data_8M6
#
_chem_comp.id 8M6
_chem_comp.name
2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H23 N5 O4 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-28
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 509.601
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8M6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q3F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8M6 N1 N1 N 0 1 N N N N N N 15.990 4.450 7.041 -0.263 -0.553 0.002 N1 8M6 1
8M6 N3 N2 N 0 1 N N N N N N 12.725 6.154 11.841 -6.350 -1.569 -0.417 N3 8M6 2
8M6 C4 C1 C 0 1 N N N N N N 14.866 2.508 8.762 -2.173 1.390 0.681 C4 8M6 3
8M6 C5 C2 C 0 1 Y N N N N N 14.131 5.892 10.005 -3.940 -1.604 -0.594 C5 8M6 4
8M6 C6 C3 C 0 1 Y N N N N N 13.971 4.548 10.069 -3.903 -0.364 -0.092 C6 8M6 5
8M6 C7 C4 C 0 1 N N N N N N 13.663 6.863 11.012 -5.219 -2.342 -0.953 C7 8M6 6
8M6 C8 C5 C 0 1 N N N N N N 13.252 4.905 12.370 -6.328 -0.110 -0.597 C8 8M6 7
8M6 C10 C6 C 0 1 N N N N N N 11.497 6.657 11.977 -7.371 -2.178 0.218 C10 8M6 8
8M6 C13 C7 C 0 1 Y N N N N N 14.533 0.543 6.506 -0.135 3.826 0.213 C13 8M6 9
8M6 C15 C8 C 0 1 Y N N N N N 12.840 0.431 5.066 -0.412 5.383 -1.339 C15 8M6 10
8M6 C17 C9 C 0 1 N N N N N N 18.727 3.587 5.690 2.506 -0.567 0.132 C17 8M6 11
8M6 C20 C10 C 0 1 Y N N N N N 18.649 8.005 4.402 6.957 -2.557 -0.038 C20 8M6 12
8M6 C21 C11 C 0 1 Y N N N N N 20.125 9.330 3.208 8.877 -1.290 -0.163 C21 8M6 13
8M6 C22 C12 C 0 1 Y N N N N N 21.179 8.462 3.400 8.150 -0.122 -0.297 C22 8M6 14
8M6 C24 C13 C 0 1 N N N N N N 17.249 7.817 4.915 6.315 -3.913 0.106 C24 8M6 15
8M6 C1 C14 C 0 1 N N N N N N 16.186 3.191 6.822 0.070 0.629 0.487 C1 8M6 16
8M6 C2 C15 C 0 1 Y N N N N N 15.266 4.765 8.139 -1.575 -0.820 -0.168 C2 8M6 17
8M6 C3 C16 C 0 1 Y N N N N N 14.657 3.883 8.990 -2.560 0.116 0.158 C3 8M6 18
8M6 N2 N3 N 0 1 N N N N N N 15.638 2.193 7.621 -0.839 1.585 0.822 N2 8M6 19
8M6 S1 S1 S 0 1 Y N N N N N 14.922 6.396 8.548 -2.325 -2.272 -0.783 S1 8M6 20
8M6 C9 C17 C 0 1 N N N N N N 13.271 3.930 11.233 -5.149 0.464 0.191 C9 8M6 21
8M6 C11 C18 C 0 1 N N N N N N 10.560 5.962 12.895 -7.367 -3.676 0.388 C11 8M6 22
8M6 O1 O1 O 0 1 N N N N N N 11.191 7.748 11.461 -8.293 -1.521 0.651 O1 8M6 23
8M6 C12 C19 C 0 1 N N N N N N 15.775 0.764 7.290 -0.361 2.865 1.352 C12 8M6 24
8M6 O2 O2 O 0 1 Y N N N N N 13.453 0.015 7.164 1.012 3.979 -0.469 O2 8M6 25
