data_BGO
#
_chem_comp.id BGO
_chem_comp.name "3'-O-(N-methylanthraniloyl)guanosine-5'-diphosphate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H22 N6 O12 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-08-16
_chem_comp.pdbx_modified_date 2011-12-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 576.348
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BGO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3TAH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BGO "C'" "C'" C 0 1 N N N N N N 21.458 -4.568 -70.692 -2.500 -2.640 -0.349 "C'" BGO 1
BGO N1 N1 N 0 1 N N N N N N 18.769 -9.956 -64.442 -3.874 5.650 0.351 N1 BGO 2
BGO C2 C2 C 0 1 N N N N N N 19.105 -9.894 -65.808 -4.156 4.415 0.854 C2 BGO 3
BGO N2 N2 N 0 1 N N N N N N 18.823 -10.952 -66.580 -5.365 4.206 1.468 N2 BGO 4
BGO N3 N3 N 0 1 N N N N N N 19.685 -8.780 -66.295 -3.303 3.419 0.769 N3 BGO 5
BGO C4 C4 C 0 1 Y N N N N N 19.930 -7.740 -65.464 -2.112 3.576 0.179 C4 BGO 6
BGO C5 C5 C 0 1 Y N N N N N 19.620 -7.755 -64.102 -1.764 4.821 -0.358 C5 BGO 7
BGO C6 C6 C 0 1 N N N N N N 19.024 -8.893 -63.585 -2.691 5.885 -0.259 C6 BGO 8
BGO O6 O6 O 0 1 N N N N N N 18.731 -8.986 -62.393 -2.429 6.986 -0.713 O6 BGO 9
BGO N7 N7 N 0 1 Y N N N N N 20.000 -6.592 -63.567 -0.521 4.698 -0.886 N7 BGO 10
BGO C8 C8 C 0 1 Y N N N N N 20.533 -5.850 -64.546 -0.097 3.481 -0.709 C8 BGO 11
BGO N9 N9 N 0 1 Y N N N N N 20.471 -6.559 -65.684 -1.046 2.750 -0.055 N9 BGO 12
BGO PA PA P 0 1 N N N N N N 22.930 -1.939 -65.105 4.313 -1.058 -0.418 PA BGO 13
BGO PB PB P 0 1 N N N N N N 24.966 -1.003 -63.367 6.987 -0.164 0.496 PB BGO 14
BGO "C1'" "C1'" C 0 1 Y N N N N N 21.623 -5.388 -71.983 -3.343 -3.570 0.421 "C1'" BGO 15
BGO "O1'" "O1'" O 0 1 N N N N N N 20.840 -3.507 -70.654 -2.562 -2.626 -1.562 "O1'" BGO 16
BGO O1A O1A O 0 1 N N N N N N 21.738 -1.724 -64.275 4.509 -0.417 -1.738 O1A BGO 17
BGO C1B C1B C 0 1 N N R N N N 20.932 -6.267 -67.019 -0.944 1.340 0.326 C1B BGO 18
BGO O1B O1B O 0 1 N N N N N N 25.490 -1.770 -62.227 7.835 -1.532 0.455 O1B BGO 19
BGO "C2'" "C2'" C 0 1 Y N N N N N 20.859 -5.141 -73.142 -4.303 -4.360 -0.232 "C2'" BGO 20
BGO "N2'" "N2'" N 0 1 N N N N N N 19.951 -4.171 -73.203 -4.462 -4.269 -1.608 "N2'" BGO 21
BGO "O2'" "O2'" O 0 1 N N N N N N 19.569 -4.856 -68.334 -3.000 0.294 -0.512 "O2'" BGO 22
BGO O2A O2A O 0 1 N N N N N N 23.255 -0.951 -66.163 4.464 -2.654 -0.568 O2A BGO 23
BGO C2B C2B C 0 1 N N R N N N 20.834 -4.992 -67.660 -1.598 0.434 -0.748 C2B BGO 24
BGO O2B O2B O 0 1 N N N N N N 24.083 0.090 -63.022 7.230 0.605 -0.745 O2B BGO 25
BGO "C3'" "C3'" C 0 1 Y N N N N N 21.070 -5.946 -74.265 -5.092 -5.234 0.506 "C3'" BGO 26
