HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"links": {
"first": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482/samples?format=api&page=1",
"last": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482/samples?format=api&page=7",
"next": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482/samples?format=api&page=2",
"prev": null
},
"data": [
{
"type": "samples",
"id": "ERS491095",
"attributes": {
"biosample": "SAMEA2621536",
"longitude": -49.2139,
"latitude": -62.2231,
"sample-metadata": [
{
"key": "temperature",
"value": "-0.78154",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-49.2139",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "90",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-01-06",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "90.0",
"unit": null
},
{
"key": "salinity",
"value": "34.319477",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-62.2231",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-62.2658",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-49.1658",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Province:Scotia Sea (MRGID:21742), Marine Ecoregion:South Orkney Islands (MRGID:21928)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101231Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.540091",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-01-06T21:17",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-01-06T19:34:21",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110106T1936Z_085_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "33.109231",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "325.402987",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.319478",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_085",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491095",
"analysis-completed": "2015-03-17",
"collection-date": "2011-01-06",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000795) was collected during the Tara Oceans expedition (2009-2013) at station TARA_085 (latitudeN=-62.2231, longitudeE=-49.2139) on date/time=2011-01-06T19:34:21, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 80-98 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000794.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000795",
"sample-alias": "TARA_B100000795",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:50:51"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491095/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491095/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491095?format=api"
}
},
{
"type": "samples",
"id": "ERS492680",
"attributes": {
"biosample": "SAMEA2622673",
"longitude": -139.2393,
"latitude": -8.9729,
"sample-metadata": [
{
"key": "temperature",
"value": "7.212238",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-139.2393",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "600",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-07-27",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "600",
"unit": null
},
{
"key": "salinity",
"value": "34.580673",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-8.9729",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-8.978",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-139.2432",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Province:Marquesas (MRGID:21741), Marine Ecoregion:Marquesas (MRGID:21741)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110726Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-07-28T03:26",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-07-27T19:28:43",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110727T1932Z_122_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "42.53205",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "38.115125",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.580675",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_122",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492680",
"analysis-completed": "2015-03-17",
"collection-date": "2011-07-27",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000678) was collected during the Tara Oceans expedition (2009-2013) at station TARA_122 (latitudeN=-8.9729, longitudeE=-139.2393) on date/time=2011-07-27T19:28:43, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 600-600 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000677.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000678",
"sample-alias": "TARA_B100000678",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:50:36"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492680/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492680/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492680?format=api"
}
},
{
"type": "samples",
"id": "ERS492888",
"attributes": {
"biosample": "SAMEA2622817",
"longitude": -142.5571,
"latitude": -8.9111,
"sample-metadata": [
{
"key": "temperature",
"value": "26.780157",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-142.5571",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-08-08",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "35.427734",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-8.9111",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-8.895",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-142.6228",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Province:Marquesas (MRGID:21741), Marine Ecoregion:Marquesas (MRGID:21741)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110726Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.233673",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-08-08T19:54",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-08-08T17:33",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110808T1733Z_125_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "4.985942",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "187.302833",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.427733",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_125",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492888",
"analysis-completed": "2015-03-17",
"collection-date": "2011-08-08",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001121) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.9111, longitudeE=-142.5571) on date/time=2011-08-08T17:33, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001122.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001121",
"sample-alias": "TARA_B100001121",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:50:07"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492888/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492888/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492888?format=api"
}
},
{
"type": "samples",
"id": "ERS493705",
"attributes": {
"biosample": "SAMEA2623314",
"longitude": -116.6433,
"latitude": 14.2025,
"sample-metadata": [
{
"key": "temperature",
"value": "8.911481",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-116.6433",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "375",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-12-03",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "375",
"unit": null
},
{
"key": "salinity",
"value": "34.5867",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "14.2025",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "14.1468",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-116.6821",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:Revillagigedos (MRGID:21973)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20111124Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.001625",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-12-03T18:48",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-12-03T14:31:20",
"unit": null
},
{