8M6 C14 C20 C 0 1 Y N N N N N 12.433 -0.049 6.280 0.850 4.922 -1.412 C14 8M6 26
8M6 C16 C21 C 0 1 Y N N N N N 14.182 0.833 5.241 -1.048 4.672 -0.296 C16 8M6 27
8M6 S2 S2 S 0 1 N N N N N N 17.160 2.753 5.421 1.780 0.986 0.713 S2 8M6 28
8M6 C18 C22 C 0 1 N N N N N N 18.581 4.899 4.970 4.007 -0.490 0.237 C18 8M6 29
8M6 O3 O3 O 0 1 N N N N N N 17.760 5.032 4.074 4.535 0.516 0.662 O3 8M6 30
8M6 N4 N4 N 0 1 N N N N N N 19.402 5.879 5.388 4.763 -1.539 -0.142 N4 8M6 31
8M6 C19 C23 C 0 1 Y N N N N N 19.695 7.057 4.658 6.158 -1.427 -0.156 C19 8M6 32
8M6 N5 N5 N 0 1 Y N N N N N 18.887 9.121 3.690 8.271 -2.455 -0.045 N5 8M6 33
8M6 C23 C24 C 0 1 Y N N N N N 20.966 7.308 4.125 6.766 -0.181 -0.289 C23 8M6 34
8M6 O4 O4 O 0 1 N N N N N N 14.368 1.610 9.433 -2.990 2.244 0.980 O4 8M6 35
8M6 H1 H1 H 0 1 N N N N N N 14.508 7.225 11.615 -5.208 -3.337 -0.508 H1 8M6 36
8M6 H2 H2 H 0 1 N N N N N N 13.171 7.716 10.521 -5.307 -2.422 -2.036 H2 8M6 37
8M6 H3 H3 H 0 1 N N N N N N 12.605 4.533 13.178 -6.211 0.127 -1.654 H3 8M6 38
8M6 H4 H4 H 0 1 N N N N N N 14.271 5.057 12.756 -7.260 0.318 -0.228 H4 8M6 39
8M6 H5 H5 H 0 1 N N N N N N 12.255 0.490 4.160 -0.855 6.144 -1.963 H5 8M6 40
8M6 H6 H6 H 0 1 N N N N N N 19.557 3.002 5.268 2.140 -1.390 0.746 H6 8M6 41
8M6 H7 H7 H 0 1 N N N N N N 18.902 3.750 6.764 2.222 -0.735 -0.906 H7 8M6 42
8M6 H8 H8 H 0 1 N N N N N N 20.304 10.230 2.638 9.956 -1.249 -0.169 H8 8M6 43
8M6 H9 H9 H 0 1 N N N N N N 22.154 8.682 2.990 8.655 0.828 -0.393 H9 8M6 44
8M6 H10 H10 H 0 1 N N N N N N 16.626 8.669 4.604 6.159 -4.348 -0.881 H10 8M6 45
8M6 H11 H11 H 0 1 N N N N N N 16.830 6.887 4.504 6.966 -4.563 0.690 H11 8M6 46
8M6 H12 H12 H 0 1 N N N N N N 17.266 7.757 6.013 5.356 -3.809 0.613 H12 8M6 47
8M6 H13 H13 H 0 1 N N N N N N 12.239 3.676 10.949 -5.374 0.431 1.257 H13 8M6 48
8M6 H14 H14 H 0 1 N N N N N N 13.803 3.017 11.540 -4.977 1.497 -0.113 H14 8M6 49
8M6 H15 H15 H 0 1 N N N N N N 9.642 6.559 13.004 -6.488 -3.974 0.958 H15 8M6 50
8M6 H16 H16 H 0 1 N N N N N N 10.308 4.974 12.483 -8.267 -3.983 0.920 H16 8M6 51
8M6 H17 H17 H 0 1 N N N N N N 11.035 5.838 13.879 -7.344 -4.153 -0.592 H17 8M6 52
8M6 H18 H18 H 0 1 N N N N N N 15.800 0.139 8.195 0.575 2.710 1.888 H18 8M6 53
8M6 H19 H19 H 0 1 N N N N N N 16.675 0.572 6.687 -1.106 3.277 2.033 H19 8M6 54
8M6 H20 H20 H 0 1 N N N N N N 11.444 -0.423 6.500 1.605 5.256 -2.108 H20 8M6 55
