CHEBI:17562 - cytidine

ChEBI IDCHEBI:17562
ChEBI Namecytidine
Stars
DefinitionA pyrimidine nucleoside in which cytosine is attached to ribofuranose via a β-N1-glycosidic bond.
Secondary ChEBI IDsCHEBI:4053, CHEBI:14063, CHEBI:23515, CHEBI:41649, CHEBI:41686, CHEBI:41704, CHEBI:41709
Last Modified12 May 2025
DownloadsMolfile
FormulaC9H13N3O5
Net Charge0
Average Mass243.219
Monoisotopic Mass243.08552
SMILESNc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1
InChIInChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKeyUHDGCWIWMRVCDJ-XVFCMESISA-N
Wikipedia
Species of MetaboliteComponentSourceComments
Escherichia coli (ncbitaxon:562) - PubMed (21988831)
Homo sapiens (ncbitaxon:9606) - DOI (10.1038/nbt.2488)
Mus musculus (ncbitaxon:10090) - PubMed (19425150) Source: BioModels - MODEL1507180067
Saccharomyces cerevisiae (ncbitaxon:4932) - PubMed (24678285) Source: yeast.sf.net
Roles Classification
Biological Roles:
Escherichia coli metabolite  Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
human metabolite  Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
mouse metabolite  Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
Saccharomyces cerevisiae metabolite  Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae ).
Applications:
antineoplastic agent  A substance that inhibits or prevents the proliferation of neoplasms.
ophthalmology drug  Any compound used for the treatment of eye conditions or eye diseases.
antipsychotic agent  Antipsychotic drugs are agents that control agitated psychotic behaviour, alleviate acute psychotic states, reduce psychotic symptoms, and exert a quieting effect.
ChEBI Ontology
Outgoing Relation(s)
cytidine (CHEBI:17562) has functional parent cytosine (CHEBI:16040)
cytidine (CHEBI:17562) has role Escherichia coli metabolite (CHEBI:76971)
cytidine (CHEBI:17562) has role Saccharomyces cerevisiae metabolite (CHEBI:75772)
cytidine (CHEBI:17562) has role antineoplastic agent (CHEBI:35610)
cytidine (CHEBI:17562) has role antipsychotic agent (CHEBI:35476)
cytidine (CHEBI:17562) has role human metabolite (CHEBI:77746)
cytidine (CHEBI:17562) has role mouse metabolite (CHEBI:75771)
cytidine (CHEBI:17562) has role ophthalmology drug (CHEBI:66981)
cytidine (CHEBI:17562) is a cytidines (CHEBI:23524)
Incoming Relation(s)
N4-hydroxycytidine (CHEBI:180654) has functional parent cytidine (CHEBI:17562)
3'-deoxy-3',4'-didehydro-cytidine (CHEBI:156331) has functional parent cytidine (CHEBI:17562)
5-ethynylcytidine (CHEBI:228294) has functional parent cytidine (CHEBI:17562)
5-formylcytidine (CHEBI:234279) has functional parent cytidine (CHEBI:17562)
cytidine residue (CHEBI:64656) is substituent group from cytidine (CHEBI:17562)
IUPAC Name 
cytidine
Synonyms  Source
1-beta-D-RibofuranosylcytosineHMDB
1β-D-ribofuranosylcytosineNIST Chemistry WebBook
4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONEPDBeChem
4-amino-1β-D-ribofuranosyl-2(1H)-pyrimidinoneNIST Chemistry WebBook
4-amino-1-β-D-ribofuranosylpyrimidin-2(1H)-oneChEBI
CydIUBMB
UniProt Name  Source
cytidineUniProt
Manual XrefsDatabases
C00475KEGG COMPOUND
CTNPDBeChem
CytidineWikipedia
CYTIDINEMetaCyc
D07769KEGG DRUG
DB02097DrugBank
HMDB0000089HMDB
Registry NumbersSources
Gmelin:84763Gmelin
Reaxys:89173Reaxys
CAS:65-46-3ChemIDplus
CAS:65-46-3NIST Chemistry WebBook
CAS:65-46-3KEGG COMPOUND
Citations