"key": "event label",
"value": "TARA_20111203T1433Z_137_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "35.716708",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "0.628413",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.586699",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_137",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS493705",
"analysis-completed": "2015-03-17",
"collection-date": "2011-12-03",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001971) was collected during the Tara Oceans expedition (2009-2013) at station TARA_137 (latitudeN=14.2025, longitudeE=-116.6433) on date/time=2011-12-03T14:31:20, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 370-379 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001972.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001971",
"sample-alias": "TARA_B100001971",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:49:27"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493705/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493705/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493705?format=api"
}
},
{
"type": "samples",
"id": "ERS494374",
"attributes": {
"biosample": "SAMEA2623756",
"longitude": -56.9684,
"latitude": 34.1504,
"sample-metadata": [
{
"key": "temperature",
"value": "18.169021",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-56.9684",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "250",
"unit": "m"
},
{
"key": "collection date",
"value": "2012-02-27",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "250",
"unit": null
},
{
"key": "salinity",
"value": "36.563667",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "34.1504",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "33.9044",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-56.7834",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degree) Marine Ecoregion:Bermuda (MRGID:21979)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20120223Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.004651",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2012-02-27T21:34",
"unit": null
},
{
"key": "event date/time start",
"value": "2012-02-27T15:28:31",
"unit": null
},
{
"key": "event label",
"value": "TARA_20120227T1532Z_148b_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "4.042901",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "191.752575",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "36.563668",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_148b",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS494374",
"analysis-completed": "2015-03-17",
"collection-date": "2012-02-27",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001750) was collected during the Tara Oceans expedition (2009-2013) at station TARA_148b (latitudeN=34.1504, longitudeE=-56.9684) on date/time=2012-02-27T15:28:31, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 240-258 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001751.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001750",
"sample-alias": "TARA_B100001750",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:46:40"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494374/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494374/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494374?format=api"
}
},
{
"type": "samples",
"id": "ERS494431",
"attributes": {
"biosample": "SAMEA2623794",
"longitude": -49.8233,
"latitude": 34.0771,
"sample-metadata": [
{
"key": "temperature",
"value": "10.565417",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-49.8233",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "740",
"unit": "m"
},
{
"key": "collection date",
"value": "2012-03-01",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "740.0",
"unit": null
},
{
"key": "salinity",
"value": "35.375244",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "34.0771",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "34.155",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-49.6942",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20120223Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.009303",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2012-03-01T22:40",
"unit": null
},
{
"key": "event date/time start",
"value": "2012-03-01T18:50:26",
"unit": null
},
{
"key": "event label",
"value": "TARA_20120301T1853Z_149_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "21.26922",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "155.156833",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.375245",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_149",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS494431",
"analysis-completed": "2015-03-17",
"collection-date": "2012-03-01",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001765) was collected during the Tara Oceans expedition (2009-2013) at station TARA_149 (latitudeN=34.0771, longitudeE=-49.8233) on date/time=2012-03-01T18:50:26, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 732-750 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001765",
"sample-alias": "TARA_B100001765",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:46:14"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494431/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494431/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS494431?format=api"
}
},
{
"type": "samples",
"id": "ERS491001",
"attributes": {
"biosample": "SAMEA2621487",
"longitude": -60.6476,
"latitude": -60.2287,
"sample-metadata": [
{
"key": "temperature",
"value": "1.84402",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-60.6476",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-01-03",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "33.71972",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-60.2287",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-60.3606",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-60.5096",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:South Shetland Islands (MRGID:21925)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101231Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.109555",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-01-03T16:00",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-01-03T11:05",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110103T1105Z_084_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "24.423039",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "338.2982",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "33.71972",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_084",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491001",
"analysis-completed": "2015-03-17",
"collection-date": "2011-01-03",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000780) was collected during the Tara Oceans expedition (2009-2013) at station TARA_084 (latitudeN=-60.2287, longitudeE=-60.6476) on date/time=2011-01-03T11:05, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000781.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000780",
"sample-alias": "TARA_B100000780",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:40:07"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491001/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491001/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491001?format=api"
}
},
{
"type": "samples",
"id": "ERS492357",
"attributes": {
"biosample": "SAMEA2622478",
"longitude": -100.6751,
"latitude": -16.9587,
"sample-metadata": [
{
"key": "temperature",
"value": "19.881449",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-100.6751",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "90",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-05-31",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "90.0",