BGO "O3'" "O3'" O 0 1 N N N N N N 21.997 -5.069 -69.551 -1.664 -1.800 0.293 "O3'" BGO 27
BGO O3A O3A O 0 1 N N N N N N 24.206 -2.172 -64.233 5.419 -0.509 0.615 O3A BGO 28
BGO C3B C3B C 0 1 N N S N N N 21.876 -4.262 -68.359 -0.863 -0.911 -0.530 C3B BGO 29
BGO O3B O3B O 0 1 N N N N N N 25.970 -0.653 -64.407 7.442 0.712 1.768 O3B BGO 30
BGO "C4'" "C4'" C 0 1 Y N N N N N 22.007 -6.963 -74.257 -4.931 -5.323 1.873 "C4'" BGO 31
BGO "O4'" "O4'" O 0 1 N N N N N N 22.405 -6.156 -66.837 0.436 0.914 0.332 "O4'" BGO 32
BGO C4B C4B C 0 1 N N R N N N 22.971 -4.954 -67.543 0.433 -0.518 0.205 C4B BGO 33
BGO "C5'" "C5'" C 0 1 Y N N N N N 22.765 -7.218 -73.117 -3.986 -4.544 2.522 "C5'" BGO 34
BGO "O5'" "O5'" O 0 1 N N N N N N 22.636 -3.371 -65.728 2.842 -0.708 0.134 "O5'" BGO 35
BGO C5B C5B C 0 1 N N N N N N 23.619 -4.117 -66.408 1.649 -0.971 -0.607 C5B BGO 36
BGO "C6'" "C6'" C 0 1 Y N N N N N 22.563 -6.424 -71.983 -3.190 -3.676 1.807 "C6'" BGO 37
BGO "CM'" "CM'" C 0 1 N N N N N N 19.343 -3.740 -74.478 -5.544 -5.001 -2.271 "CM'" BGO 38
BGO HN1 HN1 H 0 1 N N N N N N 18.338 -10.783 -64.081 -4.527 6.363 0.427 HN1 BGO 39
BGO HN2 HN2 H 0 1 N N N N N N 19.044 -10.932 -67.555 -6.005 4.932 1.539 HN2 BGO 40
BGO HN2A HN2A H 0 0 N N N N N N 18.392 -11.761 -66.181 -5.580 3.333 1.831 HN2A BGO 41
BGO H8 H8 H 0 1 N N N N N N 20.941 -4.856 -64.439 0.863 3.105 -1.032 H8 BGO 42
BGO H1B H1B H 0 1 N N N N N N 20.353 -7.002 -67.597 -1.403 1.173 1.301 H1B BGO 43
BGO HO1B HO1B H 0 0 N N N N N N 25.149 -1.408 -61.418 7.724 -2.087 1.239 HO1B BGO 44
BGO "HN2'" "HN2'" H 0 0 N N N N N N 19.188 -4.485 -72.637 -3.856 -3.721 -2.131 "HN2'" BGO 45
BGO "HO2'" "HO2'" H 0 0 N N N N N N 19.700 -4.422 -69.169 -3.490 1.126 -0.548 "HO2'" BGO 46
BGO HO2A HO2A H 0 0 N N N N N N 22.602 -0.261 -66.164 4.347 -3.139 0.260 HO2A BGO 47
BGO H2B H2B H 0 1 N N N N N N 21.006 -4.443 -66.723 -1.411 0.822 -1.750 H2B BGO 48
BGO "H3'" "H3'" H 0 1 N N N N N N 20.489 -5.770 -75.158 -5.831 -5.844 0.009 "H3'" BGO 49
BGO H3B H3B H 0 1 N N N N N N 21.818 -3.172 -68.495 -0.635 -1.381 -1.486 H3B BGO 50
BGO HO3B HO3B H 0 0 N N N N N N 25.852 0.252 -64.670 8.378 0.956 1.762 HO3B BGO 51
BGO "H4'" "H4'" H 0 1 N N N N N N 22.152 -7.564 -75.142 -5.547 -6.004 2.442 "H4'" BGO 52
BGO H4B H4B H 0 1 N N N N N N 23.737 -5.173 -68.302 0.453 -0.978 1.193 H4B BGO 53
BGO "H5'" "H5'" H 0 1 N N N N N N 23.495 -8.014 -73.108 -3.869 -4.621 3.592 "H5'" BGO 54
BGO H5B H5B H 0 1 N N N N N N 24.115 -4.794 -65.697 1.574 -2.040 -0.808 H5B BGO 55
BGO H5BA H5BA H 0 0 N N N N N N 24.358 -3.429 -66.843 1.679 -0.425 -1.550 H5BA BGO 56
BGO "H6'" "H6'" H 0 1 N N N N N N 23.143 -6.614 -71.092 -2.452 -3.075 2.317 "H6'" BGO 57
