N N 0 -7.157 1.508 0.966
34 HAX1 H H3 N N N 0 -6.328 1.195 3.263
35 HAW1 H H4 N N N 0 -4.084 0.26 3.647
36 HAU1 H H5 N N N 0 -2.199 -1.038 2.549
37 HAR1 H H6 N N N 0 -0.025 -1.425 1.784
38 HAQ1 H H7 N N N 0 0.492 -0.364 -0.888
39 HAE1 H H8 N N N 0 2.277 -1.865 1.083
40 HAF1 H H9 N N N 0 3.76 -2.181 -0.875
41 HAF2 H H10 N N N 0 2.665 -1.19 -1.869
42 HAB1 H H11 N N N 0 1.738 -4.033 1.233
43 HAC1 H H12 N N N 0 3.166 -4.315 -1.279
44 HAA3 H H13 N N N 0 1.277 -6.182 0.084
45 HAA1 H H14 N N N 0 -0.144 -5.111 0.03
46 HAA2 H H15 N N N 0 0.885 -5.298 -1.411
47 HAP2 H H16 N N N 0 0.962 1.598 0.532
48 HAP1 H H17 N N N 0 2.029 0.615 1.563
49 HAO1 H H18 N N N 0 2.429 1.166 -1.414
50 HAO2 H H19 N N N 0 3.351 1.908 -0.084
51 HAH1 H H21 N N N 0 5.537 -0.763 -1.257
52 HAH2 H H22 N N N 0 4.635 0.448 -2.198
53 HAJ1 H H23 N N N 0 6.886 -0.102 0.65
54 HAK1 H H24 N N N 0 8.187 1.696 1.717
55 HAL1 H H25 N N N 0 7.756 4.047 1.123
56 HAM1 H H26 N N N 0 6.027 4.599 -0.541
57 HAN1 H H27 N N N 0 4.727 2.8 -1.608