S-BIAD605alpha

Whole slide images and patches of clear cell renal cell carcinoma counterstained with multiple immunofluorescence for Hoechst, CD3, and CD8.

Released 2022-12-25
Georg Wölflein, In Hwa Um, David Harrison, Ognjen Arandjelović

Content

  • 20 images
  • 2 other files
We provide a dataset of 10 whole slide images of clear cell renal cell carcinoma tissue sections that were counterstained with Hoechst 33342, Cy3 and Cy5. The fluorescent images were captured using Zeiss Axio Scan Z1. We used three different fluorescent channels (Hoechst 33342, Cy3 and Cy5) simultaneously to capture individual channel images under 20x object magnification with respective exposure times of 10 ms, 20 ms and 30 ms. We also provide clinical data including age at surgery, gender, disease free months, nuclear grade, and Leibovich score. Alongside the WSIs, we provide pre-processed and normalised patches (each 256x256 pixels) from the WSIs in a format that can be readily ingested by deep learning models for their training. For each patch, we provide normalised Hoechst, CD3, and CD8 images, as well as cell masks identified using the StarDist algorithm. Each cell is annotated as CD3, CD8 (a subset of CD3), or neither.

Study information

Organism
Homo sapiens (human)
Imaging type
fluorescence microscopy
License
CC0

Viewable images

Image ID Preview Filename Dimensions
(T, C, Z, Y, X)		 Download Size Actions
IM1 ccrcc/slides/ICAIRD1089_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi (1, 5, 1, 91854, 96957) Unavailable

All images

Image ID Filename Download Size Actions
IM1 ccrcc/slides/ICAIRD1089_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM2 ccrcc/slides/ICAIRD1007_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM3 ccrcc/slides/ICAIRD1025_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM4 ccrcc/slides/ICAIRD1087_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM5 ccrcc/slides/ICAIRD1014_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM6 ccrcc/slides/ICAIRD1029_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM7 ccrcc/slides/ICAIRD977_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM8 ccrcc/slides/ICAIRD1073_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM9 ccrcc/slides/ICAIRD1067_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
IM10 ccrcc/slides/ICAIRD1027_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
fcc3f303-9ffb-4deb-ac7f-9ba09d1eb0b5 ccrcc/slides/ICAIRD1067_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
8d584813-ec88-4d36-8405-23bf7912dc40 ccrcc/slides/ICAIRD1025_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
b998b86f-b68a-4b3e-a4f4-106c090555ce ccrcc/slides/ICAIRD977_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
81f9863c-f9e4-4303-9b93-a964b549c22a ccrcc/slides/ICAIRD1029_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
f11a0f36-2f66-42ab-b79a-95cdb943e772 ccrcc/slides/ICAIRD1089_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
cfb7be56-0d91-420a-bbe5-0161c96a2b5b ccrcc/slides/ICAIRD1087_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
e4724192-1ca8-40fc-a40e-423e1332924b ccrcc/slides/ICAIRD1027_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
72b117b4-8391-49dd-b15d-75815d727162 ccrcc/slides/ICAIRD1007_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
8599cfa0-c723-496e-8013-44e340a994ef ccrcc/slides/ICAIRD1014_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download
bb59fa85-22b5-424b-9975-b7310964b864 ccrcc/slides/ICAIRD1073_MCM2FITC_CD3CY3_CD8CY5_MCK750.czi Unavailable Download