data_CH6
#
_chem_comp.id CH6
_chem_comp.name
'{(4Z)-2-[(1S)-1-amino-3-(methylsulfanyl)propyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C16 H19 N3 O4 S'
_chem_comp.mon_nstd_parent_comp_id 'MET, TYR, GLY'
_chem_comp.pdbx_synonyms 'CHROMOPHORE (MET-TYR-GLY)'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-08-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 349.405
_chem_comp.one_letter_code MYG
_chem_comp.three_letter_code CH6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1XA9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CH6 N1 N1 N 0 1 N N N Y Y N 39.940 60.381 12.245 -0.818 1.468 2.026 N1 CH6 1
CH6 CE CE C 0 1 N N N N N N 43.072 60.741 7.716 -5.264 3.981 -0.202 CE CH6 2
CH6 SD SD S 0 1 N N N N N N 41.919 59.411 8.096 -4.018 2.898 -0.955 SD CH6 3
CH6 CG1 CG1 C 0 1 N N N N N N 41.155 60.102 9.574 -3.252 2.097 0.480 CG1 CH6 4
CH6 CB1 CB1 C 0 1 N N N N N N 40.218 59.119 10.254 -2.161 1.135 0.005 CB1 CH6 5
CH6 CA1 CA1 C 0 1 N N S Y N N 39.124 59.930 10.970 -1.515 0.459 1.216 CA1 CH6 6
CH6 C1 C1 C 0 1 N N N Y N N 37.750 59.494 11.357 -0.527 -0.577 0.745 C1 CH6 7
CH6 N2 N2 N 0 1 N N N Y N N 37.282 58.262 11.205 0.706 -0.323 0.433 N2 CH6 8
CH6 OH OH O 0 1 N N N N N N 36.074 51.999 10.244 6.137 2.716 -0.159 OH CH6 9
CH6 CD2 CD2 C 0 1 Y N N N N N 34.301 54.846 11.553 3.071 0.783 0.028 CD2 CH6 10
CH6 CE2 CE2 C 0 1 Y N N N N N 34.539 53.575 11.142 3.937 1.845 0.077 CE2 CH6 11
CH6 CZ CZ C 0 1 Y N N N N N 35.814 53.170 10.579 5.286 1.660 -0.209 CZ CH6 12
CH6 CE1 CE1 C 0 1 Y N N N N N 36.810 54.239 10.458 5.765 0.398 -0.544 CE1 CH6 13
CH6 CD1 CD1 C 0 1 Y N N N N N 36.548 55.508 10.867 4.909 -0.672 -0.596 CD1 CH6 14
CH6 CG2 CG2 C 0 1 Y N N N N N 35.293 55.871 11.454 3.549 -0.493 -0.305 CG2 CH6 15
CH6 CB2 CB2 C 0 1 N N N N N N 35.113 57.194 11.828 2.630 -1.632 -0.359 CB2 CH6 16
CH6 CA2 CA2 C 0 1 N N N Y N N 35.983 58.246 11.735 1.322 -1.481 0.048 CA2 CH6 17
CH6 C2 C2 C 0 1 N N N Y N N 35.617 59.620 12.174 0.298 -2.535 0.158 C2 CH6 18
CH6 O2 O2 O 0 1 N N N Y N N 34.562 60.064 12.632 0.428 -3.720 -0.090 O2 CH6 19
CH6 N3 N3 N 0 1 N N N Y N N 36.782 60.404 11.885 -0.813 -1.905 0.599 N3 CH6 20
CH6 CA3 CA3 C 0 1 N N N Y N N 37.065 61.715 12.314 -2.106 -2.538 0.870 CA3 CH6 21
CH6 C3 C3 C 0 1 N N N Y N Y 36.407 62.864 11.588 -2.946 -2.521 -0.382 C3 CH6 22