BGO "HM'" "HM'" H 0 1 N N N N N N 18.624 -2.930 -74.287 -5.424 -6.069 -2.089 "HM'" BGO 58
BGO "HM'A" "HM'A" H 0 0 N N N N N N 20.130 -3.379 -75.156 -6.503 -4.670 -1.872 "HM'A" BGO 59
BGO "HM'B" "HM'B" H 0 0 N N N N N N 18.822 -4.591 -74.941 -5.510 -4.808 -3.343 "HM'B" BGO 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BGO "C'" "C1'" SING N N 1
BGO "C'" "O1'" DOUB N N 2
BGO "C'" "O3'" SING N N 3
BGO N1 C2 SING N N 4
BGO N1 C6 SING N N 5
BGO C2 N2 SING N N 6
BGO C2 N3 DOUB N N 7
BGO N3 C4 SING N N 8
BGO C4 C5 DOUB Y N 9
BGO C4 N9 SING Y N 10
BGO C5 C6 SING N N 11
BGO C5 N7 SING Y N 12
BGO C6 O6 DOUB N N 13
BGO N7 C8 DOUB Y N 14
BGO C8 N9 SING Y N 15
BGO N9 C1B SING N N 16
BGO PA O1A DOUB N N 17
BGO PA O2A SING N N 18
BGO PA O3A SING N N 19
BGO PA "O5'" SING N N 20
BGO PB O1B SING N N 21
BGO PB O2B DOUB N N 22
BGO PB O3A SING N N 23
BGO PB O3B SING N N 24
BGO "C1'" "C2'" DOUB Y N 25
BGO "C1'" "C6'" SING Y N 26
BGO C1B C2B SING N N 27
BGO C1B "O4'" SING N N 28
BGO "C2'" "N2'" SING N N 29
BGO "C2'" "C3'" SING Y N 30
BGO "N2'" "CM'" SING N N 31
BGO "O2'" C2B SING N N 32
BGO C2B C3B SING N N 33
BGO "C3'" "C4'" DOUB Y N 34
BGO "O3'" C3B SING N N 35
BGO C3B C4B SING N N 36
BGO "C4'" "C5'" SING Y N 37
BGO "O4'" C4B SING N N 38
BGO C4B C5B SING N N 39
BGO "C5'" "C6'" DOUB Y N 40
BGO "O5'" C5B SING N N 41
BGO N1 HN1 SING N N 42
BGO N2 HN2 SING N N 43
BGO N2 HN2A SING N N 44
BGO C8 H8 SING N N 45
BGO C1B H1B SING N N 46
BGO O1B HO1B SING N N 47
BGO "N2'" "HN2'" SING N N 48
BGO "O2'" "HO2'" SING N N 49
BGO O2A HO2A SING N N 50
BGO C2B H2B SING N N 51
BGO "C3'" "H3'" SING N N 52
BGO C3B H3B SING N N 53
BGO O3B HO3B SING N N 54
BGO "C4'" "H4'" SING N N 55
BGO C4B H4B SING N N 56
BGO "C5'" "H5'" SING N N 57
BGO C5B H5B SING N N 58
BGO C5B H5BA SING N N 59
BGO "C6'" "H6'" SING N N 60
BGO "CM'" "HM'" SING N N 61
BGO "CM'" "HM'A" SING N N 62
BGO "CM'" "HM'B" SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BGO SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)OCC4OC(n2cnc1c2N=C(N)NC1=O)C(O)C4OC(=O)c3ccccc3NC
BGO InChI InChI 1.03 InChI=1S/C18H22N6O12P2/c1-20-9-5-3-2-4-8(9)17(27)35-13-10(6-33-38(31,32)36-37(28,29)30)34-16(12(13)25)24-7-21-11-14(24)22-18(19)23-15(11)26/h2-5,7,10,12-13,16,20,25H,6H2,1H3,(H,31,32)(H2,28,29,30)(H3,19,22,23,26)/t10-,12-,13-,16-/m1/s1
BGO InChIKey InChI 1.03 DAJQUPOUYBWRQQ-XNIJJKJLSA-N
BGO SMILES_CANONICAL CACTVS 3.370 CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N
BGO SMILES CACTVS 3.370 CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N
BGO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3N=C(NC4=O)N)CO[P@](=O)(O)OP(=O)(O)O
