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Ligand clusters for UniProt code Q56839

Ligand clusters for Q56839: 2-oxopropyl-CoM reductase, carboxylating from Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

5 ligand clusters
Cluster 1.
3 ligand types
7 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
4 ligand types
6 ligands
Cluster 4.
4 ligand types
6 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 1mo9A  
JSmol
 

Structures

PDB   Schematic diagram
1mo9A    
2c3dA    
3q6jA    
2c3cA    
1mokA    

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAP × 1
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB code: 2c3c(A).


 
2. Ligand: FAD × 5
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes: 1mo9(A), 1mok(A), 2c3c(A), 2c3d(A), 3q6j(A).


 
3. Ligand: NAP × 1
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB code: 3q6j(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: FAD × 5
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes: 1mo9(A), 1mok(A), 2c3c(A), 2c3d(A), 3q6j(A).

 

 Cluster 3 contains 4 ligand types

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Ligand Description


 
1. Ligand: KPC × 1
(2-[2-Ketopropylthio]ethanesulfonate
PDB code: 1mo9(A).


 
2. Ligand: COM × 2
coenzyme m
1-Thioethanesulfonic acid
PDB codes: 2c3c(A), 2c3d(A).


 
3. Ligand: ACN × 2
Acetone
PDB codes: 2c3c(A), 3q6j(A).


 
4. Ligand: BCT × 1
Bicarbonate ion
PDB code: 3q6j(A).

 

 Cluster 4 contains 4 ligand types

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Ligand Description


 
1. Ligand: KPC × 1
(2-[2-Ketopropylthio]ethanesulfonate
PDB code: 1mo9(A).


 
2. Ligand: COM × 3
coenzyme m
1-Thioethanesulfonic acid
PDB codes: 2c3c(A), 2c3d(A),


 
3. Ligand: ACN × 1
Acetone
PDB code: 2c3c(A).


 
4. Ligand: KPC × 1
(2-[2-Ketopropylthio]ethanesulfonate
PDB code: 3q6j(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Mg
 
1. Metal: _MG × 1
PDB code: 3q6j(A).

 

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