data_DGP
#
_chem_comp.id DGP
_chem_comp.name "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id DG
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2019-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces DCG
_chem_comp.formula_weight 347.221
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DGP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DGP P P P 0 1 N N N N N N 47.712 3.277 6.013 -5.025 -0.790 0.346 P DGP 1
DGP OP1 O1P O 0 1 N N N N N N 48.568 2.714 7.146 -6.036 0.152 -0.184 OP1 DGP 2
DGP OP2 O2P O 0 1 N N N N N N 46.675 2.318 5.637 -5.526 -1.375 1.760 OP2 DGP 3
DGP OP3 O3P O 0 1 N Y N N N N 47.145 4.706 6.410 -4.821 -2.001 -0.695 OP3 DGP 4
DGP "O5'" "O5'" O 0 1 N N N N N N 48.694 3.629 4.865 -3.627 -0.017 0.550 "O5'" DGP 5
DGP "C5'" "C5'" C 0 1 N N N N N N 50.013 4.115 4.980 -2.976 0.703 -0.498 "C5'" DGP 6
DGP "C4'" "C4'" C 0 1 N N R N N N 50.720 3.618 3.739 -1.678 1.314 0.033 "C4'" DGP 7
DGP "O4'" "O4'" O 0 1 N N N N N N 51.973 4.220 3.532 -0.730 0.278 0.372 "O4'" DGP 8
DGP "C3'" "C3'" C 0 1 N N S N N N 50.750 2.213 3.301 -0.955 2.114 -1.081 "C3'" DGP 9
DGP "O3'" "O3'" O 0 1 N N N N N N 50.023 1.972 2.080 -1.444 3.455 -1.145 "O3'" DGP 10
DGP "C2'" "C2'" C 0 1 N N N N N N 52.232 1.935 3.101 0.516 2.084 -0.600 "C2'" DGP 11
DGP "C1'" "C1'" C 0 1 N N R N N N 52.787 3.365 2.795 0.573 0.883 0.365 "C1'" DGP 12
DGP N9 N9 N 0 1 Y N N N N N 54.239 3.510 2.987 1.569 -0.084 -0.103 N9 DGP 13
DGP C8 C8 C 0 1 Y N N N N N 55.117 3.925 1.994 1.328 -1.176 -0.886 C8 DGP 14
DGP N7 N7 N 0 1 Y N N N N N 56.359 3.867 2.330 2.440 -1.813 -1.109 N7 DGP 15
DGP C5 C5 C 0 1 Y N N N N N 56.337 3.298 3.602 3.457 -1.171 -0.485 C5 DGP 16
DGP C6 C6 C 0 1 N N N N N N 57.429 3.015 4.485 4.850 -1.400 -0.380 C6 DGP 17
DGP O6 O6 O 0 1 N N N N N N 58.624 3.119 4.261 5.369 -2.356 -0.930 O6 DGP 18
DGP N1 N1 N 0 1 N N N N N N 56.961 2.523 5.697 5.590 -0.532 0.345 N1 DGP 19
DGP C2 C2 C 0 1 N N N N N N 55.631 2.328 6.020 4.999 0.534 0.955 C2 DGP 20
DGP N2 N2 N 0 1 N N N N N N 55.416 1.806 7.211 5.776 1.399 1.684 N2 DGP 21
DGP N3 N3 N 0 1 N N N N N N 54.611 2.605 5.221 3.707 0.758 0.865 N3 DGP 22
DGP C4 C4 C 0 1 Y N N N N N 55.044 3.089 4.011 2.911 -0.056 0.161 C4 DGP 23
DGP HOP2 HOP2 H 0 0 N N N N N N 46.750 1.541 6.178 -6.364 -1.854 1.712 HOP2 DGP 24
DGP HOP3 HOP3 H 0 0 N Y N N N N 47.449 4.937 7.280 -4.171 -2.658 -0.411 HOP3 DGP 25
DGP "H5'" "H5'1" H 0 1 N N N N N N 50.026 5.214 5.028 -2.749 0.024 -1.319 "H5'" DGP 26
DGP "H5''" "H5'2" H 0 0 N N N N N N 50.497 3.731 5.890 -3.632 1.498 -0.855 "H5''" DGP 27
DGP "H4'" "H4'" H 0 1 N N N N N N 49.925 3.971 3.066 -1.878 1.949 0.896 "H4'" DGP 28
DGP "H3'" "H3'" H 0 1 N N N N N N 50.263 1.558 4.039 -1.059 1.618 -2.046 "H3'" DGP 29
DGP "HO3'" "HO3'" H 0 0 N Y N N N N 50.081 1.051 1.853 -1.022 3.995 -1.827 "HO3'" DGP 30
DGP "H2'" "H2'1" H 0 1 N N N N N N 52.695 1.494 3.996 1.190 1.929 -1.442 "H2'" DGP 31
DGP "H2''" "H2'2" H 0 0 N N N N N N 52.414 1.234 2.273 0.765 3.007 -0.075 "H2''" DGP 32
DGP "H1'" "H1'" H 0 1 N N N N N N 52.728 3.617 1.726 0.829 1.225 1.368 "H1'" DGP 33