"unit": null
},
{
"key": "salinity",
"value": "35.68725",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-16.9587",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-16.9687",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-100.7324",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110520Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.378549",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-05-31T23:10",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-05-31T20:28:10",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110531T2030Z_111_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "1.411516",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "211.54555",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.687249",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_111",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492357",
"analysis-completed": "2015-03-17",
"collection-date": "2011-05-31",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000579) was collected during the Tara Oceans expedition (2009-2013) at station TARA_111 (latitudeN=-16.9587, longitudeE=-100.6751) on date/time=2011-05-31T20:28:10, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 86-95 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000580.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000579",
"sample-alias": "TARA_B100000579",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:39:38"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492357/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492357/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492357?format=api"
}
},
{
"type": "samples",
"id": "ERS492926",
"attributes": {
"biosample": "SAMEA2622837",
"longitude": -142.5461,
"latitude": -8.8999,
"sample-metadata": [
{
"key": "temperature",
"value": "23.706526",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-142.5461",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "140",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-08-09",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "marine epipelagic mixed layer (ENVO:xxxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "140.0",
"unit": null
},
{
"key": "salinity",
"value": "36.272675",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-8.8999",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-8.9103",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-142.5767",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Province:Marquesas (MRGID:21741), Marine Ecoregion:Marquesas (MRGID:21741)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110726Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.020173",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-08-09T21:37",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-08-09T17:05:33",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110809T1708Z_125_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "3.67243",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "160.4895",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "36.272675",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_125",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492926",
"analysis-completed": "2015-03-17",
"collection-date": "2011-08-09",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001123) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.8999, longitudeE=-142.5461) on date/time=2011-08-09T17:05:33, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 140-140 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001124.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "marine epipelagic mixed layer (ENVO:xxxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001123",
"sample-alias": "TARA_B100001123",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:39:09"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492926/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492926/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492926?format=api"
}
},
{
"type": "samples",
"id": "ERS489585",
"attributes": {
"biosample": "SAMEA2620570",
"longitude": 53.9601,
"latitude": -16.9534,
"sample-metadata": [
{
"key": "temperature",
"value": "24.89426",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "53.9601",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "75",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-05-17",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "75",
"unit": null
},
{
"key": "salinity",
"value": "34.910755",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-16.9534",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-16.9675",
"unit": "DD"
},
{
"key": "longitude end",
"value": "53.9199",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:Cargados Carajos/Tromelin Island (MRGID:22029)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-1.6",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20100515Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.394226",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-05-17T13:50",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-05-17T11:42",
"unit": null
},
{
"key": "event label",
"value": "TARA_20100517T1142Z_052_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "0.244232",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "192.55925",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.910755",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump) with ECOTriplet",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_052",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "1.6",
"unit": null
}
],
"accession": "ERS489585",
"analysis-completed": "2015-03-17",
"collection-date": "2010-05-17",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000214) was collected during the Tara Oceans expedition (2009-2013) at station TARA_052 (latitudeN=-16.9534, longitudeE=53.9601) on date/time=2010-05-17T11:42, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 73-77 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-1.6 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000215.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000214",
"sample-alias": "TARA_B100000214",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T18:36:43"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489585/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489585/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489585?format=api"
}
},
{
"type": "samples",
"id": "ERS490542",
"attributes": {
"biosample": "SAMEA2621198",
"longitude": -35.1803,
"latitude": -20.9354,
"sample-metadata": [
{
"key": "temperature",
"value": "23.349542",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-35.1803",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-10-16",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5",
"unit": null
},
{
"key": "salinity",
"value": "37.101368",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-20.9354",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-21.0073",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-35.3344",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Trindade and Martin Vaz Islands (MRGID:21989), Marine Ecoregion:Eastern Brazil (MRGID:21990)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101003Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.033622",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-10-16T12:37",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-10-16T09:55",
"unit": null
},
{
"key": "event label",
"value": "TARA_20101016T0955Z_076_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "0.030608",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "206.194333",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "37.101367",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_076",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS490542",
