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{
"data": {
"type": "samples",
"id": "ERS490633",
"attributes": {
"latitude": -20.9315,
"longitude": -35.1794,
"sample-metadata": [
{
"key": "temperature",
"value": "4.749588",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-35.1794",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "800",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-10-17",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "800.0",
"unit": null
},
{
"key": "salinity",
"value": "34.369274",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-20.9315",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-20.9724",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-35.2742",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Trindade and Martin Vaz Islands (MRGID:21989), Marine Ecoregion:Eastern Brazil (MRGID:21990)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-DNA(100L)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101003Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-10-17T13:37",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-10-17T09:05:05",
"unit": null
},
{
"key": "event label",
"value": "TARA_20101017T0905Z_076_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "34.589515",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "192.1655",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.369275",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_076",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"biosample": "SAMEA2621232",
"accession": "ERS490633",
"analysis-completed": "2015-03-17",
"collection-date": "2010-10-17",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000749) was collected during the Tara Oceans expedition (2009-2013) at station TARA_076 (latitudeN=-20.9315, longitudeE=-35.1794) on date/time=2010-10-17T09:05:05, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 800-800 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics analysis. This sample has replicate sample(s): TARA_B100000750.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000749",
"sample-alias": "TARA_B100000749",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:51:49"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490633/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
}
]
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490633/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490633?format=api"
}
}
}