8M6 H21 H21 H 0 1 N N N N N N 14.813 1.291 4.494 -2.069 4.791 0.034 H21 8M6 56
8M6 H22 H22 H 0 1 N N N N N N 19.838 5.768 6.281 4.341 -2.372 -0.405 H22 8M6 57
8M6 H23 H23 H 0 1 N N N N N N 21.771 6.605 4.280 6.173 0.715 -0.391 H23 8M6 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8M6 C21 C22 DOUB Y N 1
8M6 C21 N5 SING Y N 2
8M6 C22 C23 SING Y N 3
8M6 N5 C20 DOUB Y N 4
8M6 O3 C18 DOUB N N 5
8M6 C23 C19 DOUB Y N 6
8M6 C20 C19 SING Y N 7
8M6 C20 C24 SING N N 8
8M6 C19 N4 SING N N 9
8M6 C18 N4 SING N N 10
8M6 C18 C17 SING N N 11
8M6 C15 C16 SING Y N 12
8M6 C15 C14 DOUB Y N 13
8M6 C16 C13 DOUB Y N 14
8M6 S2 C17 SING N N 15
8M6 S2 C1 SING N N 16
8M6 C14 O2 SING Y N 17
8M6 C13 O2 SING Y N 18
8M6 C13 C12 SING N N 19
8M6 C1 N1 DOUB N N 20
8M6 C1 N2 SING N N 21
8M6 N1 C2 SING N N 22
8M6 C12 N2 SING N N 23
8M6 N2 C4 SING N N 24
8M6 C2 S1 SING Y N 25
8M6 C2 C3 DOUB Y N 26
8M6 S1 C5 SING Y N 27
8M6 C4 C3 SING N N 28
8M6 C4 O4 DOUB N N 29
8M6 C3 C6 SING Y N 30
8M6 C5 C6 DOUB Y N 31
8M6 C5 C7 SING N N 32
8M6 C6 C9 SING N N 33
8M6 C7 N3 SING N N 34
8M6 C9 C8 SING N N 35
8M6 O1 C10 DOUB N N 36
8M6 N3 C10 SING N N 37
8M6 N3 C8 SING N N 38
8M6 C10 C11 SING N N 39
8M6 C7 H1 SING N N 40
8M6 C7 H2 SING N N 41
8M6 C8 H3 SING N N 42
8M6 C8 H4 SING N N 43
8M6 C15 H5 SING N N 44
8M6 C17 H6 SING N N 45
8M6 C17 H7 SING N N 46
8M6 C21 H8 SING N N 47
8M6 C22 H9 SING N N 48
8M6 C24 H10 SING N N 49
8M6 C24 H11 SING N N 50
8M6 C24 H12 SING N N 51
8M6 C9 H13 SING N N 52
8M6 C9 H14 SING N N 53
8M6 C11 H15 SING N N 54
8M6 C11 H16 SING N N 55
8M6 C11 H17 SING N N 56
8M6 C12 H18 SING N N 57
8M6 C12 H19 SING N N 58
8M6 C14 H20 SING N N 59
8M6 C16 H21 SING N N 60
8M6 N4 H22 SING N N 61
8M6 C23 H23 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8M6 InChI InChI 1.06 InChI=1S/C24H23N5O4S2/c1-14-18(6-3-8-25-14)26-20(31)13-34-24-27-22-21(23(32)29(24)11-16-5-4-10-33-16)17-7-9-28(15(2)30)12-19(17)35-22/h3-6,8,10H,7,9,11-13H2,1-2H3,(H,26,31)
8M6 InChIKey InChI 1.06 PQYXGDZAWKQEEM-UHFFFAOYSA-N
8M6 SMILES_CANONICAL CACTVS 3.385 CC(=O)N1CCc2c(C1)sc3N=C(SCC(=O)Nc4cccnc4C)N(Cc5occc5)C(=O)c23
8M6 SMILES CACTVS 3.385 CC(=O)N1CCc2c(C1)sc3N=C(SCC(=O)Nc4cccnc4C)N(Cc5occc5)C(=O)c23
8M6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c(cccn1)NC(=O)CSC2=Nc3c(c4c(s3)CN(CC4)C(=O)C)C(=O)N2Cc5ccco5
8M6 SMILES "OpenEye OEToolkits" 2.0.7 Cc1c(cccn1)NC(=O)CSC2=Nc3c(c4c(s3)CN(CC4)C(=O)C)C(=O)N2Cc5ccco5