"analysis-completed": "2015-03-17",
"collection-date": "2010-10-16",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000513) was collected during the Tara Oceans expedition (2009-2013) at station TARA_076 (latitudeN=-20.9354, longitudeE=-35.1803) on date/time=2010-10-16T09:55, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000514.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000513",
"sample-alias": "TARA_B100000513",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:59:16"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490542/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490542/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490542?format=api"
}
},
{
"type": "samples",
"id": "ERS490885",
"attributes": {
"biosample": "SAMEA2621401",
"longitude": -58.2902,
"latitude": -47.1863,
"sample-metadata": [
{
"key": "temperature",
"value": "7.321517",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-58.2902",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-12-06",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "34.04864",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-47.1863",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-47.1906",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-58.2682",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:Malvinas/Falklands (MRGID:21890)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101126Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.310844",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-12-06T11:45",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-12-06T10:33",
"unit": null
},
{
"key": "event label",
"value": "TARA_20101206T1033Z_082_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "17.091069",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "305.012167",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.048642",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_082",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS490885",
"analysis-completed": "2015-03-17",
"collection-date": "2010-12-06",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000768) was collected during the Tara Oceans expedition (2009-2013) at station TARA_082 (latitudeN=-47.1863, longitudeE=-58.2902) on date/time=2010-12-06T10:33, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000769.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000768",
"sample-alias": "TARA_B100000768",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:59:01"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490885/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490885/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490885?format=api"
}
},
{
"type": "samples",
"id": "ERS491874",
"attributes": {
"biosample": "SAMEA2622119",
"longitude": -96.0122,
"latitude": -12.9723,
"sample-metadata": [
{
"key": "temperature",
"value": "20.649431",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-96.0122",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "50",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-04-15",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "50",
"unit": null
},
{
"key": "salinity",
"value": "35.544655",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-12.9723",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-12.9226",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-96.0932",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110401Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.366887",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-04-15T23:26",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-04-15T19:38",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110415T1938Z_100_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "1.501977",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "216.790338",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.544655",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump) with ECOTriplet",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_100",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491874",
"analysis-completed": "2015-03-17",
"collection-date": "2011-04-15",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000965) was collected during the Tara Oceans expedition (2009-2013) at station TARA_100 (latitudeN=-12.9723, longitudeE=-96.0122) on date/time=2011-04-15T19:38, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 48-52 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000966.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000965",
"sample-alias": "TARA_B100000965",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:58:23"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491874/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491874/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491874?format=api"
}
},
{
"type": "samples",
"id": "ERS491913",
"attributes": {
"biosample": "SAMEA2622149",
"longitude": -96.0232,
"latitude": -12.9794,
"sample-metadata": [
{
"key": "temperature",
"value": "13.014573",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-96.0232",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "177",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-04-16",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "177.0",
"unit": null
},
{
"key": "salinity",
"value": "34.840218",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-12.9794",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-12.9057",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-96.155",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110401Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.121464",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-04-16T19:52",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-04-16T13:03:08",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110416T1306Z_100_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "21.068385",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "0.70843",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.840218",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_100",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491913",
"analysis-completed": "2015-03-17",
"collection-date": "2011-04-16",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000959) was collected during the Tara Oceans expedition (2009-2013) at station TARA_100 (latitudeN=-12.9794, longitudeE=-96.0232) on date/time=2011-04-16T13:03:08, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 174-180 m, targeting a mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000960.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000959",
"sample-alias": "TARA_B100000959",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:58:10"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491913/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491913/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491913?format=api"
}
},
{
"type": "samples",
"id": "ERS492145",
"attributes": {
"biosample": "SAMEA2622316",
"longitude": -84.5766,
"latitude": 1.9928,
"sample-metadata": [
{
"key": "temperature",