BGO SMILES "OpenEye OEToolkits" 1.7.2 CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3N=C(NC4=O)N)COP(=O)(O)OP(=O)(O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGO "SYSTEMATIC NAME" ACDLabs 12.01 "3'-O-[2-(methylamino)benzoyl]guanosine 5'-(trihydrogen diphosphate)"
BGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate"
#
_pdbx_chem_comp_audit.comp_id BGO
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-08-16
_pdbx_chem_comp_audit.processing_site PDBJ
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BGO "C'" C 10.136 3.159 1
BGO N1 N 5.104 -5.191 2
BGO C2 C 5.104 -3.691 3
BGO N2 N 3.805 -2.941 4
BGO N3 N 6.404 -2.941 5
BGO C4 C 7.702 -3.691 6
BGO C5 C 7.702 -5.191 7
BGO C6 C 6.404 -5.941 8
BGO O6 O 6.404 -7.441 9
BGO N7 N 9.122 -5.648 10
BGO C8 C 9.997 -4.441 11
BGO N9 N 9.122 -3.234 12
BGO PA P 14.817 1.299 13
BGO PB P 17.401 1.567 14
BGO "C1'" C 9.676 4.586 15
BGO "O1'" O 11.603 2.845 16
BGO O1A O 15.697 0.084 17
BGO C1B C 9.588 -1.808 18
BGO O1B O 18.771 0.954 19
BGO "C2'" C 10.681 5.699 20
BGO "N2'" N 12.148 5.385 21
BGO "O2'" O 7.208 -0.591 22
BGO O2A O 13.938 2.514 23
BGO C2B C 8.708 -0.593 24
BGO O2B O 18.014 2.936 25
BGO "C3'" C 10.220 7.127 26
BGO "O3'" O 9.131 2.046 27
BGO O3A O 16.032 2.179 28
BGO C3B C 9.592 0.619 29
BGO O3B O 16.789 0.197 30
BGO "C4'" C 8.753 7.441 31
BGO "O4'" O 11.015 -1.347 32
BGO C4B C 11.018 0.153 33
BGO "C5'" C 7.748 6.328 34
BGO "O5'" O 13.602 0.420 35
BGO C5B C 12.233 1.032 36
BGO "C6'" C 8.209 4.901 37
BGO "CM'" C 13.153 6.498 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BGO "C'" "C1'" SINGLE NONE 1
BGO "C'" "O1'" DOUBLE NONE 2
BGO "C'" "O3'" SINGLE NONE 3
BGO N1 C2 SINGLE NONE 4
BGO N1 C6 SINGLE NONE 5
BGO C2 N2 SINGLE NONE 6
BGO C2 N3 DOUBLE NONE 7
BGO N3 C4 SINGLE NONE 8
BGO C4 C5 DOUBLE NONE 9
BGO C4 N9 SINGLE NONE 10
BGO C5 C6 SINGLE NONE 11
BGO C5 N7 SINGLE NONE 12
BGO C6 O6 DOUBLE NONE 13
BGO N7 C8 DOUBLE NONE 14
BGO C8 N9 SINGLE NONE 15
BGO C1B N9 SINGLE BEGINWEDGE 16
BGO PA O1A DOUBLE NONE 17
BGO PA O2A SINGLE BEGINWEDGE 18
BGO PA O3A SINGLE NONE 19
BGO PA "O5'" SINGLE NONE 20
BGO PB O1B SINGLE NONE 21
BGO PB O2B DOUBLE NONE 22
BGO PB O3A SINGLE NONE 23
BGO PB O3B SINGLE NONE 24
BGO "C1'" "C2'" DOUBLE NONE 25
BGO "C1'" "C6'" SINGLE NONE 26
BGO C1B C2B SINGLE NONE 27
BGO C1B "O4'" SINGLE NONE 28
BGO "C2'" "N2'" SINGLE NONE 29
BGO "C2'" "C3'" SINGLE NONE 30
BGO "N2'" "CM'" SINGLE NONE 31
BGO C2B "O2'" SINGLE BEGINDASH 32
BGO C2B C3B SINGLE NONE 33
BGO "C3'" "C4'" DOUBLE NONE 34
BGO C3B "O3'" SINGLE BEGINDASH 35
BGO C3B C4B SINGLE NONE 36
BGO "C4'" "C5'" SINGLE NONE 37
BGO "O4'" C4B SINGLE NONE 38
BGO C4B C5B SINGLE BEGINWEDGE 39
BGO "C5'" "C6'" DOUBLE NONE 40