#
_pdbx_chem_comp_identifier.comp_id 8M6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8M6 'Create component' 2021-10-28 PDBE
8M6 'Initial release' 2022-04-20 RCSB
8M6 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8M6 N1 N 12.002 0.029 1
8M6 N3 N 5.474 -1.124 2
8M6 C4 C 11.043 -2.924 3
8M6 C5 C 8.052 -0.320 4
8M6 C6 C 8.515 -1.746 5
8M6 C7 C 6.528 0.029 6
8M6 C8 C 5.957 -2.611 7
8M6 C10 C 4.008 -0.807 8
8M6 C13 C 15.041 -3.423 9
8M6 C15 C 17.454 -3.686 10
8M6 C17 C 14.980 0.622 11
8M6 C20 C 19.378 1.574 12
8M6 C21 C 21.302 3.320 13
8M6 C22 C 20.294 4.431 14
8M6 C24 C 18.920 0.146 15
8M6 C1 C 13.056 -1.124 16
8M6 C2 C 10.479 -0.320 17
8M6 C3 C 10.015 -1.746 18
8M6 N2 N 12.573 -2.611 19
8M6 S1 S 9.265 0.562 20
8M6 C9 C 7.487 -2.924 21
8M6 C11 C 3.000 -1.918 22
8M6 O1 O 3.550 0.622 23
8M6 C12 C 13.573 -3.729 24
8M6 O2 O 15.656 -2.055 25
8M6 C14 C 17.148 -2.217 26
8M6 C16 C 16.152 -4.431 27
8M6 S2 S 14.522 -0.807 28
8M6 C18 C 16.446 0.939 29
8M6 O3 O 17.454 -0.172 30
8M6 N4 N 16.904 2.367 31
8M6 C19 C 18.370 2.685 32
8M6 N5 N 20.844 1.891 33
8M6 C23 C 18.828 4.113 34
8M6 O4 O 10.562 -4.345 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8M6 C21 C22 DOUBLE NONE 1
8M6 C21 N5 SINGLE NONE 2
8M6 C22 C23 SINGLE NONE 3
8M6 N5 C20 DOUBLE NONE 4
8M6 O3 C18 DOUBLE NONE 5
8M6 C23 C19 DOUBLE NONE 6
8M6 C20 C19 SINGLE NONE 7
8M6 C20 C24 SINGLE NONE 8
8M6 C19 N4 SINGLE NONE 9
8M6 C18 N4 SINGLE NONE 10
8M6 C18 C17 SINGLE NONE 11
8M6 C15 C16 SINGLE NONE 12
8M6 C15 C14 DOUBLE NONE 13
8M6 C16 C13 DOUBLE NONE 14
8M6 S2 C17 SINGLE NONE 15
8M6 S2 C1 SINGLE NONE 16
8M6 C14 O2 SINGLE NONE 17
8M6 C13 O2 SINGLE NONE 18
8M6 C13 C12 SINGLE NONE 19
8M6 C1 N1 DOUBLE NONE 20
8M6 C1 N2 SINGLE NONE 21
8M6 N1 C2 SINGLE NONE 22
8M6 C12 N2 SINGLE NONE 23
8M6 N2 C4 SINGLE NONE 24
8M6 C2 S1 SINGLE NONE 25
8M6 C2 C3 DOUBLE NONE 26
8M6 S1 C5 SINGLE NONE 27
8M6 C4 C3 SINGLE NONE 28
8M6 C4 O4 DOUBLE NONE 29
8M6 C3 C6 SINGLE NONE 30
8M6 C5 C6 DOUBLE NONE 31
8M6 C5 C7 SINGLE NONE 32
8M6 C6 C9 SINGLE NONE 33
8M6 C7 N3 SINGLE NONE 34
8M6 C9 C8 SINGLE NONE 35
8M6 O1 C10 DOUBLE NONE 36
8M6 N3 C10 SINGLE NONE 37
8M6 N3 C8 SINGLE NONE 38