"value": "27.617558",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-84.5766",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-05-12",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "33.3676",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "1.9928",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "2.0596",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-84.553",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Eastern Galapagos Islands (MRGID:21870), Marine Ecoregion:Cocos Islands (MRGID:21970)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110509Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.28167",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-05-12T17:50",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-05-12T14:00",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110512T1400Z_109_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "1.210114",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "198.635833",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "33.3676",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_109",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492145",
"analysis-completed": "2015-03-17",
"collection-date": "2011-05-12",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000925) was collected during the Tara Oceans expedition (2009-2013) at station TARA_109 (latitudeN=1.9928, longitudeE=-84.5766) on date/time=2011-05-12T14:00, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000926.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000925",
"sample-alias": "TARA_B100000925",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:57:55"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492145/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492145/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492145?format=api"
}
},
{
"type": "samples",
"id": "ERS490928",
"attributes": {
"biosample": "SAMEA2621423",
"longitude": -57.9446,
"latitude": -47.2007,
"sample-metadata": [
{
"key": "temperature",
"value": "6.975635",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-57.9446",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "40",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-12-06",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "40.0",
"unit": null
},
{
"key": "salinity",
"value": "34.057594",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-47.2007",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-47.1208",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-57.8265",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Ecoregion:Malvinas/Falklands (MRGID:21890)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20101126Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "1.01772",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-12-06T22:11",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-12-06T18:58",
"unit": null
},
{
"key": "event label",
"value": "TARA_20101206T1858Z_082_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "17.111823",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "306.211529",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.057594",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump) with ECOTriplet",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_082",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS490928",
"analysis-completed": "2015-03-17",
"collection-date": "2010-12-06",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000767) was collected during the Tara Oceans expedition (2009-2013) at station TARA_082 (latitudeN=-47.2007, longitudeE=-57.9446) on date/time=2010-12-06T18:58, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 38-42 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000770.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000767",
"sample-alias": "TARA_B100000767",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:50:15"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490928/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490928/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS490928?format=api"
}
},
{
"type": "samples",
"id": "ERS491938",
"attributes": {
"biosample": "SAMEA2622173",
"longitude": -85.1545,
"latitude": -5.2529,
"sample-metadata": [
{
"key": "temperature",
"value": "24.943108",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-85.1545",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-04-21",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "34.748177",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-5.2529",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-5.254",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-85.2248",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Eastern Galapagos Islands (MRGID:21870), Marine Ecoregion:Guayaquil (MRGID:21974)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110401Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.238224",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-04-21T23:14",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-04-21T20:07",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110421T2007Z_102_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "11.688971",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "205.992583",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.748175",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_102",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491938",
"analysis-completed": "2015-03-17",
"collection-date": "2011-04-21",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000900) was collected during the Tara Oceans expedition (2009-2013) at station TARA_102 (latitudeN=-5.2529, longitudeE=-85.1545) on date/time=2011-04-21T20:07, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000901.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000900",
"sample-alias": "TARA_B100000900",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:49:46"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491938/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491938/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491938?format=api"
}
},
{
"type": "samples",
"id": "ERS493822",
"attributes": {
"biosample": "SAMEA2623390",
"longitude": -103.0598,
"latitude": 6.3559,
"sample-metadata": [
{
"key": "temperature",
"value": "8.210557",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-103.0598",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "450",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-12-11",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "450.0",
"unit": null
},
{
"key": "salinity",
"value": "34.608433",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "6.3559",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "6.3929",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-103.0691",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20111124Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.002017",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-12-12T01:53",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-12-11T20:37:22",
"unit": null
},
{
"key": "event label",
"value": "TARA_20111211T2040Z_138_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "36.886053",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "0.78015",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.608434",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_138",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS493822",
"analysis-completed": "2015-03-17",
"collection-date": "2011-12-11",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100002003) was collected during the Tara Oceans expedition (2009-2013) at station TARA_138 (latitudeN=6.3559, longitudeE=-103.0598) on date/time=2011-12-11T20:37:22, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 440-458 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100002004.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100002003",
"sample-alias": "TARA_B100002003",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:49:31"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493822/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493822/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493822?format=api"
}
},
{
"type": "samples",
"id": "ERS493752",
"attributes": {
