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Ligand clusters for UniProt code Q75WH8

Ligand clusters for Q75WH8: L-rhamnose isomerase from Pseudomonas stutzeri

4 ligand clusters
Cluster 1.
8 ligand types
16 ligands
Cluster 2.
9 ligand types
52 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Representative protein: 2hcvA  
JSmol
 

Structures

PDB   Schematic diagram
2hcvA    
3itlA    
3m0vA    
4gjiA    
3m0xA    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: RNS × 6
L-Rhamnose
PDB codes: 2i56(A), 3itt(A), 3m0h(A), 3m0v(A), 3m0y(A), 4gji(A).


 
2. Ligand: PSJ × 3
D-Psicose
PDB codes: 3itv(A), 3m0l(A), 3m0x(A).


 
3. Ligand: AOS × 2
D-Allose
PDB codes: 2i57(A), 3m0m(A).


 
4. Ligand: AFD × 1
Alpha-D-Allopyranose
PDB code: 4gjj(A).


 
5. Ligand: LRH × 1
6-Deoxy-Beta-L-Fructofuranose
PDB code: 3itl(A).


 
6. Ligand: PSV × 1
Alpha-D-Psicofuranose
PDB code: 3ito(A).


 
7. Ligand: RAM × 1
Alpha-L-Rhamnopyranose
PDB code: 4gji(A).


 
8. Ligand: RM4 × 1
Beta-L-Rhamnopyranose
PDB code: 4gji(A).

 

 Cluster 2 contains 9 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 26
PDB codes: 3itl(A), 3ito(A), 3itt(A), 3itv(A), 3itx(A), 3m0h(A), 3m0l(A), 3m0m(A), 3m0v(A), 3m0x(A), 3m0y(A), 4gji(A), 4gjj(A),

_Zn
 
2. Metal: _ZN × 8
PDB codes: 2hcv(A), 2i56(A), 2i57(A), 3iui(A),


 
3. Ligand: RNS × 6
L-Rhamnose
PDB codes: 2i56(A), 3itt(A), 3m0h(A), 3m0v(A), 3m0y(A), 4gji(A).


 
4. Ligand: AOS × 3
D-Allose
PDB codes: 2i57(A), 3m0m(A), 4gjj(A).


 
5. Ligand: PSJ × 3
D-Psicose
PDB codes: 3itv(A), 3m0l(A), 3m0x(A).

_Co
 
6. Metal: _CO × 2
PDB codes: 3iuh(A),

_Cu
 
7. Metal: _CU × 2
PDB codes: 3iud(A),


 
8. Ligand: LRH × 1
6-Deoxy-Beta-L-Fructofuranose
PDB code: 3itl(A).


 
9. Ligand: PSV × 1
Alpha-D-Psicofuranose
PDB code: 3ito(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: RAM × 1
Alpha-L-Rhamnopyranose
PDB code: 4gji(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Mn
 
1. Metal: _MN × 2
PDB codes: 4gji(A), 4gjj(A).

 

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