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"biosample": "SAMEA2621487",
"latitude": -60.2287,
"sample-metadata": [
{
"key": "temperature",
"value": "1.84402",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-60.6476",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-01-03",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "33.71972",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-60.2287",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-60.3606",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-60.5096",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:South Shetland Islands (MRGID:21925)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101231Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.109555",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-01-03T16:00",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-01-03T11:05",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110103T1105Z_084_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "24.423039",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "338.2982",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "33.71972",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_084",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491001",
"analysis-completed": "2015-03-17",
"collection-date": "2011-01-03",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000780) was collected during the Tara Oceans expedition (2009-2013) at station TARA_084 (latitudeN=-60.2287, longitudeE=-60.6476) on date/time=2011-01-03T11:05, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000781.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000780",
"sample-alias": "TARA_B100000780",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:40:07"
},
"relationships": {
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"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
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"links": {
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}
},
"studies": {
"links": {
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},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
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},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
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},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
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},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
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"runs": {
"links": {
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},
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],
"meta": {
"pagination": {
"page": 1,
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"count": 136
}
}
}