CHEBI:17562 - cytidine

ChEBI IDCHEBI:17562
ChEBI Namecytidine
Stars
DefinitionA pyrimidine nucleoside in which cytosine is attached to ribofuranose via a β-N1-glycosidic bond.
Secondary ChEBI IDsCHEBI:4053, CHEBI:14063, CHEBI:23515, CHEBI:41649, CHEBI:41686, CHEBI:41704, CHEBI:41709
Last Modified12 May 2025
DownloadsMolfile
FormulaC9H13N3O5
Net Charge0
Average Mass243.219
Monoisotopic Mass243.08552
SMILESNc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1
InChIInChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKeyUHDGCWIWMRVCDJ-XVFCMESISA-N
Wikipedia
Species of MetaboliteComponentSourceComments
Homo sapiens (ncbitaxon:9606) - DOI (10.1038/nbt.2488)
Saccharomyces cerevisiae (ncbitaxon:4932) - PubMed (24678285) Source: yeast.sf.net
Escherichia coli (ncbitaxon:562) - PubMed (21988831)
Mus musculus (ncbitaxon:10090) - PubMed (19425150) Source: BioModels - MODEL1507180067
Roles Classification
Biological Roles:
Saccharomyces cerevisiae metabolite  Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae ).
mouse metabolite  Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
human metabolite  Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
Escherichia coli metabolite  Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
ChEBI Ontology
Outgoing Relation(s)
cytidine (CHEBI:17562) has functional parent cytosine (CHEBI:16040)
cytidine (CHEBI:17562) has role Escherichia coli metabolite (CHEBI:76971)
cytidine (CHEBI:17562) has role Saccharomyces cerevisiae metabolite (CHEBI:75772)
cytidine (CHEBI:17562) has role human metabolite (CHEBI:77746)
cytidine (CHEBI:17562) has role mouse metabolite (CHEBI:75771)
cytidine (CHEBI:17562) is a cytidines (CHEBI:23524)
Incoming Relation(s)
N4-hydroxycytidine (CHEBI:180654) has functional parent cytidine (CHEBI:17562)
3'-deoxy-3',4'-didehydro-cytidine (CHEBI:156331) has functional parent cytidine (CHEBI:17562)
5-ethynylcytidine (CHEBI:228294) has functional parent cytidine (CHEBI:17562)
5-formylcytidine (CHEBI:234279) has functional parent cytidine (CHEBI:17562)
cytidine residue (CHEBI:64656) is substituent group from cytidine (CHEBI:17562)
IUPAC Name 
cytidine
Synonyms  Source
CytidineKEGG COMPOUND
4-amino-1-β-D-ribofuranosylpyrimidin-2(1H)-oneChEBI
4-amino-1β-D-ribofuranosyl-2(1H)-pyrimidinoneNIST Chemistry WebBook
1β-D-ribofuranosylcytosineNIST Chemistry WebBook
CydIUBMB
ZytidinChEBI
UniProt Name  Source
cytidineUniProt
Manual XrefsDatabases
C00475KEGG COMPOUND
CTNPDBeChem
HMDB0000089HMDB
CYTIDINEMetaCyc
CytidineWikipedia
DB02097DrugBank
D07769KEGG DRUG
Registry NumbersSources
Gmelin:84763Gmelin
Reaxys:89173Reaxys
CAS:65-46-3KEGG COMPOUND
CAS:65-46-3NIST Chemistry WebBook
CAS:65-46-3ChemIDplus
Citations