CH6 O3 O3 O 0 1 N N N Y N Y 36.171 63.910 12.177 -2.509 -2.031 -1.396 O3 CH6 23
CH6 OXT OXT O 0 1 N Y N Y N Y 36.161 62.704 10.312 -4.179 -3.051 -0.370 OXT CH6 24
CH6 H HN11 H 0 0 N N N Y Y N 40.906 60.476 12.006 -0.437 1.057 2.865 HN11 CH6 25
CH6 H2 HN12 H 0 0 N Y N Y Y N 39.589 61.259 12.572 -0.098 1.928 1.489 HN12 CH6 26
CH6 HE1A HE1A H 0 0 N N N N N N 43.307 61.297 8.636 -5.796 4.522 -0.984 HE1A CH6 27
CH6 HE2A HE2A H 0 0 N N N N N N 43.997 60.316 7.298 -5.971 3.379 0.369 HE2A CH6 28
CH6 HE3 HE3 H 0 1 N N N N N N 42.617 61.422 6.982 -4.773 4.692 0.462 HE3 CH6 29
CH6 HG11 HG11 H 0 0 N N N N N N 41.950 60.374 10.283 -2.811 2.855 1.127 HG11 CH6 30
CH6 HG12 HG12 H 0 0 N N N N N N 40.562 60.977 9.270 -4.009 1.542 1.034 HG12 CH6 31
CH6 HB11 HB11 H 0 0 N N N N N N 39.764 58.452 9.506 -2.602 0.377 -0.642 HB11 CH6 32
CH6 HB12 HB12 H 0 0 N N N N N N 40.770 58.500 10.976 -1.404 1.690 -0.549 HB12 CH6 33
CH6 HA1 HA1 H 0 1 N N N Y N N 38.731 60.612 10.202 -2.285 -0.021 1.819 HA1 CH6 34
CH6 HOH HOH H 0 1 N N N N N N 36.140 51.947 9.298 6.542 2.854 0.708 HOH CH6 35
CH6 HD2 HD2 H 0 1 N N N N N N 33.334 55.091 11.967 2.024 0.927 0.250 HD2 CH6 36
CH6 HE2 HE2 H 0 1 N N N N N N 33.753 52.840 11.237 3.570 2.827 0.337 HE2 CH6 37
CH6 HE1 HE1 H 0 1 N N N N N N 37.777 54.012 10.033 6.813 0.261 -0.765 HE1 CH6 38
CH6 HD1 HD1 H 0 1 N N N N N N 37.308 56.265 10.746 5.282 -1.651 -0.858 HD1 CH6 39
CH6 HB2 HB2 H 0 1 N N N N N N 34.148 57.428 12.254 2.977 -2.590 -0.717 HB2 CH6 40
CH6 HA31 HA31 H 0 0 N N N Y N N 38.151 61.854 12.205 -1.947 -3.568 1.187 HA31 CH6 41
CH6 HA32 HA32 H 0 0 N N N Y N N 36.660 61.765 13.336 -2.621 -1.990 1.660 HA32 CH6 42
CH6 HXT HXT H 0 1 N Y N Y N Y 35.789 63.503 9.958 -4.680 -3.017 -1.196 HXT CH6 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CH6 CE SD SING N N 1
CH6 SD CG1 SING N N 2
CH6 CG1 CB1 SING N N 3
CH6 OH CZ SING N N 4
CH6 CB1 CA1 SING N N 5
CH6 OXT C3 SING N N 6
CH6 CE1 CZ DOUB Y N 7
CH6 CE1 CD1 SING Y N 8
CH6 CZ CE2 SING Y N 9
CH6 CD1 CG2 DOUB Y N 10
CH6 CA1 C1 SING N N 11
CH6 CA1 N1 SING N N 12
CH6 CE2 CD2 DOUB Y N 13
CH6 N2 C1 DOUB N N 14
CH6 N2 CA2 SING N N 15
CH6 C1 N3 SING N N 16
CH6 CG2 CD2 SING Y N 17
CH6 CG2 CB2 SING N N 18
CH6 C3 O3 DOUB N N 19
CH6 C3 CA3 SING N N 20
CH6 CA2 CB2 DOUB N N 21
CH6 CA2 C2 SING N N 22
CH6 N3 C2 SING N N 23
CH6 N3 CA3 SING N N 24
CH6 C2 O2 DOUB N N 25
CH6 N1 H SING N N 26