DGP H8 H8 H 0 1 N N N N N N 54.787 4.267 1.024 0.359 -1.467 -1.263 H8 DGP 34
DGP HN1 HN1 H 0 1 N N N N N N 57.641 2.291 6.392 6.546 -0.668 0.431 HN1 DGP 35
DGP HN21 HN21 H 0 0 N N N N N N 54.481 1.618 7.513 6.731 1.248 1.759 HN21 DGP 36
DGP HN22 HN22 H 0 0 N N N N N N 56.187 1.598 7.812 5.370 2.162 2.124 HN22 DGP 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DGP P OP1 DOUB N N 1
DGP P OP2 SING N N 2
DGP P OP3 SING N N 3
DGP P "O5'" SING N N 4
DGP OP2 HOP2 SING N N 5
DGP OP3 HOP3 SING N N 6
DGP "O5'" "C5'" SING N N 7
DGP "C5'" "C4'" SING N N 8
DGP "C5'" "H5'" SING N N 9
DGP "C5'" "H5''" SING N N 10
DGP "C4'" "O4'" SING N N 11
DGP "C4'" "C3'" SING N N 12
DGP "C4'" "H4'" SING N N 13
DGP "O4'" "C1'" SING N N 14
DGP "C3'" "O3'" SING N N 15
DGP "C3'" "C2'" SING N N 16
DGP "C3'" "H3'" SING N N 17
DGP "O3'" "HO3'" SING N N 18
DGP "C2'" "C1'" SING N N 19
DGP "C2'" "H2'" SING N N 20
DGP "C2'" "H2''" SING N N 21
DGP "C1'" N9 SING N N 22
DGP "C1'" "H1'" SING N N 23
DGP N9 C8 SING Y N 24
DGP N9 C4 SING Y N 25
DGP C8 N7 DOUB Y N 26
DGP C8 H8 SING N N 27
DGP N7 C5 SING Y N 28
DGP C5 C6 SING N N 29
DGP C5 C4 DOUB Y N 30
DGP C6 O6 DOUB N N 31
DGP C6 N1 SING N N 32
DGP N1 C2 SING N N 33
DGP N1 HN1 SING N N 34
DGP C2 N2 SING N N 35
DGP C2 N3 DOUB N N 36
DGP N2 HN21 SING N N 37
DGP N2 HN22 SING N N 38
DGP N3 C4 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DGP SMILES ACDLabs 12.01 O=P(O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O
DGP SMILES_CANONICAL CACTVS 3.370 NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3
DGP SMILES CACTVS 3.370 NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3
DGP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N
DGP SMILES "OpenEye OEToolkits" 1.7.0 c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)N
DGP InChI InChI 1.03 InChI=1S/C10H14N5O7P/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(22-6)2-21-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
DGP InChIKey InChI 1.03 LTFMZDNNPPEQNG-KVQBGUIXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DGP "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5'-guanylic acid"
DGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DGP 'Create component' 1999-07-08 RCSB
DGP 'Modify descriptor' 2011-06-04 RCSB
DGP 'Modify linking type' 2019-03-01 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DGP
_pdbe_chem_comp_drugbank_details.drugbank_id DB04457
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2'-Deoxyguanosine-5'-Monophosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 902-04-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id DGP
_pdbe_chem_comp_synonyms.name "2'-Deoxyguanosine-5'-Monophosphate"
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DGP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04457
_pdbe_chem_comp_drugbank_classification.parent "Purine 2'-deoxyribonucleoside monophosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as purine 2'-deoxyribonucleoside monophosphates. These are purine nucleotides with monophosphate group  linked to the ribose moiety lacking a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DGP DB04457 'Thymidylate synthase' Yeast P12461 unknown 1
