Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 6FN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 5.309 -0.773 0.091
2 N3 N N1 N Y N 0 6.278 -0.327 0.885
3 C2 C C2 N Y N 0 7.423 -0.975 0.975
4 F32 F F1 N N N 0 8.383 -0.49 1.793
5 N1 N N2 N Y N 0 7.667 -2.083 0.295
6 C6 C C3 N Y N 0 6.756 -2.601 -0.523
7 N6 N N3 N N N 0 7.02 -3.761 -1.231
8 C5 C C4 N Y N 0 5.522 -1.942 -0.657
9 N7 N N4 N Y N 0 4.394 -2.169 -1.373
10 C8 C C5 N Y N 0 3.529 -1.23 -1.127
11 N9 N N5 N Y N 0 4.042 -0.35 -0.22
12 C1' C C6 R N N 0 3.37 0.839 0.311
13 C2' C C7 N N N 0 3.753 2.095 -0.512
14 C3' C C8 S N N 0 2.544 3.029 -0.259
15 O3' O O1 N N N 0 2.843 3.965 0.779
16 C4' C C9 R N N 0 1.416 2.076 0.184
17 C33 C C10 N N N 0 1.0 2.397 1.558
18 C34 C C11 N N N 0 0.668 2.653 2.655
19 O4' O O2 N N N 0 1.941 0.739 0.128
20 C5' C C12 N N N 0 0.223 2.206 -0.765
21 O5' O O3 N N N 0 -0.859 1.408 -0.282
22 PA P P1 N N N 0 -2.278 1.306 -1.035
23 O3A O O4 N N N 0 -3.296 0.429 -0.147
24 PB P P2 N N N 0 -4.89 0.209 -0.163
25 O3B O O5 N N N 0 -5.263 -1.083 0.722
26 PG P P3 N N N 0 -6.541 -2.059 0.794
27 O3G O O6 N N N 0 -7.78 -1.26 0.663
28 O2G O O7 N N N 0 -6.465 -3.131 -0.406
29 O1G O O8 N N N 0 -6.547 -2.833 2.205
30 O2B O O9 N N N 0 -5.617 1.508 0.451
31 O1B O O10 N N N 0 -5.346 0.001 -1.556
32 O2A O O11 N N N 0 -2.834 2.665 -1.224
33 O1A O O12 N N N 0 -2.076 0.604 -2.47
34 H1 H H1 N N N 0 7.877 -4.205 -1.133
35 H2 H H2 N N N 0 6.347 -4.13 -1.824
36 H3 H H3 N N N 0 2.543 -1.165 -1.564
37 H4 H H4 N N N 0 3.616 0.979 1.363
38 H5 H H5 N N N 0 4.674 2.541 -0.135
39 H6 H H6 N N N 0 3.843 1.855 -1.571
40 H7 H H7 N N N 0 2.266 3.55 -1.175
41 H8 H H8 N N N 0 3.585 4.552 0.577
42 H9 H H9 N N N 0 0.371 2.882 3.636
43 H10 H H10 N N N 0 -0.089 3.25 -0.815
44 H11 H H11 N N N 0 0.511 1.866 -1.76
45 H12 H H12 N N N 0 -5.677 -3.691 -0.384
46 H13 H H13 N N N 0 -7.292 -3.44 2.318
47 H14 H H14 N N N 0 -5.366 1.705 1.363
48 H15 H H15 N N N 0 -1.714 -0.291 -2.422