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EBI
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PDBsum
Ligand clusters for UniProt code Q45458
Ligand clusters for Q45458: DNA polymerase I from Geobacillus stearothermophilus
Top 6 (of 12) ligand clusters
Cluster 1.
3 ligand types
6 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
4 ligands
Representative protein: 2hhqA
Structures
PDB
Schematic diagram
2hhq
A
2hht
A
2hhs
A
2hw3
A
2hvh
A
Cluster 1 contains 3 ligand types
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Ligand
Description
_Mn
1. Metal:
_MN × 1
PDB code:
2hvh
(A).
2. Ligand:
DCT × 1
2',3'-Dideoxycytidine 5'-Triphosphate
PDB code:
2hvh
(A).
3. Ligand:
SO4 × 4
Sulfate ion
PDB codes:
2hhq
(A),
2hhs
(A),
2hht
(A),
2hw3
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 5
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB codes:
2hhq
(A),
2hhs
(A),
2hht
(A),
2hvh
(A),
2hw3
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 2
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB codes:
2hhq
(A),
2hw3
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 3
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB codes:
2hhq
(A),
2hhs
(A),
2hht
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 1
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
2hvh
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 4
Sulfate ion
PDB codes:
2hhq
(A),
2hhs
(A),
2hht
(A),
2hw3
(A).