8M6 C10 C11 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8M6 MurckoScaffold S1 scaffold O=C(CSc1nc2sc3c(c2c(=O)n1Cc1ccco1)CCNC3)Nc1cccnc1 InChI=1S/C21H19N5O3S2/c27-17(24-13-3-1-6-22-9-13)12-30-21-25-19-18(15-5-7-23-10-16(15)31-19)20(28)26(21)11-14-4-2-8-29-14/h1-4,6,8-9,23H,5,7,10-12H2,(H,24,27) MUEVPEWAFXNGFJ-UHFFFAOYSA-N
8M6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8M6 furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
8M6 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
8M6 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
8M6 thiophen F5 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8M6 N1 S1 1
8M6 N3 S1 1
8M6 C4 S1 1
8M6 C5 S1 1
8M6 C6 S1 1
8M6 C7 S1 1
8M6 C8 S1 1
8M6 C13 S1 1
8M6 C15 S1 1
8M6 C17 S1 1
8M6 C20 S1 1
8M6 C21 S1 1
8M6 C22 S1 1
8M6 C1 S1 1
8M6 C2 S1 1
8M6 C3 S1 1
8M6 N2 S1 1
8M6 S1 S1 1
8M6 C9 S1 1
8M6 C12 S1 1
8M6 O2 S1 1
8M6 C14 S1 1
8M6 C16 S1 1
8M6 S2 S1 1
8M6 C18 S1 1
8M6 O3 S1 1
8M6 N4 S1 1
8M6 C19 S1 1
8M6 N5 S1 1
8M6 C23 S1 1
8M6 O4 S1 1
8M6 N3 F1 1
8M6 C10 F1 1
8M6 O1 F1 1
8M6 C11 F1 1
8M6 N4 F1 2
8M6 C18 F1 2
8M6 O3 F1 2
8M6 C17 F1 2
8M6 C13 F2 1
8M6 C16 F2 1
8M6 C15 F2 1
8M6 C14 F2 1
8M6 O2 F2 1
8M6 C20 F3 1
8M6 C19 F3 1
8M6 C23 F3 1
8M6 C22 F3 1
8M6 C21 F3 1
8M6 N5 F3 1
8M6 C3 F4 1
8M6 C2 F4 1
8M6 N1 F4 1
8M6 C1 F4 1
8M6 N2 F4 1
8M6 C4 F4 1
8M6 C5 F5 1
8M6 C6 F5 1
8M6 C3 F5 1
8M6 C2 F5 1
8M6 S1 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8M6
_pdbe_chem_comp_rdkit_properties.exactmw 509.119
_pdbe_chem_comp_rdkit_properties.amw 509.613
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.292
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 241.099
_pdbe_chem_comp_rdkit_properties.tpsa 110.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.202
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.397
_pdbe_chem_comp_rdkit_properties.chi0v 18.319
_pdbe_chem_comp_rdkit_properties.chi1v 10.653
_pdbe_chem_comp_rdkit_properties.chi2v 5.791
_pdbe_chem_comp_rdkit_properties.chi3v 5.791
_pdbe_chem_comp_rdkit_properties.chi4v 4.302
_pdbe_chem_comp_rdkit_properties.chi0n 39.686
_pdbe_chem_comp_rdkit_properties.chi1n 20.468
_pdbe_chem_comp_rdkit_properties.chi2n 4.070
_pdbe_chem_comp_rdkit_properties.chi3n 4.070
_pdbe_chem_comp_rdkit_properties.chi4n 2.654
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.440
_pdbe_chem_comp_rdkit_properties.kappa1 8.595
_pdbe_chem_comp_rdkit_properties.kappa2 9.666
_pdbe_chem_comp_rdkit_properties.kappa3 4.735
_pdbe_chem_comp_rdkit_properties.Phi 2.374