"biosample": "SAMEA2623350",
"longitude": -102.9432,
"latitude": 6.3332,
"sample-metadata": [
{
"key": "temperature",
"value": "26.6362",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-102.9432",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-12-10",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "33.407043",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "6.3332",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "6.3315",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-102.9484",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20111124Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.013449",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-12-10T14:50",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-12-10T14:08",
"unit": null
},
{
"key": "event label",
"value": "TARA_20111210T1408Z_138_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "-1.184318",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "196.88275",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "33.407042",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_138",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS493752",
"analysis-completed": "2015-03-17",
"collection-date": "2011-12-10",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100001989) was collected during the Tara Oceans expedition (2009-2013) at station TARA_138 (latitudeN=6.3332, longitudeE=-102.9432) on date/time=2011-12-10T14:08, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001990.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100001989",
"sample-alias": "TARA_B100001989",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:49:00"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493752/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493752/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS493752?format=api"
}
},
{
"type": "samples",
"id": "ERS492205",
"attributes": {
"biosample": "SAMEA2622362",
"longitude": -84.5546,
"latitude": 2.0649,
"sample-metadata": [
{
"key": "temperature",
"value": "11.3158",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-84.5546",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "380",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-05-13",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "380",
"unit": null
},
{
"key": "salinity",
"value": "34.79985",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "2.0649",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "2.1008",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-84.5107",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Eastern Galapagos Islands (MRGID:21870), Marine Ecoregion:Cocos Islands (MRGID:21970)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110509Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-05-13T23:08",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-05-13T16:08:58",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110513T1617Z_109_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "33.915981",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "2.516667",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.79985",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_109",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492205",
"analysis-completed": "2015-03-17",
"collection-date": "2011-05-13",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000929) was collected during the Tara Oceans expedition (2009-2013) at station TARA_109 (latitudeN=2.0649, longitudeE=-84.5546) on date/time=2011-05-13T16:08:58, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 380-380 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000930.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000929",
"sample-alias": "TARA_B100000929",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:46:29"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492205/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492205/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492205?format=api"
}
},
{
"type": "samples",
"id": "ERS492321",
"attributes": {
"biosample": "SAMEA2622452",
"longitude": -100.6335,
"latitude": -16.9601,
"sample-metadata": [
{
"key": "temperature",
"value": "22.76873",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-100.6335",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-05-31",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "35.97144",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-16.9601",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-16.9554",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-100.6925",
"unit": "DD"
},
{
"key": "marine region",
"value": "n/a",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110520Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.203347",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-05-31T16:50",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-05-31T14:25",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110531T1425Z_111_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "2.568726",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "208.8654",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.97144",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_111",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492321",
"analysis-completed": "2015-03-17",
"collection-date": "2011-05-31",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000575) was collected during the Tara Oceans expedition (2009-2013) at station TARA_111 (latitudeN=-16.9601, longitudeE=-100.6335) on date/time=2011-05-31T14:25, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000576.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000575",
"sample-alias": "TARA_B100000575",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:45:58"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492321/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492321/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492321?format=api"
}
},
{
"type": "samples",
"id": "ERS492814",
"attributes": {
"biosample": "SAMEA2622759",
"longitude": -140.5216,
"latitude": -9.1504,
"sample-metadata": [
{
"key": "temperature",
"value": "26.518986",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-140.5216",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-08-04",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5.0",
"unit": null
},
{
"key": "salinity",
"value": "35.39673",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-9.1504",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-9.1552",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-140.5284",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Province:Marquesas (MRGID:21741), Marine Ecoregion:Marquesas (MRGID:21741)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110726Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.286662",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-08-04T22:00",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-08-04T18:33",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110804T1833Z_124_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "5.111856",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "190.724",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "35.396729",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_124",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS492814",
"analysis-completed": "2015-03-17",
"collection-date": "2011-08-04",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000674) was collected during the Tara Oceans expedition (2009-2013) at station TARA_124 (latitudeN=-9.1504, longitudeE=-140.5216) on date/time=2011-08-04T18:33, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000675.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000674",