CH6 N1 H2 SING N N 27
CH6 CE HE1A SING N N 28
CH6 CE HE2A SING N N 29
CH6 CE HE3 SING N N 30
CH6 CG1 HG11 SING N N 31
CH6 CG1 HG12 SING N N 32
CH6 CB1 HB11 SING N N 33
CH6 CB1 HB12 SING N Z 34
CH6 CA1 HA1 SING N N 35
CH6 OH HOH SING N N 36
CH6 CD2 HD2 SING N N 37
CH6 CE2 HE2 SING N N 38
CH6 CE1 HE1 SING N N 39
CH6 CD1 HD1 SING N N 40
CH6 CB2 HB2 SING N N 41
CH6 CA3 HA31 SING N N 42
CH6 CA3 HA32 SING N N 43
CH6 OXT HXT SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CH6 SMILES ACDLabs 10.04 'O=C1C(\N=C(N1CC(=O)O)C(N)CCSC)=C\c2ccc(O)cc2'
CH6 SMILES_CANONICAL CACTVS 3.341 'CSCC[C@H](N)C1=N\C(=C/c2ccc(O)cc2)C(=O)N1CC(O)=O'
CH6 SMILES CACTVS 3.341 'CSCC[CH](N)C1=NC(=Cc2ccc(O)cc2)C(=O)N1CC(O)=O'
CH6 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CSCC[C@@H](C1=N/C(=C\c2ccc(cc2)O)/C(=O)N1CC(=O)O)N'
CH6 SMILES 'OpenEye OEToolkits' 1.5.0 'CSCCC(C1=NC(=Cc2ccc(cc2)O)C(=O)N1CC(=O)O)N'
CH6 InChI InChI 1.03 'InChI=1S/C16H19N3O4S/c1-24-7-6-12(17)15-18-13(16(23)19(15)9-14(21)22)8-10-2-4-11(20)5-3-10/h2-5,8,12,20H,6-7,9,17H2,1H3,(H,21,22)/b13-8-/t12-/m0/s1'
CH6 InChIKey InChI 1.03 NRAOUAPLRQEFMH-OEMOTLHWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CH6 'SYSTEMATIC NAME' ACDLabs 10.04 '{(4Z)-2-[(1S)-1-amino-3-(methylsulfanyl)propyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid'
CH6 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '2-[(4Z)-2-[(1S)-1-amino-3-methylsulfanyl-propyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxo-imidazol-1-yl]ethanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CH6 'Create component' 2004-08-30 RCSB
CH6 'Modify aromatic_flag' 2011-06-04 RCSB
CH6 'Modify descriptor' 2011-06-04 RCSB
CH6 'Modify synonyms' 2021-03-01 PDBE
CH6 'Modify backbone' 2023-11-03 PDBE
CH6 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CH6
_pdbx_chem_comp_synonyms.name 'CHROMOPHORE (MET-TYR-GLY)'
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id CH6
_pdbx_chem_comp_pcm.modified_residue_id 'MET, TYR, GLY'
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Chromophore/chromophore-like
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id CH6
_pdbe_chem_comp_drugbank_details.drugbank_id DB03391
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Chromophore (Met-Tyr-Gly)'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CH6 'CHROMOPHORE (MET-TYR-GLY)' wwPDB ?