DGP DB04457 'Thymidylate synthase' 'Escherichia coli (strain K12)' P0A884 unknown 2
DGP DB04457 'Deoxynucleotide monophosphate kinase' 'Enterobacteria phage T4' P04531 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DGP P P 14.817 3.652 1
DGP OP1 O 16.032 4.532 2
DGP OP2 O 15.697 2.437 3
DGP OP3 O 13.938 4.867 4
DGP "O5'" O 13.602 2.772 5
DGP "C5'" C 12.233 3.385 6
DGP "C4'" C 11.018 2.505 7
DGP "O4'" O 11.015 1.005 8
DGP "C3'" C 9.592 2.971 9
DGP "O3'" O 9.131 4.399 10
DGP "C2'" C 8.708 1.759 11
DGP "C1'" C 9.588 0.544 12
DGP N9 N 9.122 -0.882 13
DGP C8 C 9.997 -2.089 14
DGP N7 N 9.122 -3.296 15
DGP C5 C 7.702 -2.839 16
DGP C6 C 6.404 -3.589 17
DGP O6 O 6.404 -5.089 18
DGP N1 N 5.104 -2.839 19
DGP C2 C 5.104 -1.339 20
DGP N2 N 3.805 -0.589 21
DGP N3 N 6.404 -0.589 22
DGP C4 C 7.702 -1.339 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DGP P OP1 DOUBLE NONE 1
DGP P OP2 SINGLE NONE 2
DGP P OP3 SINGLE NONE 3
DGP P "O5'" SINGLE NONE 4
DGP "O5'" "C5'" SINGLE NONE 5
DGP "C4'" "C5'" SINGLE BEGINWEDGE 6
DGP "C4'" "O4'" SINGLE NONE 7
DGP "C4'" "C3'" SINGLE NONE 8
DGP "O4'" "C1'" SINGLE NONE 9
DGP "C3'" "O3'" SINGLE BEGINDASH 10
DGP "C3'" "C2'" SINGLE NONE 11
DGP "C2'" "C1'" SINGLE NONE 12
DGP "C1'" N9 SINGLE BEGINWEDGE 13
DGP N9 C8 SINGLE NONE 14
DGP N9 C4 SINGLE NONE 15
DGP C8 N7 DOUBLE NONE 16
DGP N7 C5 SINGLE NONE 17
DGP C5 C6 SINGLE NONE 18
DGP C5 C4 DOUBLE NONE 19
DGP C6 O6 DOUBLE NONE 20
DGP C6 N1 SINGLE NONE 21
DGP N1 C2 SINGLE NONE 22
DGP C2 N2 SINGLE NONE 23
DGP C2 N3 DOUBLE NONE 24
DGP N3 C4 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DGP MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
DGP deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DGP imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DGP phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DGP purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DGP pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DGP "C4'" S1 1
DGP "O4'" S1 1
DGP "C3'" S1 1
DGP "C2'" S1 1
DGP "C1'" S1 1
DGP N9 S1 1
DGP C8 S1 1
DGP N7 S1 1
DGP C5 S1 1
DGP C6 S1 1
DGP O6 S1 1
DGP N1 S1 1
DGP C2 S1 1
DGP N3 S1 1
DGP C4 S1 1
DGP "C1'" F1 1
DGP "C2'" F1 1
DGP "C3'" F1 1
DGP "O3'" F1 1
DGP "C4'" F1 1
DGP "O4'" F1 1
DGP "C5'" F1 1
DGP "O5'" F1 1
DGP C5 F2 1
DGP C4 F2 1
DGP N9 F2 1
DGP C8 F2 1
DGP N7 F2 1
DGP OP2 F3 1
DGP P F3 1
DGP OP1 F3 1
DGP OP3 F3 1
DGP "O5'" F3 1
DGP N7 F4 1
DGP C8 F4 1
DGP N9 F4 1
DGP C4 F4 1
DGP C5 F4 1
DGP C6 F4 1
DGP N1 F4 1
DGP C2 F4 1
DGP N3 F4 1
DGP C5 F5 1
DGP C6 F5 1
DGP N1 F5 1
DGP C2 F5 1
DGP N3 F5 1
DGP C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DGP
_pdbe_chem_comp_rdkit_properties.exactmw 347.063
_pdbe_chem_comp_rdkit_properties.amw 347.224
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 147.775
_pdbe_chem_comp_rdkit_properties.tpsa 185.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.450
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.169
