MGnify API: archiving, analysis and integration of metagenomics data. EMBL-EBI

MGnify API provides programmatic access to the data for cross-database complex queries. For more details review the documentation.

GET /metagenomics/api/v1/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "data": {
        "biomes": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes?format=api",
        "studies": "https://www.ebi.ac.uk/metagenomics/api/v1/studies?format=api",
        "super-studies": "https://www.ebi.ac.uk/metagenomics/api/v1/super-studies?format=api",
        "samples": "https://www.ebi.ac.uk/metagenomics/api/v1/samples?format=api",
        "runs": "https://www.ebi.ac.uk/metagenomics/api/v1/runs?format=api",
        "assemblies": "https://www.ebi.ac.uk/metagenomics/api/v1/assemblies?format=api",
        "analyses": "https://www.ebi.ac.uk/metagenomics/api/v1/analyses?format=api",
        "experiment-types": "https://www.ebi.ac.uk/metagenomics/api/v1/experiment-types?format=api",
        "pipelines": "https://www.ebi.ac.uk/metagenomics/api/v1/pipelines?format=api",
        "pipeline-tools": "https://www.ebi.ac.uk/metagenomics/api/v1/pipeline-tools?format=api",
        "publications": "https://www.ebi.ac.uk/metagenomics/api/v1/publications?format=api",
        "genomes": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes?format=api",
        "genome-search": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-search?format=api",
        "genomes-search/gather": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes-search/gather?format=api",
        "genome-catalogues": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues?format=api",
        "genomeset": "https://www.ebi.ac.uk/metagenomics/api/v1/genomeset?format=api",
        "cogs": "https://www.ebi.ac.uk/metagenomics/api/v1/cogs?format=api",
        "kegg-modules": "https://www.ebi.ac.uk/metagenomics/api/v1/kegg-modules?format=api",
        "kegg-classes": "https://www.ebi.ac.uk/metagenomics/api/v1/kegg-classes?format=api",
        "antismash-geneclusters": "https://www.ebi.ac.uk/metagenomics/api/v1/antismash-geneclusters?format=api",
        "annotations/go-terms": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/go-terms?format=api",
        "annotations/interpro-identifiers": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/interpro-identifiers?format=api",
        "annotations/kegg-modules": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/kegg-modules?format=api",
        "annotations/pfam-entries": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/pfam-entries?format=api",
        "annotations/kegg-orthologs": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/kegg-orthologs?format=api",
        "annotations/genome-properties": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/genome-properties?format=api",
        "annotations/antismash-gene-clusters": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/antismash-gene-clusters?format=api",
        "annotations/organisms": "https://www.ebi.ac.uk/metagenomics/api/v1/annotations/organisms?format=api",
        "mydata": "https://www.ebi.ac.uk/metagenomics/api/v1/mydata?format=api"
    }
}

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