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PDBsum entry 5a8f
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Viral protein
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PDB id
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5a8f
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Contents |
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219 a.a.
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189 a.a.
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258 a.a.
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PDB id:
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| Name: |
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Viral protein
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Title:
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Structure and genome release mechanism of human cardiovirus saffold virus-3
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Structure:
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Human saffold virus-3 vp1. Chain: a. Genome polyphuman saffold virus-3 vp3 protein. Chain: b. Human saffold virus-3 vp2. Chain: c
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Source:
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Saffold virus. Organism_taxid: 434309. Organism_taxid: 434309
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Authors:
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E.Mullapudi,J.Novacek,L.Palkova,P.Kulich,M.Lindberg, F.J.M.Vankuppeveld,P.Plevka
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Key ref:
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E.Mullapudi
et al.
(2016).
Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
J Virol,
90,
7628-7639.
PubMed id:
DOI:
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Date:
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15-Jul-15
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Release date:
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08-Jun-16
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PROCHECK
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Headers
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References
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C0MHL9
(POLG_SAFV) -
Genome polyprotein from Saffold virus
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Seq:
Struc:
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2295 a.a.
219 a.a.*
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Enzyme class 1:
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Chains A, C:
E.C.2.7.7.48
- RNA-directed Rna polymerase.
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Reaction:
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RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate
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RNA(n)
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+
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ribonucleoside 5'-triphosphate
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=
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RNA(n+1)
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+
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diphosphate
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Enzyme class 2:
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Chains A, C:
E.C.3.4.22.28
- picornain 3C.
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Reaction:
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Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
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Enzyme class 3:
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Chains A, B, C:
E.C.3.6.4.13
- Rna helicase.
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Reaction:
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ATP + H2O = ADP + phosphate + H+
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ATP
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+
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H2O
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=
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ADP
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+
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phosphate
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+
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H(+)
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Note, where more than one E.C. class is given (as above), each may
correspond to a different protein domain or, in the case of polyprotein
precursors, to a different mature protein.
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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DOI no:
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J Virol
90:7628-7639
(2016)
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PubMed id:
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Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
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E.Mullapudi,
J.Nováček,
L.Pálková,
P.Kulich,
A.M.Lindberg,
F.J.van Kuppeveld,
P.Plevka.
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ABSTRACT
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Links