_pdbe_chem_comp_rdkit_properties.chi0v 11.435
_pdbe_chem_comp_rdkit_properties.chi1v 6.948
_pdbe_chem_comp_rdkit_properties.chi2v 2.689
_pdbe_chem_comp_rdkit_properties.chi3v 2.689
_pdbe_chem_comp_rdkit_properties.chi4v 1.738
_pdbe_chem_comp_rdkit_properties.chi0n 24.541
_pdbe_chem_comp_rdkit_properties.chi1n 12.053
_pdbe_chem_comp_rdkit_properties.chi2n 2.374
_pdbe_chem_comp_rdkit_properties.chi3n 2.374
_pdbe_chem_comp_rdkit_properties.chi4n 1.543
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.820
_pdbe_chem_comp_rdkit_properties.kappa1 6.239
_pdbe_chem_comp_rdkit_properties.kappa2 5.671
_pdbe_chem_comp_rdkit_properties.kappa3 3.268
_pdbe_chem_comp_rdkit_properties.Phi 1.539
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DGP UniChem DrugBank DB04457
DGP UniChem 'Guide to Pharmacology' 5122
DGP UniChem 'KEGG LIGAND' C00362
DGP UniChem ChEBI 16192
DGP UniChem ZINC ZINC000001730395
DGP UniChem fdasrs 7EAM4TG712
DGP UniChem HMDB HMDB0001044
DGP UniChem PubChem 135398597
DGP UniChem NMRShiftDB 60020577
DGP UniChem Nikkaji J195.198J
DGP UniChem 'EPA CompTox Dashboard' DTXSID20896947
DGP UniChem MetaboLights MTBLC16192
DGP UniChem BRENDA 115551
DGP UniChem BRENDA 2466
DGP UniChem BRENDA 262913
DGP UniChem BRENDA 5276
DGP UniChem BRENDA 729
DGP UniChem ChemicalBook CB2692544
DGP UniChem 'Probes And Drugs' PD006198
DGP UniChem ACTor 25656-92-2
DGP UniChem eMolecules 31267396
DGP UniChem SureChEMBL SCHEMBL48232
DGP UniChem 'PubChem TPHARMA' 14945152
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loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DGP P 2.898 1.383 1.768 ETKDGv3 1
DGP OP1 3.701 2.326 0.899 ETKDGv3 2
DGP OP2 3.951 0.380 2.635 ETKDGv3 3
DGP OP3 1.974 2.287 2.859 ETKDGv3 4
DGP "O5'" 1.851 0.453 0.795 ETKDGv3 5
DGP "C5'" 2.630 -0.425 0.015 ETKDGv3 6
DGP "C4'" 1.725 -1.255 -0.902 ETKDGv3 7
DGP "O4'" 0.707 -1.873 -0.154 ETKDGv3 8
DGP "C3'" 1.052 -0.415 -1.984 ETKDGv3 9
DGP "O3'" 1.859 -0.250 -3.125 ETKDGv3 10
DGP "C2'" -0.212 -1.190 -2.272 ETKDGv3 11
DGP "C1'" -0.377 -2.080 -1.036 ETKDGv3 12
DGP N9 -1.632 -1.794 -0.343 ETKDGv3 13
DGP C8 -2.894 -2.432 -0.575 ETKDGv3 14
DGP N7 -3.913 -1.740 -0.159 ETKDGv3 15
DGP C5 -3.335 -0.554 0.376 ETKDGv3 16
DGP C6 -4.008 0.673 0.785 ETKDGv3 17
DGP O6 -5.262 0.738 0.887 ETKDGv3 18
DGP N1 -3.179 1.813 1.051 ETKDGv3 19
DGP C2 -1.749 1.712 0.859 ETKDGv3 20
DGP N2 -0.920 2.856 1.058 ETKDGv3 21
DGP N3 -1.212 0.582 0.477 ETKDGv3 22
DGP C4 -2.033 -0.575 0.257 ETKDGv3 23
DGP HOP2 3.358 -0.176 3.202 ETKDGv3 24
DGP HOP3 2.638 2.749 3.430 ETKDGv3 25
DGP "H5'" 3.357 0.134 -0.617 ETKDGv3 26
DGP "H5''" 3.185 -1.135 0.669 ETKDGv3 27
DGP "H4'" 2.346 -2.053 -1.370 ETKDGv3 28
DGP "H3'" 0.778 0.587 -1.587 ETKDGv3 29
DGP "HO3'" 2.098 -1.149 -3.471 ETKDGv3 30
DGP "H2'" -1.072 -0.501 -2.425 ETKDGv3 31
DGP "H2''" -0.103 -1.825 -3.179 ETKDGv3 32
DGP "H1'" -0.372 -3.149 -1.346 ETKDGv3 33
DGP H8 -2.999 -3.389 -1.070 ETKDGv3 34
DGP HN1 -3.609 2.716 1.354 ETKDGv3 35
DGP HN21 0.105 2.809 0.868 ETKDGv3 36
DGP HN22 -1.335 3.761 1.372 ETKDGv3 37
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