#
_pdbe_chem_comp_external_mappings.comp_id 8M6
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 163184874
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8M6 N1 0.485 0.671 1.429 ETKDGv3 1
8M6 N3 6.183 -2.109 1.862 ETKDGv3 2
8M6 C4 2.270 0.613 -0.734 ETKDGv3 3
8M6 C5 3.906 -1.176 2.154 ETKDGv3 4
8M6 C6 3.912 -0.687 0.911 ETKDGv3 5
8M6 C7 4.995 -2.029 2.734 ETKDGv3 6
8M6 C8 6.359 -1.149 0.756 ETKDGv3 7
8M6 C10 7.266 -2.973 2.275 ETKDGv3 8
8M6 C13 -0.202 1.074 -2.933 ETKDGv3 9
8M6 C15 -1.780 0.203 -4.249 ETKDGv3 10
8M6 C17 -2.337 0.310 -0.124 ETKDGv3 11
8M6 C20 -7.203 0.817 1.119 ETKDGv3 12
8M6 C21 -8.710 2.142 -0.196 ETKDGv3 13
8M6 C22 -7.731 2.570 -0.997 ETKDGv3 14
8M6 C24 -6.966 -0.114 2.269 ETKDGv3 15
8M6 C1 0.101 1.234 0.318 ETKDGv3 16
8M6 C2 1.779 0.075 1.557 ETKDGv3 17
8M6 C3 2.652 0.024 0.559 ETKDGv3 18
8M6 N2 0.995 1.287 -0.826 ETKDGv3 19
8M6 S1 2.387 -0.767 2.997 ETKDGv3 20
8M6 C9 5.054 -0.952 -0.024 ETKDGv3 21
8M6 C11 8.634 -2.879 1.666 ETKDGv3 22
8M6 O1 7.068 -3.845 3.165 ETKDGv3 23
8M6 C12 0.611 1.980 -2.063 ETKDGv3 24
8M6 O2 0.167 -0.221 -3.267 ETKDGv3 25
8M6 C14 -0.843 -0.718 -4.079 ETKDGv3 26
8M6 C16 -1.359 1.383 -3.501 ETKDGv3 27
8M6 S2 -1.560 1.917 0.242 ETKDGv3 28
8M6 C18 -3.769 0.526 -0.493 ETKDGv3 29
8M6 O3 -4.120 0.420 -1.699 ETKDGv3 30
8M6 N4 -4.731 0.846 0.524 ETKDGv3 31
8M6 C19 -6.080 1.265 0.247 ETKDGv3 32
8M6 N5 -8.412 1.246 0.887 ETKDGv3 33
8M6 C23 -6.348 2.118 -0.757 ETKDGv3 34
8M6 O4 3.024 0.516 -1.738 ETKDGv3 35
8M6 H1 4.579 -3.048 2.885 ETKDGv3 36
8M6 H2 5.289 -1.616 3.723 ETKDGv3 37
8M6 H3 6.695 -0.175 1.172 ETKDGv3 38
8M6 H4 7.124 -1.501 0.034 ETKDGv3 39
8M6 H5 -2.684 0.090 -4.832 ETKDGv3 40
8M6 H6 -1.806 -0.197 -0.957 ETKDGv3 41
8M6 H7 -2.279 -0.341 0.774 ETKDGv3 42
8M6 H8 -9.728 2.470 -0.357 ETKDGv3 43
8M6 H9 -7.947 3.250 -1.811 ETKDGv3 44
8M6 H10 -7.929 -0.480 2.684 ETKDGv3 45
8M6 H11 -6.375 -0.990 1.930 ETKDGv3 46
8M6 H12 -6.412 0.418 3.070 ETKDGv3 47
8M6 H13 5.192 -0.098 -0.717 ETKDGv3 48
8M6 H14 4.830 -1.865 -0.616 ETKDGv3 49
8M6 H15 8.973 -1.822 1.650 ETKDGv3 50
8M6 H16 9.364 -3.467 2.262 ETKDGv3 51
8M6 H17 8.614 -3.284 0.633 ETKDGv3 52
8M6 H18 1.511 2.305 -2.628 ETKDGv3 53
8M6 H19 0.047 2.907 -1.824 ETKDGv3 54
8M6 H20 -0.858 -1.711 -4.506 ETKDGv3 55
8M6 H21 -1.888 2.323 -3.413 ETKDGv3 56
8M6 H22 -4.451 0.705 1.520 ETKDGv3 57
8M6 H23 -5.557 2.510 -1.383 ETKDGv3 58
#