BGO "O5'" C5B SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BGO MurckoScaffold S1 scaffold 'O=C(O[C@@H]1CO[C@@H](n2cnc3c(=O)[nH]cnc32)C1)c1ccccc1' InChI=1S/C16H14N4O4/c21-15-13-14(17-8-18-15)20(9-19-13)12-6-11(7-23-12)24-16(22)10-4-2-1-3-5-10/h1-5,8-9,11-12H,6-7H2,(H,17,18,21)/t11-,12+/m0/s1 KVRRTZAVWLYYRC-NWDGAFQWSA-N
BGO imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
BGO phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BGO phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
BGO purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
BGO pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
BGO ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BGO "C'" S1 1
BGO N1 S1 1
BGO C2 S1 1
BGO N3 S1 1
BGO C4 S1 1
BGO C5 S1 1
BGO C6 S1 1
BGO O6 S1 1
BGO N7 S1 1
BGO C8 S1 1
BGO N9 S1 1
BGO "C1'" S1 1
BGO "O1'" S1 1
BGO C1B S1 1
BGO "C2'" S1 1
BGO C2B S1 1
BGO "C3'" S1 1
BGO "O3'" S1 1
BGO C3B S1 1
BGO "C4'" S1 1
BGO "O4'" S1 1
BGO C4B S1 1
BGO "C5'" S1 1
BGO "C6'" S1 1
BGO C4 F1 1
BGO C5 F1 1
BGO N7 F1 1
BGO C8 F1 1
BGO N9 F1 1
BGO "C1'" F2 1
BGO "C2'" F2 1
BGO "C3'" F2 1
BGO "C4'" F2 1
BGO "C5'" F2 1
BGO "C6'" F2 1
BGO O1B F3 1
BGO PB F3 1
BGO O2B F3 1
BGO O3A F3 1
BGO O3B F3 1
BGO O2A F3 2
BGO PA F3 2
BGO O1A F3 2
BGO O3A F3 2
BGO "O5'" F3 2
BGO N7 F4 1
BGO C8 F4 1
BGO N9 F4 1
BGO C4 F4 1
BGO C5 F4 1
BGO C6 F4 1
BGO N1 F4 1
BGO C2 F4 1
BGO N3 F4 1
BGO C5 F5 1
BGO C4 F5 1
BGO N3 F5 1
BGO C2 F5 1
BGO N1 F5 1
BGO C6 F5 1
BGO C2B F6 1
BGO C3B F6 1
BGO C4B F6 1
BGO "O4'" F6 1
BGO C1B F6 1
BGO C5B F6 1
BGO "O5'" F6 1
BGO "O3'" F6 1
BGO "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BGO
_pdbe_chem_comp_rdkit_properties.exactmw 576.077
_pdbe_chem_comp_rdkit_properties.amw 576.352
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 243.228
_pdbe_chem_comp_rdkit_properties.tpsa 270.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.891
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.564
_pdbe_chem_comp_rdkit_properties.chi0v 19.266
_pdbe_chem_comp_rdkit_properties.chi1v 11.948
_pdbe_chem_comp_rdkit_properties.chi2v 5.847
_pdbe_chem_comp_rdkit_properties.chi3v 5.847
_pdbe_chem_comp_rdkit_properties.chi4v 3.877
_pdbe_chem_comp_rdkit_properties.chi0n 39.477
_pdbe_chem_comp_rdkit_properties.chi1n 19.449
_pdbe_chem_comp_rdkit_properties.chi2n 3.932
_pdbe_chem_comp_rdkit_properties.chi3n 3.932
_pdbe_chem_comp_rdkit_properties.chi4n 2.569
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.180
_pdbe_chem_comp_rdkit_properties.kappa1 11.130
_pdbe_chem_comp_rdkit_properties.kappa2 10.529
_pdbe_chem_comp_rdkit_properties.kappa3 5.936
_pdbe_chem_comp_rdkit_properties.Phi 3.084
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BGO UniChem ChEBI 85434
