Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DGP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -5.025 -0.79 0.346
2 OP1 O O1P N N N 0 -6.036 0.152 -0.184
3 OP2 O O2P N N N 0 -5.526 -1.375 1.76
4 OP3 O O3P N N Y 0 -4.821 -2.001 -0.695
5 O5' O O5' N N N 0 -3.627 -0.017 0.55
6 C5' C C5' N N N 0 -2.976 0.703 -0.498
7 C4' C C4' R N N 0 -1.678 1.314 0.033
8 O4' O O4' N N N 0 -0.73 0.278 0.372
9 C3' C C3' S N N 0 -0.955 2.114 -1.081
10 O3' O O3' N N N 0 -1.444 3.455 -1.145
11 C2' C C2' N N N 0 0.516 2.084 -0.6
12 C1' C C1' R N N 0 0.573 0.883 0.365
13 N9 N N9 N Y N 0 1.569 -0.084 -0.103
14 C8 C C8 N Y N 0 1.328 -1.176 -0.886
15 N7 N N7 N Y N 0 2.44 -1.813 -1.109
16 C5 C C5 N Y N 0 3.457 -1.171 -0.485
17 C6 C C6 N N N 0 4.85 -1.4 -0.38
18 O6 O O6 N N N 0 5.369 -2.356 -0.93
19 N1 N N1 N N N 0 5.59 -0.532 0.345
20 C2 C C2 N N N 0 4.999 0.534 0.955
21 N2 N N2 N N N 0 5.776 1.399 1.684
22 N3 N N3 N N N 0 3.707 0.758 0.865
23 C4 C C4 N Y N 0 2.911 -0.056 0.161
24 HOP2 H HOP2 N N N 0 -6.364 -1.854 1.712
25 HOP3 H HOP3 N N Y 0 -4.171 -2.658 -0.411
26 H5' H H5'1 N N N 0 -2.749 0.024 -1.319
27 H5'' H H5'2 N N N 0 -3.632 1.498 -0.855
28 H4' H H4' N N N 0 -1.878 1.949 0.896
29 H3' H H3' N N N 0 -1.059 1.618 -2.046
30 HO3' H HO3' N N Y 0 -1.022 3.995 -1.827
31 H2' H H2'1 N N N 0 1.19 1.929 -1.442
32 H2'' H H2'2 N N N 0 0.765 3.007 -0.075
33 H1' H H1' N N N 0 0.829 1.225 1.368
34 H8 H H8 N N N 0 0.359 -1.467 -1.263
35 HN1 H HN1 N N N 0 6.546 -0.668 0.431
36 HN21 H HN21 N N N 0 6.731 1.248 1.759
37 HN22 H HN22 N N N 0 5.37 2.162 2.124