Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BGO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C' C C' N N N 0 -2.5 -2.64 -0.349
2 N1 N N1 N N N 0 -3.874 5.65 0.351
3 C2 C C2 N N N 0 -4.156 4.415 0.854
4 N2 N N2 N N N 0 -5.365 4.206 1.468
5 N3 N N3 N N N 0 -3.303 3.419 0.769
6 C4 C C4 N Y N 0 -2.112 3.576 0.179
7 C5 C C5 N Y N 0 -1.764 4.821 -0.358
8 C6 C C6 N N N 0 -2.691 5.885 -0.259
9 O6 O O6 N N N 0 -2.429 6.986 -0.713
10 N7 N N7 N Y N 0 -0.521 4.698 -0.886
11 C8 C C8 N Y N 0 -0.097 3.481 -0.709
12 N9 N N9 N Y N 0 -1.046 2.75 -0.055
13 PA P PA N N N 0 4.313 -1.058 -0.418
14 PB P PB N N N 0 6.987 -0.164 0.496
15 C1' C C1' N Y N 0 -3.343 -3.57 0.421
16 O1' O O1' N N N 0 -2.562 -2.626 -1.562
17 O1A O O1A N N N 0 4.509 -0.417 -1.738
18 C1B C C1B R N N 0 -0.944 1.34 0.326
19 O1B O O1B N N N 0 7.835 -1.532 0.455
20 C2' C C2' N Y N 0 -4.303 -4.36 -0.232
21 N2' N N2' N N N 0 -4.462 -4.269 -1.608
22 O2' O O2' N N N 0 -3.0 0.294 -0.512
23 O2A O O2A N N N 0 4.464 -2.654 -0.568
24 C2B C C2B R N N 0 -1.598 0.434 -0.748
25 O2B O O2B N N N 0 7.23 0.605 -0.745
26 C3' C C3' N Y N 0 -5.092 -5.234 0.506
27 O3' O O3' N N N 0 -1.664 -1.8 0.293
28 O3A O O3A N N N 0 5.419 -0.509 0.615
29 C3B C C3B S N N 0 -0.863 -0.911 -0.53
30 O3B O O3B N N N 0 7.442 0.712 1.768
31 C4' C C4' N Y N 0 -4.931 -5.323 1.873
32 O4' O O4' N N N 0 0.436 0.914 0.332
33 C4B C C4B R N N 0 0.433 -0.518 0.205
34 C5' C C5' N Y N 0 -3.986 -4.544 2.522
35 O5' O O5' N N N 0 2.842 -0.708 0.134
36 C5B C C5B N N N 0 1.649 -0.971 -0.607
37 C6' C C6' N Y N 0 -3.19 -3.676 1.807
38 CM' C CM' N N N 0 -5.544 -5.001 -2.271
39 HN1 H HN1 N N N 0 -4.527 6.363 0.427
40 HN2 H HN2 N N N 0 -6.005 4.932 1.539
41 HN2A H HN2A N N N 0 -5.58 3.333 1.831
42 H8 H H8 N N N 0 0.863 3.105 -1.032
43 H1B H H1B N N N 0 -1.403 1.173 1.301
44 HO1B H HO1B N N N 0 7.724 -2.087 1.239
45 HN2' H HN2' N N N 0 -3.856 -3.721 -2.131
46 H3B H H3B N N N 0 -0.635 -1.381 -1.486
47 HO2' H HO2' N N N 0 -3.49 1.126 -0.548
48 HO2A H HO2A N N N 0 4.347 -3.139 0.26
49 H2B H H2B N N N 0 -1.411 0.822 -1.75
50 H3' H H3' N N N 0 -5.831 -5.844 0.009
51 HO3B H HO3B N N N 0 8.378 0.956 1.762
52 H4' H H4' N N N 0 -5.547 -6.004 2.442
53 H4B H H4B N N N 0 0.453 -0.978 1.193
54 H5' H H5' N N N 0 -3.869 -4.621 3.592
55 H5B H H5B N N N 0 1.574 -2.04 -0.808
56 H5BA H H5BA N N N 0 1.679 -0.425 -1.55
57 H6' H H6' N N N 0 -2.452 -3.075 2.317
58 HM' H HM' N N N 0 -5.424 -6.069 -2.089
59 HM'A H HM'A N N N 0 -6.503 -4.67 -1.872
60 HM'B H HM'B N N N 0 -5.51 -4.808 -3.343