Ligand clusters for UniProt code Q5KWC1

Ligand clusters for Q5KWC1: DNA polymerase I from Geobacillus kaustophilus (strain HTA426)

		Top 6 (of 21) ligand clusters Cluster 1. 10 ligand types 35 ligands Cluster 2. 6 ligand types 11 ligands Cluster 3. 2 ligand types 12 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1njwA

Structures

PDB		Schematic diagram
1njwA
4e0dA
4ez6D
3pv8A
3px4D
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 5 PDB codes: 2hhw(A), 3px0(A), 3px6(A), 4dqr(A), 4f3o(A).
_Mg		2. Metal: _MG × 4 PDB codes: 3pv8(A), 3px4(D), 4dqi(A), 4dqp(A).
		3. Ligand: DCT × 1 2',3'-Dideoxycytidine 5'-Triphosphate PDB code: 2hvi(A).
		4. Ligand: SO4 × 8 Sulfate ion PDB codes: 1njw(A), 2hhu(A), 2hhv(A), 2hhx(A), 4dqs(A), 4e0d(A), 4f8r(A).
		5. Ligand: CTP × 5 Cytidine-5'-Triphosphate PDB codes: 4dqr(A), 4dse(D), 4dsf(D), 4f2r(A), 4f2s(A).
		6. Ligand: DCT × 3 2',3'-Dideoxycytidine 5'-Triphosphate PDB codes: 3px4(D), 3px6(A), 4dqp(A).
		7. Ligand: D3T × 3 2',3'-Dideoxy-Thymidine-5'-Triphosphate PDB codes: 2hhw(A), 3hp6(A), 3pv8(A).
		8. Ligand: DCP × 2 2'-Deoxycytidine-5'-Triphosphate PDB codes: 3px0(A), 4dqi(A).
		9. Ligand: DG3 × 2 2'-3'-Dideoxyguanosine-5'-Triphosphate PDB codes: 4ez6(A),
		10. Ligand: MES × 2 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 4dqq(A), 4e0d(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 2hhu(A).
		2. Ligand: DCT × 1 2',3'-Dideoxycytidine 5'-Triphosphate PDB code: 2hvi(A).
		3. Ligand: DCP × 3 2'-Deoxycytidine-5'-Triphosphate PDB codes: 3px0(A), 4dqi(A), 4e0d(A).
		4. Ligand: DCT × 3 2',3'-Dideoxycytidine 5'-Triphosphate PDB codes: 3px4(A), 3px6(A), 4dqp(A).
		5. Ligand: CTP × 2 Cytidine-5'-Triphosphate PDB codes: 4dqq(A), 4dqs(A).
		6. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 4e0d(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GLC-FRU × 10 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 1njw(A), 1ua0(A), 2hhu(A), 2hhv(A), 2hhw(A), 2hhx(A), 2hvi(A), 3hp6(A), 4f2r(A), 4f2s(A).
		2. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 4dqq(A), 4e0d(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-FRU × 2 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 1njw(A), 2hhx(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-FRU × 2 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 2hhu(A), 2hhv(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: _AF × 1 2-Aminofluorene PDB code: 1ua0(A).