Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8M6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.263 -0.553 0.002
2 N3 N N2 N N N 0 -6.35 -1.569 -0.417
3 C4 C C1 N N N 0 -2.173 1.39 0.681
4 C5 C C2 N Y N 0 -3.94 -1.604 -0.594
5 C6 C C3 N Y N 0 -3.903 -0.364 -0.092
6 C7 C C4 N N N 0 -5.219 -2.342 -0.953
7 C8 C C5 N N N 0 -6.328 -0.11 -0.597
8 C10 C C6 N N N 0 -7.371 -2.178 0.218
9 C13 C C7 N Y N 0 -0.135 3.826 0.213
10 C15 C C8 N Y N 0 -0.412 5.383 -1.339
11 C17 C C9 N N N 0 2.506 -0.567 0.132
12 C20 C C10 N Y N 0 6.957 -2.557 -0.038
13 C21 C C11 N Y N 0 8.877 -1.29 -0.163
14 C22 C C12 N Y N 0 8.15 -0.122 -0.297
15 C24 C C13 N N N 0 6.315 -3.913 0.106
16 C1 C C14 N N N 0 0.07 0.629 0.487
17 C2 C C15 N Y N 0 -1.575 -0.82 -0.168
18 C3 C C16 N Y N 0 -2.56 0.116 0.158
19 N2 N N3 N N N 0 -0.839 1.585 0.822
20 S1 S S1 N Y N 0 -2.325 -2.272 -0.783
21 C9 C C17 N N N 0 -5.149 0.464 0.191
22 C11 C C18 N N N 0 -7.367 -3.676 0.388
23 O1 O O1 N N N 0 -8.293 -1.521 0.651
24 C12 C C19 N N N 0 -0.361 2.865 1.352
25 O2 O O2 N Y N 0 1.012 3.979 -0.469
26 C14 C C20 N Y N 0 0.85 4.922 -1.412
27 C16 C C21 N Y N 0 -1.048 4.672 -0.296
28 S2 S S2 N N N 0 1.78 0.986 0.713
29 C18 C C22 N N N 0 4.007 -0.49 0.237
30 O3 O O3 N N N 0 4.535 0.516 0.662
31 N4 N N4 N N N 0 4.763 -1.539 -0.142
32 C19 C C23 N Y N 0 6.158 -1.427 -0.156
33 N5 N N5 N Y N 0 8.271 -2.455 -0.045
34 C23 C C24 N Y N 0 6.766 -0.181 -0.289
35 O4 O O4 N N N 0 -2.99 2.244 0.98
36 H1 H H1 N N N 0 -5.208 -3.337 -0.508
37 H2 H H2 N N N 0 -5.307 -2.422 -2.036
38 H3 H H3 N N N 0 -6.211 0.127 -1.654
39 H4 H H4 N N N 0 -7.26 0.318 -0.228
40 H5 H H5 N N N 0 -0.855 6.144 -1.963
41 H6 H H6 N N N 0 2.14 -1.39 0.746
42 H7 H H7 N N N 0 2.222 -0.735 -0.906
43 H8 H H8 N N N 0 9.956 -1.249 -0.169
44 H9 H H9 N N N 0 8.655 0.828 -0.393
45 H10 H H10 N N N 0 6.159 -4.348 -0.881
46 H11 H H11 N N N 0 6.966 -4.563 0.69
47 H12 H H12 N N N 0 5.356 -3.809 0.613
48 H13 H H13 N N N 0 -5.374 0.431 1.257
49 H14 H H14 N N N 0 -4.977 1.497 -0.113
50 H15 H H15 N N N 0 -6.488 -3.974 0.958
51 H16 H H16 N N N 0 -8.267 -3.983 0.92
52 H17 H H17 N N N 0 -7.344 -4.153 -0.592
53 H18 H H18 N N N 0 0.575 2.71 1.888
54 H19 H H19 N N N 0 -1.106 3.277 2.033
55 H20 H H20 N N N 0 1.605 5.256 -2.108
56 H21 H H21 N N N 0 -2.069 4.791 0.034
57 H22 H H22 N N N 0 4.341 -2.372 -0.405
58 H23 H H23 N N N 0 6.173 0.715 -0.391