"sample-alias": "TARA_B100000674",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:45:42"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492814/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492814/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS492814?format=api"
}
},
{
"type": "samples",
"id": "ERS489043",
"attributes": {
"biosample": "SAMEA2620194",
"longitude": 69.9776,
"latitude": 14.6059,
"sample-metadata": [
{
"key": "temperature",
"value": "29.089367",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "69.9776",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "5",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-03-30",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "surface water layer (ENVO:00002042)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "5",
"unit": null
},
{
"key": "salinity",
"value": "36.024883",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "14.6059",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "14.5",
"unit": "DD"
},
{
"key": "longitude end",
"value": "70",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Province:West and South Indian Shelf (MRGID:21777)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-1.6",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20100327Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.020173",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-03-30T05:40",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-03-30T02:47",
"unit": null
},
{
"key": "event label",
"value": "TARA_20100330T0247Z_041_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "-1.343153",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "187.42925",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "36.024883",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump)",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_041",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "1.6",
"unit": null
}
],
"accession": "ERS489043",
"analysis-completed": "2015-03-17",
"collection-date": "2010-03-30",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000282) was collected during the Tara Oceans expedition (2009-2013) at station TARA_041 (latitudeN=14.6059, longitudeE=69.9776) on date/time=2010-03-30T02:47, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-1.6 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000283.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "surface water layer (ENVO:00002042)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000282",
"sample-alias": "TARA_B100000282",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:44:44"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489043/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006605",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006605?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489043/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489043?format=api"
}
},
{
"type": "samples",
"id": "ERS489074",
"attributes": {
"biosample": "SAMEA2620217",
"longitude": 70.0128,
"latitude": 14.5536,
"sample-metadata": [
{
"key": "temperature",
"value": "27.117662",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "70.0128",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "60",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-03-30",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "60.0",
"unit": null
},
{
"key": "salinity",
"value": "36.496162",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "14.5536",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "14.5375",
"unit": "DD"
},
{
"key": "longitude end",
"value": "70.0244",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Province:West and South Indian Shelf (MRGID:21777)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-1.6",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20100327Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.47554",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-03-30T12:20",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-03-30T10:56",
"unit": null
},
{
"key": "event label",
"value": "TARA_20100330T1056Z_041_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "-0.224514",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "148.328125",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "36.496162",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump) with ECOTriplet",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_041",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "1.6",
"unit": null
}
],
"accession": "ERS489074",
"analysis-completed": "2015-03-17",
"collection-date": "2010-03-30",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000287) was collected during the Tara Oceans expedition (2009-2013) at station TARA_041 (latitudeN=14.5536, longitudeE=70.0128) on date/time=2010-03-30T10:56, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 58-62 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-1.6 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000287",
"sample-alias": "TARA_B100000287",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:44:30"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074?format=api"
}
},
{
"type": "samples",
"id": "ERS491980",
"attributes": {
"biosample": "SAMEA2622197",
"longitude": -85.1678,
"latitude": -5.261,
"sample-metadata": [
{
"key": "temperature",
"value": "9.195825",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "-85.1678",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "480",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-04-22",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "480.0",
"unit": null
},
{
"key": "salinity",
"value": "34.69255",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "-5.261",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "-5.2771",
"unit": "DD"
},
{
"key": "longitude end",
"value": "-85.2995",
"unit": "DD"
},
{
"key": "marine region",
"value": "\"(search radius=5 degrees) Marine Ecoregion:Eastern Galapagos Islands (MRGID:21870), Marine Ecoregion:Guayaquil (MRGID:21974)\"",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-3",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20110401Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.010087",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2011-04-22T17:13",
"unit": null
},
{
"key": "event date/time start",
"value": "2011-04-22T12:08:28",
"unit": null
},
{
"key": "event label",
"value": "TARA_20110422T1210Z_102_Combined-EVENTS_CAST",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "40.008967",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "4.42525",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "34.69255",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_102",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "3",
"unit": null
}
],
"accession": "ERS491980",
"analysis-completed": "2015-03-17",
"collection-date": "2011-04-22",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000953) was collected during the Tara Oceans expedition (2009-2013) at station TARA_102 (latitudeN=-5.261, longitudeE=-85.1678) on date/time=2011-04-22T12:08:28, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 480-480 m, targeting a mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100000954.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "mesopelagic zone (ENVO:00000213) & marine oxygen minimum zone (ENVO:01000065)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000953",
"sample-alias": "TARA_B100000953",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T16:25:13"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491980/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491980/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS491980?format=api"
}
}
],
"meta": {
"pagination": {
"page": 1,
"pages": 7,
"count": 159
}
}
}