BGO UniChem ZINC ZINC000044137940
BGO UniChem PubChem 135450597
BGO UniChem ACTor 91828-87-4
BGO UniChem Nikkaji J1.250.472A
BGO UniChem 'EPA CompTox Dashboard' DTXSID70349352
BGO UniChem MetaboLights MTBLC85434
BGO UniChem BRENDA 170175
BGO UniChem BRENDA 59202
BGO UniChem BRENDA 66822
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BGO "C'" 0.968 -0.373 -1.866 ETKDGv3 1
BGO N1 -6.668 -1.989 0.585 ETKDGv3 2
BGO C2 -5.749 -3.107 0.582 ETKDGv3 3
BGO N2 -6.162 -4.368 0.060 ETKDGv3 4
BGO N3 -4.534 -2.965 1.047 ETKDGv3 5
BGO C4 -4.107 -1.702 1.581 ETKDGv3 6
BGO C5 -4.871 -0.643 1.605 ETKDGv3 7
BGO C6 -6.232 -0.717 1.087 ETKDGv3 8
BGO O6 -6.990 0.288 1.070 ETKDGv3 9
BGO N7 -4.133 0.507 2.001 ETKDGv3 10
BGO C8 -2.931 0.056 2.210 ETKDGv3 11
BGO N9 -2.797 -1.357 1.993 ETKDGv3 12
BGO PA 2.785 1.931 1.983 ETKDGv3 13
BGO PB 2.077 4.535 1.439 ETKDGv3 14
BGO "C1'" 2.104 -0.512 -2.794 ETKDGv3 15
BGO "O1'" -0.042 0.308 -2.195 ETKDGv3 16
BGO O1A 4.097 2.232 1.292 ETKDGv3 17
BGO C1B -1.568 -2.072 1.654 ETKDGv3 18
BGO O1B 3.326 4.775 0.321 ETKDGv3 19
BGO "C2'" 2.537 0.508 -3.575 ETKDGv3 20
BGO "N2'" 2.030 1.845 -3.440 ETKDGv3 21
BGO "O2'" -0.793 -2.956 -0.480 ETKDGv3 22
BGO O2A 2.969 2.163 3.652 ETKDGv3 23
BGO C2B -1.152 -1.777 0.204 ETKDGv3 24
BGO O2B 0.921 5.440 1.082 ETKDGv3 25
BGO "C3'" 3.604 0.260 -4.574 ETKDGv3 26
BGO "O3'" 1.019 -1.011 -0.624 ETKDGv3 27
BGO O3A 1.541 2.922 1.372 ETKDGv3 28
BGO C3B 0.017 -0.841 0.378 ETKDGv3 29
BGO O3B 2.617 4.925 2.996 ETKDGv3 30
BGO "C4'" 4.176 -0.945 -4.672 ETKDGv3 31
BGO "O4'" -0.536 -1.669 2.534 ETKDGv3 32
BGO C4B 0.549 -1.228 1.750 ETKDGv3 33
BGO "C5'" 3.744 -2.041 -3.785 ETKDGv3 34
BGO "O5'" 2.387 0.304 1.671 ETKDGv3 35
BGO C5B 1.253 -0.052 2.432 ETKDGv3 36
BGO "C6'" 2.765 -1.837 -2.896 ETKDGv3 37
BGO "CM'" 2.203 2.598 -2.200 ETKDGv3 38
BGO HN1 -7.637 -2.101 0.210 ETKDGv3 39
BGO HN2 -7.127 -4.494 -0.317 ETKDGv3 40
BGO HN2A -5.504 -5.179 0.050 ETKDGv3 41
BGO H8 -2.108 0.698 2.494 ETKDGv3 42
BGO H1B -1.744 -3.162 1.792 ETKDGv3 43
BGO HO1B 3.576 5.728 0.419 ETKDGv3 44
BGO "HN2'" 1.856 2.391 -4.314 ETKDGv3 45
BGO "HO2'" -0.076 -3.410 0.036 ETKDGv3 46
BGO HO2A 2.048 2.276 3.998 ETKDGv3 47
BGO H2B -1.963 -1.274 -0.368 ETKDGv3 48
BGO "H3'" 3.935 1.063 -5.220 ETKDGv3 49
BGO H3B -0.348 0.213 0.393 ETKDGv3 50
BGO HO3B 2.928 5.863 2.930 ETKDGv3 51
BGO "H4'" 4.961 -1.118 -5.397 ETKDGv3 52
BGO H4B 1.273 -2.069 1.653 ETKDGv3 53
BGO "H5'" 4.216 -3.012 -3.861 ETKDGv3 54
BGO H5B 0.514 0.776 2.541 ETKDGv3 55
BGO H5BA 1.581 -0.367 3.446 ETKDGv3 56
BGO "H6'" 2.447 -2.654 -2.260 ETKDGv3 57
BGO "HM'" 1.456 2.284 -1.445 ETKDGv3 58
BGO "HM'A" 3.225 2.437 -1.795 ETKDGv3 59
BGO "HM'B" 2.065 3.682 -2.396 ETKDGv3 60
#