This is a collection of datasets that have been processed using different AI models from the BioImage Model Zoo. You will be able to see the outputs of models applied to a particular dataset and compare their predictions.
Go-Nuclear. A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context
Release date: 2024-06-29
Imaging method: confocal microscopy
Organism: Arabidopsis thaliana (thale cress)
Tags: nuclei, 3D, segmentation, ground truth, Arabidopsis thaliana, ovule, fluorescence microscopy
3D light-sheet microscopy data for SELMA3D 2024 challenge - Training subset with annotations
Release date: 2024-06-05
Imaging method: fluorescence microscopy, flu
Organism: Mus musculus (mouse), Homo sapiens (human)
Tags: nuclei, 3D, segmentation, ground truth, human, brain, fluorescence microscopy
Synthetic images and segmentation masks simulating HL-60 cell nucleus in 3D
Release date: 2024-11-26
Imaging method: simulated fluorescence microscopy
Organism: simulated data
Tags: nuclei, 3D, segmentation, ground truth, synthetic data
3D Ground Truth Annotations of Nuclei in 3D Microscopy Volumes
Release date: 2024-12-20
Imaging method: Fluorescence microscopy, Confocal microscopy, simulated fluorescence microscopy, Two-photon laser scanning microscopy
Organism: Homo sapiens (human), Rattus norvegicus (brown rat), simulated data, Mus musculus (mouse)
Tags: nuclei, 3D, segmentation, ground truth, mouse, human, rat, intestine, kidney, fluorescence microscopy, synthetic data
PhotoFiTT: A Quantitative Framework for Assessing Phototoxicity in Live-Cell Microscopy Experiments
Release date: 2024-07-12
Imaging method: bright-field microscopy, fluorescence microscopy
Organism: Cricetulus griseus (Chinese Hamster)
Tags: cells, 2D, chinese hamster, ovary, transmission light microscopy
Nanoscale analysis of human G1 and metaphase chromatin in situ
Release date: 2024-11-06
Imaging method: fluorescence microscopy
Organism: Homo sapiens (human)
Tags: cells, 3D, human, transmission light microscopy
Ct inoculation on At roots
Release date: 2023-07-31
Imaging method: fluorescence microscopy
Organism: Arabidopsis thaliana (thale cress)
Tags: cell boundary, 3D, Arabidopsis thaliana, root, fluorescence microscopy
Characterization of the small Arabidopsis thaliana GTPase and ADP-ribosylation factor-like 2 protein TITAN 5
Release date: 2024-07-04
Imaging method: Confocal laser scanning microscopy , Light microscopy
Organism: Arabidopsis thaliana (thale cress), Nicotiana benthamiana
Tags: cell boundary, 3D, Nicotiana benthamiana, leaves, pavement cells, fluorescence microscopy
Slik sculpts the plasma membrane into cytonemes to control cell-cell communication.
Release date: 2024-11-22
Imaging method: confocal microscopy, scanning electron microscopy (SEM), spinning disk confocal microscopy
Organism: Drosophila melanogaster (fruit fly)
Tags: cell boundary, 3D, Drosophila melanogaster, wing disc, fluorescence microscopy
Mechanics of human embryo compaction
Release date: 2023-12-22
Imaging method: light microscopy, confocal microscopy
Organism: Homo sapiens (human)
Tags: cell boundary, 3D, human, embryo, fluorescence microscopy
The Septin Cytoskeleton is Required for Plasma Membrane Repair
Release date: 2024-06-05
Imaging method: fluorescence microscopy
Organism: Homo sapiens (human)
Tags: cells, 3D, human, HeLa cells, fluorescence microscopy
A conjugative plasmid exploits flagella rotation as a cue to facilitate its transfer
Release date: 2024-09-23
Imaging method: fluorescence microscopy
Organism: Bacillus subtilis
Tags: bacteria, 2D, Bacillus subtilis, fluorescence microscopy
Expression of gap and gap-like genes during segmentation in Tribolium castaneum
Release date: 2024-05-24
Imaging method: confocal microscopy
Organism: Tribolium castaneum
Tags: 3D, Tribolium castaneum, embryo, fluorescence microscopy