PDBsum entry 5a8f Go to PDB code:  Tunnel analysis for: 5a8f calculated with MOLE 2.0 PDB id 5a8f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 2.34 21.5 1.72 0.66 5.2 68 1 0 0 8 3 1 0   2 1.19 1.39 22.3 1.45 0.59 5.9 65 1 0 0 7 3 1 0   3 1.14 1.29 15.6 -0.87 -0.57 10.5 75 1 0 1 3 0 0 0   4 1.19 1.34 16.2 -0.67 -0.57 9.1 75 1 0 1 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.