CH6 'Chromophore (Met-Tyr-Gly)' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CH6
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03391
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CH6 N1 N 10.345 1.914 1
CH6 CE C 13.668 -2.354 2
CH6 SD S 12.176 -2.197 3
CH6 CG1 C 11.566 -0.827 4
CH6 CB1 C 10.074 -0.670 5
CH6 CA1 C 9.464 0.700 6
CH6 C1 C 7.972 0.857 7
CH6 N2 N 6.968 -0.258 8
CH6 OH O 4.299 -6.398 9
CH6 CD2 C 5.598 -2.648 10
CH6 CE2 C 5.598 -4.148 11
CH6 CZ C 4.299 -4.898 12
CH6 CE1 C 3.000 -4.148 13
CH6 CD1 C 3.000 -2.648 14
CH6 CG2 C 4.299 -1.898 15
CH6 CB2 C 4.299 -0.398 16
CH6 CA2 C 5.598 0.352 17
CH6 C2 C 5.755 1.844 18
CH6 O2 O 4.640 2.848 19
CH6 N3 N 7.222 2.156 20
CH6 CA3 C 7.832 3.526 21
CH6 C3 C 6.950 4.740 22
CH6 O3 O 5.459 4.583 23
CH6 OXT O 7.561 6.110 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CH6 CE SD SINGLE NONE 1
CH6 SD CG1 SINGLE NONE 2
CH6 CG1 CB1 SINGLE NONE 3
CH6 OH CZ SINGLE NONE 4
CH6 CB1 CA1 SINGLE NONE 5
CH6 OXT C3 SINGLE NONE 6
CH6 CE1 CZ DOUBLE NONE 7
CH6 CE1 CD1 SINGLE NONE 8
CH6 CZ CE2 SINGLE NONE 9
CH6 CD1 CG2 DOUBLE NONE 10
CH6 CA1 C1 SINGLE NONE 11
CH6 CA1 N1 SINGLE BEGINWEDGE 12
CH6 CE2 CD2 DOUBLE NONE 13
CH6 N2 C1 DOUBLE NONE 14
CH6 N2 CA2 SINGLE ENDUPRIGHT 15
CH6 C1 N3 SINGLE NONE 16
CH6 CG2 CD2 SINGLE NONE 17
CH6 CG2 CB2 SINGLE ENDUPRIGHT 18
CH6 C3 O3 DOUBLE NONE 19
CH6 C3 CA3 SINGLE NONE 20
CH6 CA2 CB2 DOUBLE NONE 21
CH6 CA2 C2 SINGLE ENDUPRIGHT 22
CH6 N3 C2 SINGLE NONE 23
CH6 N3 CA3 SINGLE NONE 24
CH6 C2 O2 DOUBLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CH6 MurckoScaffold S1 scaffold O=C1NC=N/C1=C\c1ccccc1 InChI=1S/C10H8N2O/c13-10-9(11-7-12-10)6-8-4-2-1-3-5-8/h1-7H,(H,11,12,13)/b9-6- CQGIJPFYWRPMRO-TWGQIWQCSA-N
CH6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CH6 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CH6 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CH6 C1 S1 1
CH6 N2 S1 1
CH6 CD2 S1 1
CH6 CE2 S1 1
CH6 CZ S1 1
CH6 CE1 S1 1
CH6 CD1 S1 1
CH6 CG2 S1 1
CH6 CB2 S1 1
CH6 CA2 S1 1
CH6 C2 S1 1
CH6 O2 S1 1
CH6 N3 S1 1
CH6 N3 F1 1
CH6 C2 F1 1
CH6 O2 F1 1
CH6 CA2 F1 1
CH6 O2 F2 1
CH6 C2 F2 1
CH6 CA2 F2 1
CH6 N2 F2 1
CH6 O3 F2 2
CH6 C3 F2 2
CH6 CA3 F2 2
CH6 N3 F2 2
CH6 CD2 F3 1
CH6 CE2 F3 1
CH6 CZ F3 1
CH6 CE1 F3 1
CH6 CD1 F3 1
CH6 CG2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CH6
_pdbe_chem_comp_rdkit_properties.exactmw 349.110
_pdbe_chem_comp_rdkit_properties.amw 349.412
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.312
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 170.399
_pdbe_chem_comp_rdkit_properties.tpsa 116.220
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.622
