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{
"data": {
"type": "samples",
"id": "ERS489074",
"attributes": {
"biosample": "SAMEA2620217",
"longitude": 70.0128,
"latitude": 14.5536,
"sample-metadata": [
{
"key": "temperature",
"value": "27.117662",
"unit": null
},
{
"key": "project name",
"value": "Tara Oceans expedition (2009-2013)",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "70.0128",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "60",
"unit": "m"
},
{
"key": "collection date",
"value": "2010-03-30",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome (ENVO:00000447)",
"unit": null
},
{
"key": "environment (feature)",
"value": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"unit": null
},
{
"key": "environment (material)",
"value": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"unit": null
},
{
"key": "environmental package",
"value": "water",
"unit": null
},
{
"key": "depth",
"value": "60.0",
"unit": null
},
{
"key": "salinity",
"value": "36.496162",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "14.5536",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 2000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000030",
"unit": null
},
{
"key": "latitude end",
"value": "14.5375",
"unit": "DD"
},
{
"key": "longitude end",
"value": "70.0244",
"unit": "DD"
},
{
"key": "marine region",
"value": "(search radius=5 degrees) Marine Province:West and South Indian Shelf (MRGID:21777)",
"unit": null
},
{
"key": "protocol label",
"value": "BACT_NUC-RNA(10L-or-10min)_W0.22-1.6",
"unit": null
},
{
"key": "sampling campaign",
"value": "TARA_20100327Z",
"unit": null
},
{
"key": "sampling platform",
"value": "SV Tara",
"unit": null
},
{
"key": "chlorophyll sensor",
"value": "0.47554",
"unit": "mg Chl/m3"
},
{
"key": "citation",
"value": "tbd",
"unit": null
},
{
"key": "event date/time end",
"value": "2010-03-30T12:20",
"unit": null
},
{
"key": "event date/time start",
"value": "2010-03-30T10:56",
"unit": null
},
{
"key": "event label",
"value": "TARA_20100330T1056Z_041_EVENT_PUMP",
"unit": null
},
{
"key": "further details",
"value": "tbd",
"unit": null
},
{
"key": "last update date",
"value": "2014-05-01Z",
"unit": null
},
{
"key": "nitrate sensor",
"value": "-0.224514",
"unit": "µmol/L"
},
{
"key": "oxygen sensor",
"value": "148.328125",
"unit": "µmol/Kg"
},
{
"key": "salinity sensor",
"value": "36.496162",
"unit": "psu"
},
{
"key": "sample collection device",
"value": "PUMP (High Volume Peristaltic Pump) with ECOTriplet",
"unit": null
},
{
"key": "sample status",
"value": "This version can be used to provide data discovery services",
"unit": null
},
{
"key": "sampling station",
"value": "TARA_041",
"unit": null
},
{
"key": "size fraction lower threshold",
"value": "0.22",
"unit": null
},
{
"key": "size fraction upper threshold",
"value": "1.6",
"unit": null
}
],
"accession": "ERS489074",
"analysis-completed": "2015-03-17",
"collection-date": "2010-03-30",
"geo-loc-name": null,
"sample-desc": "\"This sample (TARA_B100000287) was collected during the Tara Oceans expedition (2009-2013) at station TARA_041 (latitudeN=14.5536, longitudeE=70.0128) on date/time=2010-03-30T10:56, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 58-62 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-1.6 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis.\"",
"environment-biome": "marine biome (ENVO:00000447)",
"environment-feature": "deep chlorophyll maximum layer (ENVO:xxxxxxxx)",
"environment-material": "\"saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)\"",
"sample-name": "TARA_B100000287",
"sample-alias": "TARA_B100000287",
"host-tax-id": null,
"species": null,
"last-update": "2024-04-15T17:44:30"
},
"relationships": {
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000410",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000410?format=api"
}
},
{
"type": "studies",
"id": "MGYS00001482",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001482?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002008",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002008?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002392",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002392?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006075",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006075?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS489074?format=api"
}
}
}