Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CH6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.818 1.468 2.026
2 CE C CE N N N 0 -5.264 3.981 -0.202
3 SD S SD N N N 0 -4.018 2.898 -0.955
4 CG1 C CG1 N N N 0 -3.252 2.097 0.48
5 CB1 C CB1 N N N 0 -2.161 1.135 0.005
6 CA1 C CA1 S N N 0 -1.515 0.459 1.216
7 C1 C C1 N N N 0 -0.527 -0.577 0.745
8 N2 N N2 N N N 0 0.706 -0.323 0.433
9 OH O OH N N N 0 6.137 2.716 -0.159
10 CD2 C CD2 N Y N 0 3.071 0.783 0.028
11 CE2 C CE2 N Y N 0 3.937 1.845 0.077
12 CZ C CZ N Y N 0 5.286 1.66 -0.209
13 CE1 C CE1 N Y N 0 5.765 0.398 -0.544
14 CD1 C CD1 N Y N 0 4.909 -0.672 -0.596
15 CG2 C CG2 N Y N 0 3.549 -0.493 -0.305
16 CB2 C CB2 N N N 0 2.63 -1.632 -0.359
17 N3 N N3 N N N 0 -0.813 -1.905 0.599
18 CA2 C CA2 N N N 0 1.322 -1.481 0.048
19 C2 C C2 N N N 0 0.298 -2.535 0.158
20 O2 O O2 N N N 0 0.428 -3.72 -0.09
21 CA3 C CA3 N N N 0 -2.106 -2.538 0.87
22 C3 C C3 N N N 0 -2.946 -2.521 -0.382
23 O3 O O3 N N N 0 -2.509 -2.031 -1.396
24 OXT O OXT N N Y 0 -4.179 -3.051 -0.37
25 H H HN11 N N N 0 -0.437 1.057 2.865
26 H2 H HN12 N N Y 0 -0.098 1.928 1.489
27 HE1A H HE1A N N N 0 -5.796 4.522 -0.984
28 HE2A H HE2A N N N 0 -5.971 3.379 0.369
29 HE3 H HE3 N N N 0 -4.773 4.692 0.462
30 HG11 H HG11 N N N 0 -2.811 2.855 1.127
31 HG12 H HG12 N N N 0 -4.009 1.542 1.034
32 HB11 H HB11 N N N 0 -2.602 0.377 -0.642
33 HB12 H HB12 N N N 0 -1.404 1.69 -0.549
34 HA1 H HA1 N N N 0 -2.285 -0.021 1.819
35 HOH H HOH N N N 0 6.542 2.854 0.708
36 HD2 H HD2 N N N 0 2.024 0.927 0.25
37 HE2 H HE2 N N N 0 3.57 2.827 0.337
38 HE1 H HE1 N N N 0 6.813 0.261 -0.765
39 HD1 H HD1 N N N 0 5.282 -1.651 -0.858
40 HB2 H HB2 N N N 0 2.977 -2.59 -0.717
41 HA31 H HA31 N N N 0 -1.947 -3.568 1.187
42 HA32 H HA32 N N N 0 -2.621 -1.99 1.66
43 HXT H HXT N N Y 0 -4.68 -3.017 -1.196