_pdbe_chem_comp_rdkit_properties.CrippenMR 92.966
_pdbe_chem_comp_rdkit_properties.chi0v 12.199
_pdbe_chem_comp_rdkit_properties.chi1v 6.633
_pdbe_chem_comp_rdkit_properties.chi2v 2.520
_pdbe_chem_comp_rdkit_properties.chi3v 2.520
_pdbe_chem_comp_rdkit_properties.chi4v 1.600
_pdbe_chem_comp_rdkit_properties.chi0n 30.383
_pdbe_chem_comp_rdkit_properties.chi1n 15.027
_pdbe_chem_comp_rdkit_properties.chi2n 2.316
_pdbe_chem_comp_rdkit_properties.chi3n 2.316
_pdbe_chem_comp_rdkit_properties.chi4n 1.453
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.320
_pdbe_chem_comp_rdkit_properties.kappa1 5.337
_pdbe_chem_comp_rdkit_properties.kappa2 7.981
_pdbe_chem_comp_rdkit_properties.kappa3 4.361
_pdbe_chem_comp_rdkit_properties.Phi 1.775
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CH6 UniChem DrugBank DB03391
CH6 UniChem ZINC ZINC000058631502
CH6 UniChem PubChem 49866789
CH6 UniChem 'Probes And Drugs' PD059659
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CH6 N1 -1.891 -0.565 1.428 ETKDGv3 1
CH6 CE -5.363 3.282 -0.315 ETKDGv3 2
CH6 SD -3.642 3.118 -0.885 ETKDGv3 3
CH6 CG1 -3.428 1.429 -0.227 ETKDGv3 4
CH6 CB1 -2.016 0.928 -0.537 ETKDGv3 5
CH6 CA1 -1.792 -0.510 -0.033 ETKDGv3 6
CH6 C1 -0.447 -1.022 -0.493 ETKDGv3 7
CH6 N2 0.663 -0.429 -0.158 ETKDGv3 8
CH6 OH 5.171 3.499 2.333 ETKDGv3 9
CH6 CD2 2.896 1.553 0.165 ETKDGv3 10
CH6 CE2 3.409 2.583 0.849 ETKDGv3 11
CH6 CZ 4.657 2.417 1.621 ETKDGv3 12
CH6 CE1 5.284 1.230 1.624 ETKDGv3 13
CH6 CD1 4.722 0.092 0.867 ETKDGv3 14
CH6 CG2 3.569 0.225 0.188 ETKDGv3 15
CH6 CB2 3.037 -0.932 -0.568 ETKDGv3 16
CH6 CA2 1.732 -1.177 -0.732 ETKDGv3 17
CH6 C2 1.144 -2.297 -1.428 ETKDGv3 18
CH6 O2 1.755 -3.231 -2.014 ETKDGv3 19
CH6 N3 -0.265 -2.193 -1.311 ETKDGv3 20
CH6 CA3 -1.227 -3.259 -1.585 ETKDGv3 21
CH6 C3 -1.472 -4.065 -0.350 ETKDGv3 22
CH6 O3 -0.586 -4.856 0.072 ETKDGv3 23
CH6 OXT -2.667 -3.923 0.347 ETKDGv3 24
CH6 H -1.765 -1.557 1.735 ETKDGv3 25
CH6 H2 -1.116 -0.005 1.854 ETKDGv3 26
CH6 HE1A -5.748 4.280 -0.608 ETKDGv3 27
CH6 HE2A -5.997 2.501 -0.785 ETKDGv3 28
CH6 HE3 -5.410 3.189 0.790 ETKDGv3 29
CH6 HG11 -3.591 1.444 0.872 ETKDGv3 30
CH6 HG12 -4.176 0.756 -0.699 ETKDGv3 31
CH6 HB11 -1.864 0.954 -1.639 ETKDGv3 32
CH6 HB12 -1.272 1.613 -0.071 ETKDGv3 33
CH6 HA1 -2.594 -1.147 -0.459 ETKDGv3 34
CH6 HOH 6.025 3.425 2.873 ETKDGv3 35
CH6 HD2 2.006 1.711 -0.429 ETKDGv3 36
CH6 HE2 2.918 3.548 0.822 ETKDGv3 37
CH6 HE1 6.202 1.095 2.181 ETKDGv3 38
CH6 HD1 5.248 -0.856 0.884 ETKDGv3 39
CH6 HB2 3.747 -1.648 -0.965 ETKDGv3 40
CH6 HA31 -2.179 -2.825 -1.955 ETKDGv3 41
CH6 HA32 -0.838 -3.923 -2.386 ETKDGv3 42
CH6 HXT -2.841 -4.452 1.193 ETKDGv3 43
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